Wall clock time and date at job start Tue Mar 31 2020 18:09:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09004 * 109.47631 * 2 1 4 4 O 1.42906 * 109.46874 * 240.00529 * 2 1 3 5 5 C 1.42895 * 114.00237 * 90.00043 * 4 2 1 6 6 C 1.53002 * 109.47297 * 180.02562 * 5 4 2 7 7 H 1.09000 * 109.48006 * 54.97704 * 6 5 4 8 8 C 1.53089 * 109.47979 * 174.99972 * 6 5 4 9 9 C 1.53181 * 109.16213 * 177.58995 * 8 6 5 10 10 C 1.53177 * 109.03588 * 303.02047 * 9 8 6 11 11 C 1.53088 * 109.16341 * 56.97939 * 10 9 8 12 12 O 1.42903 * 109.47627 * 294.93872 * 6 5 4 13 13 C 1.50695 * 109.47418 * 120.00523 * 2 1 3 14 14 O 1.21270 * 120.00130 * 114.99320 * 13 2 1 15 15 N 1.34773 * 119.99690 * 294.99876 * 13 2 1 16 16 C 1.39274 * 120.00118 * 185.13212 * 15 13 2 17 17 C 1.39673 * 119.57638 * 174.62636 * 16 15 13 18 18 C 1.38655 * 119.49151 * 180.02562 * 17 16 15 19 19 C 1.38347 * 118.67518 * 0.02562 * 18 17 16 20 20 C 1.40579 * 119.12538 * 359.97438 * 19 18 17 21 21 C 1.41345 * 119.78713 * 180.02562 * 20 19 18 22 22 H 1.08001 * 119.99781 * 359.97438 * 21 20 19 23 23 C 1.40022 * 120.00044 * 179.97438 * 21 20 19 24 24 N 1.30740 * 120.00193 * 359.97438 * 23 21 20 25 25 Si 1.86795 * 119.99864 * 180.02562 * 23 21 20 26 26 H 1.48493 * 109.47447 * 90.00036 * 25 23 21 27 27 H 1.48507 * 109.47031 * 209.99948 * 25 23 21 28 28 H 1.48502 * 109.47175 * 329.99634 * 25 23 21 29 29 N 1.31904 * 119.57273 * 354.61000 * 16 15 13 30 30 H 1.09000 * 109.46908 * 300.00042 * 1 2 3 31 31 H 1.09004 * 109.46962 * 59.99526 * 1 2 3 32 32 H 1.08996 * 109.47300 * 179.97438 * 1 2 3 33 33 H 1.09005 * 109.47406 * 300.00244 * 5 4 2 34 34 H 1.09008 * 109.47135 * 59.99836 * 5 4 2 35 35 H 1.08998 * 109.52592 * 297.49872 * 8 6 5 36 36 H 1.08999 * 109.52415 * 57.62506 * 8 6 5 37 37 H 1.08994 * 109.54332 * 62.88688 * 9 8 6 38 38 H 1.09003 * 109.54220 * 183.06382 * 9 8 6 39 39 H 1.08995 * 109.52290 * 176.88873 * 10 9 8 40 40 H 1.09010 * 109.52229 * 297.01084 * 10 9 8 41 41 H 1.08990 * 109.48188 * 62.37448 * 11 10 9 42 42 H 1.09005 * 109.48103 * 182.41308 * 11 10 9 43 43 H 0.96998 * 120.00459 * 5.13439 * 15 13 2 44 44 H 1.07995 * 120.24944 * 359.97438 * 17 16 15 45 45 H 1.08002 * 120.66011 * 179.97438 * 18 17 16 46 46 H 1.07997 * 120.44109 * 180.02562 * 19 18 17 47 47 H 0.97003 * 120.00079 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 8 2.0063 -0.6736 -1.1669 5 6 2.2000 0.1830 -2.2941 6 6 2.7078 -0.6406 -3.4793 7 1 2.0193 -1.4635 -3.6717 8 6 2.7966 0.2515 -4.7203 9 6 3.3623 -0.5645 -5.8867 10 6 4.7249 -1.1356 -5.4825 11 6 4.5616 -1.9741 -4.2121 12 8 4.0028 -1.1633 -3.1764 13 6 2.0324 -0.7105 1.2303 14 8 2.6529 -1.7467 1.1213 15 7 1.7920 -0.1943 2.4519 16 6 2.3461 -0.7914 3.5815 17 6 2.1853 -0.1864 4.8301 18 6 2.7381 -0.7820 5.9536 19 6 3.4375 -1.9659 5.8010 20 6 3.5644 -2.5251 4.5175 21 6 4.2755 -3.7345 4.3457 22 1 4.7196 -4.2257 5.1989 23 6 4.4042 -4.2958 3.0693 24 7 3.8662 -3.7015 2.0366 25 14 5.3434 -5.8944 2.8424 26 1 4.4099 -7.0409 2.9809 27 1 5.9602 -5.9187 1.4917 28 1 6.4068 -5.9945 3.8741 29 7 3.0157 -1.9212 3.4586 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3634 -1.0276 -0.0005 33 1 1.2537 0.6549 -2.5589 34 1 2.9320 0.9514 -2.0450 35 1 1.8024 0.6158 -4.9789 36 1 3.4524 1.0974 -4.5146 37 1 2.6808 -1.3812 -6.1247 38 1 3.4792 0.0787 -6.7589 39 1 5.1098 -1.7632 -6.2862 40 1 5.4209 -0.3182 -5.2935 41 1 3.8976 -2.8144 -4.4141 42 1 5.5354 -2.3479 -3.8955 43 1 1.2330 0.5930 2.5443 44 1 1.6353 0.7387 4.9196 45 1 2.6257 -0.3303 6.9281 46 1 3.8795 -2.4545 6.6567 47 1 3.9556 -4.0901 1.1523 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000882478222.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:09:17 Heat of formation + Delta-G solvation = -98.459962 kcal Electronic energy + Delta-G solvation = -29306.457722 eV Core-core repulsion = 25261.160355 eV Total energy + Delta-G solvation = -4045.297367 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.13331 -40.45814 -39.56368 -38.20578 -35.89929 -34.87084 -34.56939 -33.50691 -32.27443 -32.01794 -30.56809 -27.99428 -27.49484 -25.57822 -24.97150 -23.55722 -23.14570 -22.88651 -21.26145 -20.82422 -19.62146 -18.21557 -18.04188 -17.64639 -17.29196 -16.89937 -16.42677 -16.25841 -16.12912 -15.86686 -15.55443 -15.39185 -15.20577 -15.12190 -14.66780 -14.48444 -14.01930 -13.74281 -13.64182 -13.55980 -13.31741 -13.19724 -12.96949 -12.87822 -12.72742 -12.56089 -12.32144 -12.28498 -12.13994 -11.99354 -11.77467 -11.59720 -11.49537 -11.25078 -10.87053 -10.82700 -10.39850 -10.34028 -9.89774 -9.04467 -8.81439 -8.03965 -6.42105 0.92725 1.26180 1.36832 1.49995 1.52161 1.99522 2.14219 2.25352 2.81161 2.91446 3.00045 3.72451 3.84706 3.90142 3.93702 3.97569 4.03088 4.05670 4.14623 4.18972 4.30284 4.38445 4.39089 4.47356 4.63507 4.67702 4.72759 4.74867 4.82767 4.85768 4.90507 4.92422 4.96858 5.04631 5.07764 5.08709 5.14727 5.22640 5.27882 5.36032 5.68873 5.86312 5.93111 6.11102 6.20504 6.35550 6.40275 6.75494 6.87538 7.08057 7.73348 8.36462 8.56974 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.011183 B = 0.003583 C = 0.002819 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2503.208849 B = 7813.092282 C = 9929.943240 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.082 3.918 3 H 0.109 0.891 4 O -0.385 6.385 5 C 0.062 3.938 6 C 0.085 3.915 7 H 0.055 0.945 8 C -0.140 4.140 9 C -0.120 4.120 10 C -0.151 4.151 11 C 0.050 3.950 12 O -0.405 6.405 13 C 0.454 3.546 14 O -0.447 6.447 15 N -0.651 5.651 16 C 0.349 3.651 17 C -0.343 4.343 18 C -0.035 4.035 19 C -0.330 4.330 20 C 0.235 3.765 21 C -0.467 4.467 22 H 0.087 0.913 23 C 0.009 3.991 24 N -0.690 5.690 25 Si 0.973 3.027 26 H -0.264 1.264 27 H -0.277 1.277 28 H -0.252 1.252 29 N -0.513 5.513 30 H 0.092 0.908 31 H 0.097 0.903 32 H 0.044 0.956 33 H 0.101 0.899 34 H 0.055 0.945 35 H 0.100 0.900 36 H 0.074 0.926 37 H 0.067 0.933 38 H 0.090 0.910 39 H 0.090 0.910 40 H 0.067 0.933 41 H 0.047 0.953 42 H 0.086 0.914 43 H 0.421 0.579 44 H 0.136 0.864 45 H 0.139 0.861 46 H 0.104 0.896 47 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.198 11.541 -16.410 20.998 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.020 3.980 3 H 0.126 0.874 4 O -0.304 6.304 5 C -0.014 4.014 6 C 0.028 3.972 7 H 0.073 0.927 8 C -0.177 4.177 9 C -0.158 4.158 10 C -0.189 4.189 11 C -0.026 4.026 12 O -0.325 6.325 13 C 0.237 3.763 14 O -0.312 6.312 15 N -0.302 5.302 16 C 0.110 3.890 17 C -0.368 4.368 18 C -0.059 4.059 19 C -0.353 4.353 20 C 0.110 3.890 21 C -0.497 4.497 22 H 0.105 0.895 23 C -0.216 4.216 24 N -0.309 5.309 25 Si 0.793 3.207 26 H -0.188 1.188 27 H -0.202 1.202 28 H -0.176 1.176 29 N -0.232 5.232 30 H 0.110 0.890 31 H 0.116 0.884 32 H 0.063 0.937 33 H 0.119 0.881 34 H 0.074 0.926 35 H 0.118 0.882 36 H 0.092 0.908 37 H 0.086 0.914 38 H 0.108 0.892 39 H 0.108 0.892 40 H 0.086 0.914 41 H 0.066 0.934 42 H 0.104 0.896 43 H 0.259 0.741 44 H 0.153 0.847 45 H 0.157 0.843 46 H 0.123 0.877 47 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -5.531 10.212 -17.492 20.997 hybrid contribution 0.122 -0.075 0.836 0.848 sum -5.409 10.136 -16.656 20.234 Atomic orbital electron populations 1.22194 0.91404 1.02900 1.05120 1.21958 0.96297 0.96041 0.83657 0.87351 1.88105 1.86982 1.35432 1.19903 1.22869 1.00836 0.92489 0.85171 1.22271 0.84584 0.96197 0.94184 0.92674 1.22108 1.03694 0.98409 0.93513 1.21605 0.95977 1.00145 0.98035 1.22170 0.98728 1.00580 0.97390 1.22716 0.98643 0.92892 0.88364 1.88048 1.33262 1.68342 1.42834 1.21634 0.82267 0.87214 0.85178 1.91164 1.34007 1.20819 1.85207 1.43310 1.51292 1.31701 1.03938 1.19172 0.92402 0.91239 0.86207 1.20985 1.17889 1.06318 0.91650 1.21054 0.93288 0.93388 0.98136 1.21802 1.13766 1.02231 0.97478 1.18899 0.89884 0.92884 0.87350 1.19906 1.29715 1.05269 0.94856 0.89517 1.27066 0.96858 1.02041 0.95627 1.70526 1.27509 1.33863 0.99049 0.85361 0.79071 0.77861 0.78365 1.18848 1.20209 1.17555 1.68667 1.14489 1.08408 1.31649 0.88973 0.88440 0.93667 0.88120 0.92633 0.88176 0.90753 0.91406 0.89177 0.89185 0.91379 0.93428 0.89563 0.74080 0.84668 0.84332 0.87735 0.92175 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.46 9.47 71.98 0.68 -2.78 16 2 C 0.08 2.47 3.13 29.85 0.09 2.56 16 3 H 0.11 2.50 7.79 -2.39 -0.02 2.48 16 4 O -0.39 -13.55 9.49 -125.61 -1.19 -14.74 16 5 C 0.06 1.51 5.41 71.98 0.39 1.90 16 6 C 0.09 2.10 2.93 30.62 0.09 2.19 16 7 H 0.06 1.42 8.14 -2.39 -0.02 1.40 16 8 C -0.14 -2.19 5.42 30.68 0.17 -2.02 16 9 C -0.12 -1.69 6.03 30.71 0.19 -1.50 16 10 C -0.15 -2.59 6.14 30.68 0.19 -2.40 16 11 C 0.05 1.25 6.84 72.01 0.49 1.74 16 12 O -0.40 -13.16 10.37 -144.41 -1.50 -14.66 16 13 C 0.45 19.80 7.14 87.66 0.63 20.43 16 14 O -0.45 -25.69 12.28 15.99 0.20 -25.49 16 15 N -0.65 -25.97 5.35 -308.38 -1.65 -27.61 16 16 C 0.35 17.52 7.43 133.25 0.99 18.51 16 17 C -0.34 -14.93 9.96 22.72 0.23 -14.70 16 18 C -0.03 -1.54 10.15 22.40 0.23 -1.31 16 19 C -0.33 -17.22 9.83 22.87 0.22 -17.00 16 20 C 0.24 14.20 6.55 40.20 0.26 14.46 16 21 C -0.47 -27.83 9.14 23.47 0.21 -27.62 16 22 H 0.09 4.82 7.85 -2.91 -0.02 4.80 16 23 C 0.01 0.54 5.50 85.29 0.47 1.01 16 24 N -0.69 -42.86 9.00 21.84 0.20 -42.67 16 25 Si 0.97 43.27 29.56 68.60 2.03 45.30 16 26 H -0.26 -11.26 7.11 99.48 0.71 -10.55 16 27 H -0.28 -12.11 7.11 99.48 0.71 -11.41 16 28 H -0.25 -10.58 7.11 99.48 0.71 -9.87 16 29 N -0.51 -30.97 5.74 -186.35 -1.07 -32.04 16 30 H 0.09 1.57 7.77 -2.39 -0.02 1.55 16 31 H 0.10 1.45 7.87 -2.39 -0.02 1.43 16 32 H 0.04 1.23 8.14 -2.39 -0.02 1.21 16 33 H 0.10 1.57 7.87 -2.38 -0.02 1.55 16 34 H 0.06 1.33 8.09 -2.38 -0.02 1.31 16 35 H 0.10 1.05 8.14 -2.39 -0.02 1.03 16 36 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 37 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 38 H 0.09 0.90 8.14 -2.39 -0.02 0.88 16 39 H 0.09 1.20 8.14 -2.39 -0.02 1.18 16 40 H 0.07 1.21 8.14 -2.38 -0.02 1.19 16 41 H 0.05 1.15 8.14 -2.39 -0.02 1.13 16 42 H 0.09 2.16 8.14 -2.38 -0.02 2.14 16 43 H 0.42 11.82 8.31 -92.71 -0.77 11.05 16 44 H 0.14 4.61 8.06 -2.91 -0.02 4.58 16 45 H 0.14 4.89 8.06 -2.91 -0.02 4.87 16 46 H 0.10 5.08 8.06 -2.91 -0.02 5.06 16 47 H 0.27 16.02 8.29 -92.71 -0.77 15.25 16 Total: -1.00 -86.86 383.57 2.74 -84.12 By element: Atomic # 1 Polarization: 34.12 SS G_CDS: 0.20 Total: 34.32 kcal Atomic # 6 Polarization: -12.05 SS G_CDS: 5.53 Total: -6.52 kcal Atomic # 7 Polarization: -99.80 SS G_CDS: -2.52 Total: -102.32 kcal Atomic # 8 Polarization: -52.40 SS G_CDS: -2.49 Total: -54.90 kcal Atomic # 14 Polarization: 43.27 SS G_CDS: 2.03 Total: 45.30 kcal Total: -86.86 2.74 -84.12 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000882478222.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.336 kcal (2) G-P(sol) polarization free energy of solvation -86.863 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.199 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.739 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.124 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.460 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds