Wall clock time and date at job start Tue Mar 31 2020 18:09:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09003 * 109.47299 * 2 1 4 4 O 1.42904 * 109.47114 * 120.00791 * 2 1 3 5 5 C 1.42895 * 113.99623 * 269.99362 * 4 2 1 6 6 C 1.53002 * 109.46900 * 179.97438 * 5 4 2 7 7 H 1.08996 * 109.48180 * 304.97511 * 6 5 4 8 8 C 1.53093 * 109.47907 * 184.94677 * 6 5 4 9 9 C 1.53181 * 109.16286 * 182.40828 * 8 6 5 10 10 C 1.53183 * 109.03508 * 56.97805 * 9 8 6 11 11 C 1.53096 * 109.16176 * 303.02311 * 10 9 8 12 12 O 1.42895 * 109.48098 * 65.00284 * 6 5 4 13 13 C 1.50701 * 109.46742 * 240.00307 * 2 1 3 14 14 O 1.21272 * 120.00069 * 245.00274 * 13 2 1 15 15 N 1.34782 * 119.99672 * 65.00228 * 13 2 1 16 16 C 1.39269 * 119.99522 * 185.18442 * 15 13 2 17 17 C 1.39681 * 119.57059 * 174.82453 * 16 15 13 18 18 C 1.38657 * 119.49268 * 179.97438 * 17 16 15 19 19 C 1.38346 * 118.67068 * 359.74604 * 18 17 16 20 20 C 1.40581 * 119.13009 * 0.52141 * 19 18 17 21 21 C 1.41339 * 119.79025 * 179.74754 * 20 19 18 22 22 H 1.07997 * 119.99426 * 4.87194 * 21 20 19 23 23 C 1.40021 * 120.00004 * 184.86971 * 21 20 19 24 24 N 1.30744 * 120.00370 * 354.86111 * 23 21 20 25 25 Si 1.86806 * 119.99934 * 174.85907 * 23 21 20 26 26 H 1.48504 * 109.46998 * 275.00149 * 25 23 21 27 27 H 1.48503 * 109.46986 * 35.00234 * 25 23 21 28 28 H 1.48496 * 109.46975 * 155.00142 * 25 23 21 29 29 N 1.31903 * 119.58060 * 354.84421 * 16 15 13 30 30 H 1.08989 * 109.47310 * 179.97438 * 1 2 3 31 31 H 1.09005 * 109.46406 * 299.99555 * 1 2 3 32 32 H 1.09005 * 109.47073 * 59.99040 * 1 2 3 33 33 H 1.08999 * 109.47388 * 300.00044 * 5 4 2 34 34 H 1.09010 * 109.47038 * 60.00262 * 5 4 2 35 35 H 1.09005 * 109.52145 * 302.31192 * 8 6 5 36 36 H 1.08992 * 109.52604 * 62.50269 * 8 6 5 37 37 H 1.08997 * 109.54675 * 297.11593 * 9 8 6 38 38 H 1.08998 * 109.54459 * 176.83948 * 9 8 6 39 39 H 1.09000 * 109.52654 * 183.11274 * 10 9 8 40 40 H 1.09005 * 109.52397 * 62.92283 * 10 9 8 41 41 H 1.08997 * 109.47810 * 297.61941 * 11 10 9 42 42 H 1.09003 * 109.47698 * 177.59045 * 11 10 9 43 43 H 0.96992 * 120.00371 * 5.18707 * 15 13 2 44 44 H 1.07999 * 120.25315 * 359.97438 * 17 16 15 45 45 H 1.07995 * 120.66237 * 179.97438 * 18 17 16 46 46 H 1.07996 * 120.43575 * 180.24426 * 19 18 17 47 47 H 0.97003 * 120.00419 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 8 2.0064 -0.6738 1.1667 5 6 2.2002 0.1827 2.2940 6 6 2.7080 -0.6412 3.4790 7 1 2.0191 -1.4635 3.6719 8 6 2.7983 0.2511 4.7198 9 6 3.3640 -0.5652 5.8861 10 6 4.7260 -1.1375 5.4811 11 6 4.5612 -1.9760 4.2109 12 8 4.0024 -1.1651 3.1755 13 6 2.0323 -0.7104 -1.2305 14 8 2.6528 -1.7466 -1.1217 15 7 1.7918 -0.1940 -2.4520 16 6 2.1604 -0.9030 -3.5926 17 6 1.8106 -0.4120 -4.8526 18 6 2.1789 -1.1190 -5.9871 19 6 2.8914 -2.2949 -5.8342 20 6 3.2083 -2.7396 -4.5388 21 6 3.9311 -3.9419 -4.3662 22 1 4.3061 -4.4747 -5.2275 23 6 4.1609 -4.4420 -3.0787 24 7 3.7956 -3.7477 -2.0328 25 14 4.9892 -6.1014 -2.8554 26 1 3.9702 -7.1784 -2.9377 27 1 6.0029 -6.2963 -3.9230 28 1 5.6531 -6.1484 -1.5279 29 7 2.8350 -2.0298 -3.4692 30 1 -0.3633 -1.0275 -0.0005 31 1 -0.3632 0.5138 0.8901 32 1 -0.3633 0.5140 -0.8899 33 1 2.9321 0.9510 2.0450 34 1 1.2539 0.6545 2.5589 35 1 3.4556 1.0959 4.5139 36 1 1.8046 0.6162 4.9790 37 1 2.6820 -1.3813 6.1246 38 1 3.4835 0.0785 6.7575 39 1 5.1109 -1.7653 6.2847 40 1 5.4222 -0.3207 5.2905 41 1 3.8966 -2.8159 4.4135 42 1 5.5344 -2.3507 3.8939 43 1 1.3621 0.6714 -2.5367 44 1 1.2576 0.5113 -4.9425 45 1 1.9180 -0.7569 -6.9706 46 1 3.1962 -2.8663 -6.6985 47 1 3.9545 -4.0943 -1.1409 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000882478224.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:09:25 Heat of formation + Delta-G solvation = -75.286841 kcal Electronic energy + Delta-G solvation = -29292.805973 eV Core-core repulsion = 25248.513468 eV Total energy + Delta-G solvation = -4044.292506 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -39.70789 -39.27243 -37.93974 -36.71489 -34.00637 -33.74739 -32.97498 -32.48526 -30.90939 -30.21564 -28.76560 -27.09173 -25.53067 -24.42994 -23.89741 -22.25160 -21.71680 -21.06283 -20.42088 -19.22389 -17.75909 -16.87283 -16.56573 -16.47227 -15.94966 -15.70464 -14.93570 -14.78576 -14.69785 -14.54485 -14.37907 -14.09349 -13.80941 -13.55360 -13.16829 -12.82897 -12.79351 -12.71470 -12.43552 -12.36707 -12.05444 -11.83680 -11.74323 -11.45498 -11.28675 -11.12988 -11.02433 -10.89398 -10.77173 -10.58917 -10.40760 -10.38230 -9.87558 -9.65984 -9.55255 -9.47595 -8.94159 -8.69476 -7.90272 -7.11799 -6.89887 -6.05812 -4.32776 2.85203 3.14059 3.23460 3.25772 3.30870 3.32859 3.71169 3.81088 4.13461 4.15985 4.56929 4.61267 4.68392 4.86355 4.95336 4.99653 5.02047 5.16897 5.22446 5.24513 5.27844 5.35911 5.41700 5.54791 5.57686 5.61990 5.66658 5.71748 5.80583 5.81793 5.91473 6.06320 6.09785 6.17378 6.21631 6.53996 6.73199 6.88782 6.90740 7.21052 7.31471 7.32462 7.62454 7.69990 7.86938 8.13266 8.27529 8.53135 8.82399 9.11873 9.36822 10.31886 10.56954 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.011392 B = 0.003546 C = 0.002789 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2457.168323 B = 7894.375022 C =10035.739130 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.072 3.928 3 H 0.075 0.925 4 O -0.343 6.343 5 C 0.068 3.932 6 C 0.094 3.906 7 H 0.066 0.934 8 C -0.148 4.148 9 C -0.120 4.120 10 C -0.158 4.158 11 C 0.059 3.941 12 O -0.362 6.362 13 C 0.467 3.533 14 O -0.381 6.381 15 N -0.666 5.666 16 C 0.375 3.625 17 C -0.359 4.359 18 C -0.036 4.036 19 C -0.306 4.306 20 C 0.270 3.730 21 C -0.425 4.425 22 H 0.082 0.918 23 C 0.057 3.943 24 N -0.651 5.651 25 Si 0.895 3.105 26 H -0.271 1.271 27 H -0.264 1.264 28 H -0.278 1.278 29 N -0.475 5.475 30 H 0.070 0.930 31 H 0.060 0.940 32 H 0.069 0.931 33 H 0.056 0.944 34 H 0.061 0.939 35 H 0.073 0.927 36 H 0.074 0.926 37 H 0.064 0.936 38 H 0.067 0.933 39 H 0.071 0.929 40 H 0.071 0.929 41 H 0.049 0.951 42 H 0.094 0.906 43 H 0.397 0.603 44 H 0.090 0.910 45 H 0.095 0.905 46 H 0.096 0.904 47 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.177 9.410 15.566 18.663 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.010 3.990 3 H 0.092 0.908 4 O -0.261 6.261 5 C -0.009 4.009 6 C 0.036 3.964 7 H 0.084 0.916 8 C -0.186 4.186 9 C -0.158 4.158 10 C -0.196 4.196 11 C -0.018 4.018 12 O -0.280 6.280 13 C 0.247 3.753 14 O -0.241 6.241 15 N -0.315 5.315 16 C 0.136 3.864 17 C -0.385 4.385 18 C -0.061 4.061 19 C -0.330 4.330 20 C 0.145 3.855 21 C -0.455 4.455 22 H 0.100 0.900 23 C -0.173 4.173 24 N -0.270 5.270 25 Si 0.719 3.281 26 H -0.196 1.196 27 H -0.189 1.189 28 H -0.203 1.203 29 N -0.194 5.194 30 H 0.089 0.911 31 H 0.079 0.921 32 H 0.088 0.912 33 H 0.074 0.926 34 H 0.079 0.921 35 H 0.092 0.908 36 H 0.093 0.907 37 H 0.083 0.917 38 H 0.086 0.914 39 H 0.090 0.910 40 H 0.089 0.911 41 H 0.068 0.932 42 H 0.112 0.888 43 H 0.230 0.770 44 H 0.108 0.892 45 H 0.113 0.887 46 H 0.114 0.886 47 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -3.331 8.091 16.665 18.823 hybrid contribution -0.384 0.438 -0.486 0.758 sum -3.715 8.529 16.180 18.663 Atomic orbital electron populations 1.22203 0.94404 1.03675 1.02206 1.21959 0.94352 0.95984 0.86742 0.90752 1.88140 1.86449 1.33023 1.18450 1.22550 0.98873 0.92955 0.86531 1.22020 0.86066 0.95759 0.92588 0.91626 1.22146 1.02091 0.99207 0.95173 1.21562 0.96837 0.99737 0.97662 1.22231 0.97795 1.00888 0.98644 1.22565 0.99214 0.92503 0.87471 1.88106 1.31720 1.67522 1.40660 1.20407 0.83465 0.87917 0.83535 1.91172 1.30439 1.18494 1.84032 1.43340 1.61673 1.21907 1.04554 1.18591 0.92798 0.91442 0.83589 1.20466 1.20191 1.05714 0.92099 1.20549 0.95361 0.94199 0.95952 1.21611 1.12520 1.00961 0.97868 1.18387 0.89483 0.91735 0.85848 1.19569 1.28586 1.04284 0.93103 0.89994 1.26175 0.96226 0.98502 0.96374 1.70276 1.25610 1.32489 0.98587 0.86554 0.80034 0.83096 0.78404 1.19620 1.18870 1.20321 1.68703 1.15156 1.04487 1.31037 0.91128 0.92095 0.91158 0.92562 0.92129 0.90824 0.90749 0.91718 0.91431 0.90990 0.91073 0.93223 0.88771 0.77006 0.89155 0.88695 0.88624 0.91272 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.08 9.48 37.16 0.35 -1.73 16 2 C 0.07 1.12 3.13 -27.88 -0.09 1.03 16 3 H 0.07 0.95 7.79 -51.93 -0.40 0.54 16 4 O -0.34 -5.98 9.49 -59.69 -0.57 -6.55 16 5 C 0.07 0.86 5.41 37.16 0.20 1.07 16 6 C 0.09 1.16 2.93 -26.68 -0.08 1.08 16 7 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 8 C -0.15 -1.31 5.42 -26.59 -0.14 -1.46 16 9 C -0.12 -0.97 6.03 -26.54 -0.16 -1.13 16 10 C -0.16 -1.41 6.14 -26.59 -0.16 -1.57 16 11 C 0.06 0.70 6.84 37.21 0.25 0.95 16 12 O -0.36 -5.57 10.37 -40.07 -0.42 -5.98 16 13 C 0.47 9.99 7.14 -10.98 -0.08 9.91 16 14 O -0.38 -10.33 12.29 -14.30 -0.18 -10.51 16 15 N -0.67 -13.48 5.34 -11.40 -0.06 -13.54 16 16 C 0.37 9.39 7.43 -154.97 -1.15 8.24 16 17 C -0.36 -8.22 9.96 -38.89 -0.39 -8.61 16 18 C -0.04 -0.85 10.15 -39.39 -0.40 -1.25 16 19 C -0.31 -7.92 9.83 -38.66 -0.38 -8.30 16 20 C 0.27 7.83 6.55 -85.00 -0.56 7.27 16 21 C -0.43 -12.05 9.13 -37.74 -0.34 -12.39 16 22 H 0.08 2.17 7.85 -52.49 -0.41 1.76 16 23 C 0.06 1.56 5.49 -17.35 -0.10 1.46 16 24 N -0.65 -18.93 9.02 55.55 0.50 -18.43 16 25 Si 0.89 19.99 29.56 -169.99 -5.03 14.97 16 26 H -0.27 -5.97 7.11 56.52 0.40 -5.57 16 27 H -0.26 -5.75 7.11 56.52 0.40 -5.35 16 28 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 29 N -0.47 -13.79 5.75 -10.25 -0.06 -13.85 16 30 H 0.07 1.02 8.14 -51.94 -0.42 0.60 16 31 H 0.06 0.60 7.87 -51.93 -0.41 0.19 16 32 H 0.07 0.76 8.11 -51.93 -0.42 0.34 16 33 H 0.06 0.70 8.08 -51.93 -0.42 0.28 16 34 H 0.06 0.58 7.87 -51.92 -0.41 0.17 16 35 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 36 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 37 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 38 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 39 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 40 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 41 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 42 H 0.09 1.07 8.14 -51.93 -0.42 0.64 16 43 H 0.40 6.07 8.66 -40.82 -0.35 5.72 16 44 H 0.09 1.76 8.06 -52.49 -0.42 1.33 16 45 H 0.09 1.87 8.06 -52.49 -0.42 1.44 16 46 H 0.10 2.29 8.06 -52.49 -0.42 1.87 16 47 H 0.28 7.64 8.29 -40.82 -0.34 7.30 16 LS Contribution 384.31 15.07 5.79 5.79 Total: -1.00 -36.00 384.31 -10.69 -46.69 By element: Atomic # 1 Polarization: 14.28 SS G_CDS: -7.46 Total: 6.82 kcal Atomic # 6 Polarization: -2.19 SS G_CDS: -3.22 Total: -5.41 kcal Atomic # 7 Polarization: -46.20 SS G_CDS: 0.38 Total: -45.82 kcal Atomic # 8 Polarization: -21.88 SS G_CDS: -1.16 Total: -23.04 kcal Atomic # 14 Polarization: 19.99 SS G_CDS: -5.03 Total: 14.97 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -36.00 -10.69 -46.69 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000882478224.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.598 kcal (2) G-P(sol) polarization free energy of solvation -36.002 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.600 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.687 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.689 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.287 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds