Wall clock time and date at job start Tue Mar 31 2020 18:09:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09003 * 109.47299 * 2 1 4 4 O 1.42904 * 109.47114 * 120.00791 * 2 1 3 5 5 C 1.42895 * 113.99623 * 269.99362 * 4 2 1 6 6 C 1.53002 * 109.46900 * 179.97438 * 5 4 2 7 7 H 1.08996 * 109.48180 * 304.97511 * 6 5 4 8 8 C 1.53093 * 109.47907 * 184.94677 * 6 5 4 9 9 C 1.53181 * 109.16286 * 182.40828 * 8 6 5 10 10 C 1.53183 * 109.03508 * 56.97805 * 9 8 6 11 11 C 1.53096 * 109.16176 * 303.02311 * 10 9 8 12 12 O 1.42895 * 109.48098 * 65.00284 * 6 5 4 13 13 C 1.50701 * 109.46742 * 240.00307 * 2 1 3 14 14 O 1.21272 * 120.00069 * 245.00274 * 13 2 1 15 15 N 1.34782 * 119.99672 * 65.00228 * 13 2 1 16 16 C 1.39269 * 119.99522 * 185.18442 * 15 13 2 17 17 C 1.39681 * 119.57059 * 174.82453 * 16 15 13 18 18 C 1.38657 * 119.49268 * 179.97438 * 17 16 15 19 19 C 1.38346 * 118.67068 * 359.74604 * 18 17 16 20 20 C 1.40581 * 119.13009 * 0.52141 * 19 18 17 21 21 C 1.41339 * 119.79025 * 179.74754 * 20 19 18 22 22 H 1.07997 * 119.99426 * 4.87194 * 21 20 19 23 23 C 1.40021 * 120.00004 * 184.86971 * 21 20 19 24 24 N 1.30744 * 120.00370 * 354.86111 * 23 21 20 25 25 Si 1.86806 * 119.99934 * 174.85907 * 23 21 20 26 26 H 1.48504 * 109.46998 * 275.00149 * 25 23 21 27 27 H 1.48503 * 109.46986 * 35.00234 * 25 23 21 28 28 H 1.48496 * 109.46975 * 155.00142 * 25 23 21 29 29 N 1.31903 * 119.58060 * 354.84421 * 16 15 13 30 30 H 1.08989 * 109.47310 * 179.97438 * 1 2 3 31 31 H 1.09005 * 109.46406 * 299.99555 * 1 2 3 32 32 H 1.09005 * 109.47073 * 59.99040 * 1 2 3 33 33 H 1.08999 * 109.47388 * 300.00044 * 5 4 2 34 34 H 1.09010 * 109.47038 * 60.00262 * 5 4 2 35 35 H 1.09005 * 109.52145 * 302.31192 * 8 6 5 36 36 H 1.08992 * 109.52604 * 62.50269 * 8 6 5 37 37 H 1.08997 * 109.54675 * 297.11593 * 9 8 6 38 38 H 1.08998 * 109.54459 * 176.83948 * 9 8 6 39 39 H 1.09000 * 109.52654 * 183.11274 * 10 9 8 40 40 H 1.09005 * 109.52397 * 62.92283 * 10 9 8 41 41 H 1.08997 * 109.47810 * 297.61941 * 11 10 9 42 42 H 1.09003 * 109.47698 * 177.59045 * 11 10 9 43 43 H 0.96992 * 120.00371 * 5.18707 * 15 13 2 44 44 H 1.07999 * 120.25315 * 359.97438 * 17 16 15 45 45 H 1.07995 * 120.66237 * 179.97438 * 18 17 16 46 46 H 1.07996 * 120.43575 * 180.24426 * 19 18 17 47 47 H 0.97003 * 120.00419 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 8 2.0064 -0.6738 1.1667 5 6 2.2002 0.1827 2.2940 6 6 2.7080 -0.6412 3.4790 7 1 2.0191 -1.4635 3.6719 8 6 2.7983 0.2511 4.7198 9 6 3.3640 -0.5652 5.8861 10 6 4.7260 -1.1375 5.4811 11 6 4.5612 -1.9760 4.2109 12 8 4.0024 -1.1651 3.1755 13 6 2.0323 -0.7104 -1.2305 14 8 2.6528 -1.7466 -1.1217 15 7 1.7918 -0.1940 -2.4520 16 6 2.1604 -0.9030 -3.5926 17 6 1.8106 -0.4120 -4.8526 18 6 2.1789 -1.1190 -5.9871 19 6 2.8914 -2.2949 -5.8342 20 6 3.2083 -2.7396 -4.5388 21 6 3.9311 -3.9419 -4.3662 22 1 4.3061 -4.4747 -5.2275 23 6 4.1609 -4.4420 -3.0787 24 7 3.7956 -3.7477 -2.0328 25 14 4.9892 -6.1014 -2.8554 26 1 3.9702 -7.1784 -2.9377 27 1 6.0029 -6.2963 -3.9230 28 1 5.6531 -6.1484 -1.5279 29 7 2.8350 -2.0298 -3.4692 30 1 -0.3633 -1.0275 -0.0005 31 1 -0.3632 0.5138 0.8901 32 1 -0.3633 0.5140 -0.8899 33 1 2.9321 0.9510 2.0450 34 1 1.2539 0.6545 2.5589 35 1 3.4556 1.0959 4.5139 36 1 1.8046 0.6162 4.9790 37 1 2.6820 -1.3813 6.1246 38 1 3.4835 0.0785 6.7575 39 1 5.1109 -1.7653 6.2847 40 1 5.4222 -0.3207 5.2905 41 1 3.8966 -2.8159 4.4135 42 1 5.5344 -2.3507 3.8939 43 1 1.3621 0.6714 -2.5367 44 1 1.2576 0.5113 -4.9425 45 1 1.9180 -0.7569 -6.9706 46 1 3.1962 -2.8663 -6.6985 47 1 3.9545 -4.0943 -1.1409 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000882478224.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:09:23 Heat of formation + Delta-G solvation = -98.602005 kcal Electronic energy + Delta-G solvation = -29293.816995 eV Core-core repulsion = 25248.513468 eV Total energy + Delta-G solvation = -4045.303527 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.13073 -40.45682 -39.56166 -38.20467 -35.89686 -34.86801 -34.56732 -33.50271 -32.27243 -32.01378 -30.57583 -27.99139 -27.49575 -25.58068 -24.97007 -23.55539 -23.14669 -22.86714 -21.26156 -20.84052 -19.61053 -18.22621 -18.02246 -17.63614 -17.27430 -16.89770 -16.41345 -16.25128 -16.18490 -15.89499 -15.53664 -15.37999 -15.28844 -15.02323 -14.66637 -14.45073 -14.03706 -13.73246 -13.64082 -13.55640 -13.33611 -13.21417 -12.96351 -12.88390 -12.73266 -12.55538 -12.31949 -12.28333 -12.13640 -11.99360 -11.77764 -11.59501 -11.48284 -11.24851 -10.86510 -10.82716 -10.39537 -10.33823 -9.89659 -9.04207 -8.81253 -8.04551 -6.41887 0.92885 1.26284 1.36848 1.50620 1.51485 1.98782 2.15063 2.25440 2.81400 2.91826 2.99785 3.72668 3.84836 3.90298 3.93836 3.97493 4.03334 4.06427 4.14716 4.17737 4.30408 4.38786 4.39569 4.47771 4.63793 4.67785 4.72925 4.74938 4.82648 4.85985 4.90712 4.92591 4.97023 5.04736 5.08062 5.08876 5.14931 5.22293 5.27749 5.36154 5.69047 5.86474 5.93225 6.11271 6.20719 6.35769 6.40423 6.75612 6.87688 7.08069 7.73488 8.36462 8.56907 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.011392 B = 0.003546 C = 0.002789 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2457.168323 B = 7894.375022 C =10035.739130 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.082 3.918 3 H 0.111 0.889 4 O -0.386 6.386 5 C 0.062 3.938 6 C 0.085 3.915 7 H 0.054 0.946 8 C -0.140 4.140 9 C -0.121 4.121 10 C -0.151 4.151 11 C 0.050 3.950 12 O -0.404 6.404 13 C 0.454 3.546 14 O -0.447 6.447 15 N -0.651 5.651 16 C 0.349 3.651 17 C -0.343 4.343 18 C -0.035 4.035 19 C -0.330 4.330 20 C 0.236 3.764 21 C -0.467 4.467 22 H 0.087 0.913 23 C 0.010 3.990 24 N -0.691 5.691 25 Si 0.973 3.027 26 H -0.264 1.264 27 H -0.252 1.252 28 H -0.277 1.277 29 N -0.513 5.513 30 H 0.042 0.958 31 H 0.097 0.903 32 H 0.091 0.909 33 H 0.057 0.943 34 H 0.100 0.900 35 H 0.074 0.926 36 H 0.099 0.901 37 H 0.067 0.933 38 H 0.090 0.910 39 H 0.089 0.911 40 H 0.068 0.932 41 H 0.047 0.953 42 H 0.087 0.913 43 H 0.421 0.579 44 H 0.136 0.864 45 H 0.139 0.861 46 H 0.104 0.896 47 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.707 11.866 16.426 21.052 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.021 3.979 3 H 0.128 0.872 4 O -0.304 6.304 5 C -0.014 4.014 6 C 0.028 3.972 7 H 0.072 0.928 8 C -0.177 4.177 9 C -0.158 4.158 10 C -0.189 4.189 11 C -0.026 4.026 12 O -0.324 6.324 13 C 0.237 3.763 14 O -0.312 6.312 15 N -0.302 5.302 16 C 0.110 3.890 17 C -0.368 4.368 18 C -0.059 4.059 19 C -0.353 4.353 20 C 0.110 3.890 21 C -0.498 4.498 22 H 0.105 0.895 23 C -0.216 4.216 24 N -0.310 5.310 25 Si 0.794 3.206 26 H -0.189 1.189 27 H -0.176 1.176 28 H -0.202 1.202 29 N -0.232 5.232 30 H 0.061 0.939 31 H 0.116 0.884 32 H 0.109 0.891 33 H 0.075 0.925 34 H 0.118 0.882 35 H 0.093 0.907 36 H 0.118 0.882 37 H 0.085 0.915 38 H 0.108 0.892 39 H 0.108 0.892 40 H 0.087 0.913 41 H 0.065 0.935 42 H 0.105 0.895 43 H 0.259 0.741 44 H 0.153 0.847 45 H 0.157 0.843 46 H 0.123 0.877 47 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -4.902 10.619 17.518 21.064 hybrid contribution 0.003 -0.150 -0.842 0.856 sum -4.899 10.469 16.676 20.290 Atomic orbital electron populations 1.22180 0.91553 1.02745 1.05058 1.21948 0.96161 0.96155 0.83658 0.87155 1.88109 1.86958 1.35452 1.19916 1.22871 1.00848 0.92500 0.85151 1.22267 0.84602 0.96168 0.94208 0.92770 1.22109 1.03679 0.98420 0.93503 1.21609 0.95996 1.00128 0.98054 1.22176 0.98719 1.00583 0.97388 1.22717 0.98649 0.92875 0.88383 1.88041 1.33287 1.68290 1.42806 1.21642 0.82034 0.87460 0.85180 1.91166 1.33353 1.21547 1.85137 1.43302 1.61023 1.22485 1.03399 1.19168 0.92580 0.91174 0.86060 1.20989 1.18292 1.06542 0.90990 1.21055 0.93683 0.92919 0.98214 1.21803 1.13812 1.02596 0.97057 1.18896 0.90273 0.92503 0.87322 1.19891 1.30566 1.05434 0.93929 0.89524 1.27068 0.96461 1.02398 0.95630 1.70524 1.27609 1.34370 0.98489 0.85374 0.79054 0.77816 0.78391 1.18875 1.17571 1.20180 1.68665 1.16502 1.06213 1.31869 0.93923 0.88416 0.89068 0.92481 0.88179 0.90689 0.88210 0.91452 0.89180 0.89199 0.91332 0.93499 0.89503 0.74074 0.84654 0.84338 0.87741 0.92160 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.53 9.48 71.98 0.68 -2.85 16 2 C 0.08 2.47 3.13 29.85 0.09 2.56 16 3 H 0.11 2.48 7.79 -2.39 -0.02 2.46 16 4 O -0.39 -13.53 9.49 -125.59 -1.19 -14.72 16 5 C 0.06 1.50 5.41 71.98 0.39 1.89 16 6 C 0.09 2.09 2.93 30.63 0.09 2.18 16 7 H 0.05 1.40 8.14 -2.39 -0.02 1.38 16 8 C -0.14 -2.17 5.42 30.69 0.17 -2.00 16 9 C -0.12 -1.68 6.03 30.72 0.19 -1.50 16 10 C -0.15 -2.56 6.14 30.69 0.19 -2.37 16 11 C 0.05 1.24 6.84 72.01 0.49 1.73 16 12 O -0.40 -13.04 10.37 -144.35 -1.50 -14.53 16 13 C 0.45 19.77 7.14 87.66 0.63 20.39 16 14 O -0.45 -25.68 12.29 15.99 0.20 -25.49 16 15 N -0.65 -25.90 5.34 -308.36 -1.65 -27.55 16 16 C 0.35 17.50 7.43 133.25 0.99 18.49 16 17 C -0.34 -14.88 9.96 22.72 0.23 -14.66 16 18 C -0.03 -1.53 10.15 22.40 0.23 -1.31 16 19 C -0.33 -17.20 9.83 22.87 0.22 -16.98 16 20 C 0.24 14.20 6.55 40.20 0.26 14.47 16 21 C -0.47 -27.87 9.13 23.47 0.21 -27.65 16 22 H 0.09 4.81 7.85 -2.91 -0.02 4.79 16 23 C 0.01 0.56 5.49 85.29 0.47 1.03 16 24 N -0.69 -42.89 9.02 21.84 0.20 -42.69 16 25 Si 0.97 43.25 29.56 68.60 2.03 45.28 16 26 H -0.26 -11.30 7.11 99.48 0.71 -10.60 16 27 H -0.25 -10.56 7.11 99.48 0.71 -9.85 16 28 H -0.28 -12.06 7.11 99.48 0.71 -11.35 16 29 N -0.51 -30.96 5.75 -186.35 -1.07 -32.03 16 30 H 0.04 1.20 8.14 -2.39 -0.02 1.18 16 31 H 0.10 1.49 7.87 -2.38 -0.02 1.47 16 32 H 0.09 1.63 8.11 -2.38 -0.02 1.62 16 33 H 0.06 1.34 8.08 -2.39 -0.02 1.32 16 34 H 0.10 1.56 7.87 -2.38 -0.02 1.54 16 35 H 0.07 1.16 8.14 -2.38 -0.02 1.14 16 36 H 0.10 1.05 8.14 -2.39 -0.02 1.03 16 37 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 38 H 0.09 0.90 8.14 -2.39 -0.02 0.88 16 39 H 0.09 1.19 8.14 -2.39 -0.02 1.17 16 40 H 0.07 1.20 8.14 -2.38 -0.02 1.18 16 41 H 0.05 1.13 8.14 -2.39 -0.02 1.11 16 42 H 0.09 2.15 8.14 -2.39 -0.02 2.13 16 43 H 0.42 11.79 8.66 -92.71 -0.80 10.98 16 44 H 0.14 4.60 8.06 -2.91 -0.02 4.57 16 45 H 0.14 4.88 8.06 -2.91 -0.02 4.86 16 46 H 0.10 5.07 8.06 -2.91 -0.02 5.05 16 47 H 0.27 16.04 8.29 -92.71 -0.77 15.27 16 Total: -1.00 -86.79 384.31 2.71 -84.09 By element: Atomic # 1 Polarization: 34.04 SS G_CDS: 0.17 Total: 34.21 kcal Atomic # 6 Polarization: -12.10 SS G_CDS: 5.53 Total: -6.57 kcal Atomic # 7 Polarization: -99.75 SS G_CDS: -2.52 Total: -102.27 kcal Atomic # 8 Polarization: -52.25 SS G_CDS: -2.49 Total: -54.74 kcal Atomic # 14 Polarization: 43.25 SS G_CDS: 2.03 Total: 45.28 kcal Total: -86.79 2.71 -84.09 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000882478224.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.515 kcal (2) G-P(sol) polarization free energy of solvation -86.793 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.308 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.706 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.087 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.602 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds