Wall clock time and date at job start Tue Mar 31 2020 18:37:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46507 * 109.46818 * 2 1 4 4 C 1.46496 * 120.00220 * 87.01918 * 3 2 1 5 5 C 1.53006 * 109.47268 * 296.19793 * 4 3 2 6 6 C 1.53783 * 113.61463 * 89.71204 * 5 4 3 7 7 C 1.54056 * 86.98179 * 140.02415 * 6 5 4 8 8 C 1.53769 * 113.61759 * 187.32459 * 5 4 3 9 9 S 1.65601 * 119.99919 * 267.01572 * 3 2 1 10 10 O 1.42100 * 106.40009 * 23.54163 * 9 3 2 11 11 O 1.42097 * 106.40072 * 156.46150 * 9 3 2 12 12 N 1.65597 * 107.21908 * 270.00166 * 9 3 2 13 13 C 1.46500 * 119.99971 * 89.99901 * 12 9 3 14 14 C 1.50704 * 109.47037 * 95.00113 * 13 12 9 15 15 H 1.08000 * 119.99789 * 0.02562 * 14 13 12 16 16 C 1.37873 * 119.99793 * 179.97438 * 14 13 12 17 17 N 1.31519 * 119.99737 * 179.97438 * 16 14 13 18 18 Si 1.86797 * 120.00504 * 0.02562 * 16 14 13 19 19 H 1.48504 * 109.47086 * 89.99823 * 18 16 14 20 20 H 1.48498 * 109.47425 * 210.00010 * 18 16 14 21 21 H 1.48503 * 109.46992 * 330.00352 * 18 16 14 22 22 C 1.46500 * 120.00150 * 270.00373 * 12 9 3 23 23 C 1.52990 * 109.47310 * 94.99946 * 22 12 9 24 24 O 1.42893 * 109.47540 * 65.00228 * 23 22 12 25 25 C 1.42906 * 114.00462 * 180.02562 * 24 23 22 26 26 H 1.09001 * 109.47203 * 187.84582 * 1 2 3 27 27 H 1.09003 * 109.47143 * 307.85042 * 1 2 3 28 28 H 1.08998 * 109.47339 * 67.85084 * 1 2 3 29 29 H 1.08998 * 109.47222 * 240.00365 * 2 1 3 30 30 H 1.08994 * 109.47099 * 119.99895 * 2 1 3 31 31 H 1.08999 * 109.47651 * 176.19318 * 4 3 2 32 32 H 1.09008 * 109.47075 * 56.19184 * 4 3 2 33 33 H 1.09004 * 112.84552 * 318.52670 * 5 4 3 34 34 H 1.08997 * 113.61774 * 254.61400 * 6 5 4 35 35 H 1.09002 * 113.61337 * 25.52205 * 6 5 4 36 36 H 1.08994 * 113.61715 * 220.02352 * 7 6 5 37 37 H 1.08995 * 113.61133 * 89.11514 * 7 6 5 38 38 H 1.09000 * 113.61513 * 334.48327 * 8 5 4 39 39 H 1.09005 * 113.61653 * 105.29819 * 8 5 4 40 40 H 1.09000 * 109.47434 * 215.00023 * 13 12 9 41 41 H 1.08997 * 109.47191 * 335.00063 * 13 12 9 42 42 H 0.96999 * 119.99728 * 180.02562 * 17 16 14 43 43 H 1.09000 * 109.46823 * 215.00040 * 22 12 9 44 44 H 1.08997 * 109.46788 * 334.99548 * 22 12 9 45 45 H 1.09002 * 109.47170 * 185.00387 * 23 22 12 46 46 H 1.09000 * 109.47497 * 304.99778 * 23 22 12 47 47 H 1.09000 * 109.46980 * 59.99839 * 25 24 23 48 48 H 1.08998 * 109.47182 * 179.97438 * 25 24 23 49 49 H 1.09001 * 109.46501 * 300.00124 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2002 2.0939 1.2669 5 6 0.8454 2.2584 1.9588 6 6 0.4866 1.0929 2.8956 7 6 -0.0732 2.1514 3.8649 8 6 0.8973 3.1491 3.2111 9 16 2.3646 2.1371 -1.4322 10 8 1.6058 1.4701 -2.4316 11 8 2.2660 3.5326 -1.1836 12 7 3.9564 1.8343 -1.7739 13 6 4.3254 0.6534 -2.5584 14 6 4.4597 1.0365 -4.0098 15 1 4.2878 2.0575 -4.3169 16 6 4.8030 0.0837 -4.9453 17 7 4.9197 0.4179 -6.2120 18 14 5.1011 -1.6822 -4.4141 19 1 3.8252 -2.4397 -4.4755 20 1 6.0944 -2.3111 -5.3212 21 1 5.6205 -1.6996 -3.0229 22 6 4.9957 2.7472 -1.2914 23 6 5.5589 2.2253 0.0318 24 8 6.2236 0.9802 -0.1915 25 6 6.7886 0.4032 0.9875 26 1 -0.3634 -1.0180 0.1403 27 1 -0.3633 0.6306 0.8115 28 1 -0.3634 0.3874 -0.9518 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8899 31 1 2.6307 3.0763 1.0728 32 1 2.8703 1.5245 1.9112 33 1 0.0463 2.5241 1.2667 34 1 -0.2732 0.4248 2.4902 35 1 1.3555 0.5614 3.2839 36 1 0.1507 1.9466 4.9118 37 1 -1.1233 2.3879 3.6940 38 1 1.8782 3.1788 3.6855 39 1 0.4702 4.1405 3.0599 40 1 5.2755 0.2595 -2.1973 41 1 3.5529 -0.1083 -2.4537 42 1 5.1609 -0.2526 -6.8702 43 1 5.7965 2.8081 -2.0284 44 1 4.5668 3.7375 -1.1384 45 1 6.2678 2.9483 0.4354 46 1 4.7444 2.0802 0.7414 47 1 5.9992 0.2202 1.7166 48 1 7.2741 -0.5392 0.7341 49 1 7.5228 1.0883 1.4113 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000885425862.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:37:58 Heat of formation + Delta-G solvation = -92.715895 kcal Electronic energy + Delta-G solvation = -29952.772678 eV Core-core repulsion = 26043.168344 eV Total energy + Delta-G solvation = -3909.604335 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 334.176 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -39.39200 -37.91768 -36.73513 -35.94919 -35.45373 -35.15000 -32.41087 -30.88223 -29.80084 -27.66939 -27.16033 -25.84435 -25.76132 -23.12296 -22.63792 -22.31687 -21.54786 -19.57357 -18.43896 -17.49268 -17.06050 -16.64235 -16.36373 -15.97717 -15.75726 -15.41156 -15.07446 -14.85494 -14.48898 -14.03075 -13.89169 -13.57780 -13.32212 -13.08915 -12.69363 -12.58059 -12.51430 -12.35636 -12.31318 -12.08702 -11.79978 -11.76273 -11.63500 -11.45674 -11.35428 -11.29811 -11.16131 -10.91595 -10.77113 -10.58964 -10.55894 -10.40300 -10.30369 -10.25712 -10.12825 -9.47991 -9.46345 -8.90078 -8.49188 -8.03715 -5.99483 -3.97182 1.13490 3.33443 3.38095 3.42686 3.43408 3.97648 4.03758 4.42608 4.47591 4.50223 4.56353 4.67582 4.88551 4.95316 5.19238 5.23588 5.26011 5.29897 5.33167 5.37725 5.41703 5.47008 5.48854 5.52880 5.53937 5.56196 5.59700 5.67746 5.71624 5.75260 5.79359 5.80002 5.87961 5.90003 6.07421 6.22498 6.32892 6.36864 6.39729 6.46215 6.78598 6.96512 7.25838 7.38504 7.50498 7.70848 8.58292 9.04829 9.60692 11.14306 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.013707 B = 0.004727 C = 0.004302 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2042.242968 B = 5921.509176 C = 6506.298582 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.127 3.873 3 N -1.009 6.009 4 C 0.131 3.869 5 C -0.123 4.123 6 C -0.139 4.139 7 C -0.143 4.143 8 C -0.136 4.136 9 S 2.774 3.226 10 O -0.957 6.957 11 O -0.994 6.994 12 N -0.979 5.979 13 C 0.230 3.770 14 C -0.527 4.527 15 H 0.075 0.925 16 C 0.073 3.927 17 N -0.899 5.899 18 Si 0.869 3.131 19 H -0.274 1.274 20 H -0.286 1.286 21 H -0.261 1.261 22 C 0.121 3.879 23 C 0.041 3.959 24 O -0.370 6.370 25 C 0.031 3.969 26 H 0.061 0.939 27 H 0.070 0.930 28 H 0.063 0.937 29 H 0.080 0.920 30 H 0.071 0.929 31 H 0.087 0.913 32 H 0.065 0.935 33 H 0.095 0.905 34 H 0.073 0.927 35 H 0.080 0.920 36 H 0.064 0.936 37 H 0.078 0.922 38 H 0.081 0.919 39 H 0.068 0.932 40 H 0.050 0.950 41 H 0.022 0.978 42 H 0.263 0.737 43 H 0.098 0.902 44 H 0.095 0.905 45 H 0.053 0.947 46 H 0.043 0.957 47 H 0.034 0.966 48 H 0.081 0.919 49 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.918 1.009 22.684 23.042 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.245 4.245 2 C 0.001 3.999 3 N -0.847 5.847 4 C 0.005 3.995 5 C -0.143 4.143 6 C -0.177 4.177 7 C -0.180 4.180 8 C -0.174 4.174 9 S 2.783 3.217 10 O -0.940 6.940 11 O -0.978 6.978 12 N -0.819 5.819 13 C 0.106 3.894 14 C -0.566 4.566 15 H 0.093 0.907 16 C -0.129 4.129 17 N -0.538 5.538 18 Si 0.696 3.304 19 H -0.200 1.200 20 H -0.212 1.212 21 H -0.185 1.185 22 C -0.006 4.006 23 C -0.037 4.037 24 O -0.288 6.288 25 C -0.066 4.066 26 H 0.080 0.920 27 H 0.089 0.911 28 H 0.082 0.918 29 H 0.098 0.902 30 H 0.089 0.911 31 H 0.105 0.895 32 H 0.084 0.916 33 H 0.113 0.887 34 H 0.091 0.909 35 H 0.098 0.902 36 H 0.083 0.917 37 H 0.096 0.904 38 H 0.099 0.901 39 H 0.087 0.913 40 H 0.068 0.932 41 H 0.039 0.961 42 H 0.073 0.927 43 H 0.116 0.884 44 H 0.113 0.887 45 H 0.071 0.929 46 H 0.061 0.939 47 H 0.053 0.947 48 H 0.100 0.900 49 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -4.454 1.334 21.767 22.258 hybrid contribution 0.469 -1.154 0.644 1.402 sum -3.985 0.180 22.411 22.764 Atomic orbital electron populations 1.22539 0.96407 1.02192 1.03373 1.21090 0.94368 0.81593 1.02819 1.58287 1.80465 1.23730 1.22174 1.21289 0.96329 0.96747 0.85120 1.22980 0.98523 0.97068 0.95699 1.23215 1.01190 0.96397 0.96858 1.22850 0.99224 0.97269 0.98696 1.22905 0.99949 0.98080 0.96483 1.02269 0.73625 0.73098 0.72688 1.93630 1.69080 1.75716 1.55617 1.93513 1.86892 1.31398 1.86005 1.57491 1.22735 1.36298 1.65367 1.19481 0.96813 0.81884 0.91174 1.21404 1.47131 0.98089 0.90003 0.90654 1.24832 0.94816 0.98549 0.94715 1.69905 1.48499 1.34270 1.01081 0.86948 0.78515 0.85635 0.79306 1.20014 1.21155 1.18516 1.21296 0.92778 0.91978 0.94517 1.23223 0.95550 0.86266 0.98703 1.88101 1.73159 1.36578 1.30964 1.22700 0.96905 0.98474 0.88548 0.92012 0.91146 0.91759 0.90151 0.91056 0.89457 0.91626 0.88679 0.90861 0.90178 0.91711 0.90375 0.90075 0.91335 0.93167 0.96051 0.92694 0.88415 0.88733 0.92883 0.93873 0.94705 0.89996 0.94605 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.28 9.67 37.16 0.36 -1.92 16 2 C 0.13 1.70 5.55 -4.04 -0.02 1.67 16 3 N -1.01 -14.74 3.01 -114.38 -0.34 -15.09 16 4 C 0.13 1.51 4.42 -4.04 -0.02 1.50 16 5 C -0.12 -1.24 2.68 -89.81 -0.24 -1.48 16 6 C -0.14 -1.16 6.51 -25.77 -0.17 -1.33 16 7 C -0.14 -1.08 8.09 -25.77 -0.21 -1.29 16 8 C -0.14 -1.14 7.64 -25.93 -0.20 -1.33 16 9 S 2.77 54.71 6.00 -107.50 -0.65 54.07 16 10 O -0.96 -22.74 16.00 -57.17 -0.91 -23.66 16 11 O -0.99 -20.26 15.30 -57.17 -0.87 -21.13 16 12 N -0.98 -20.01 2.81 -115.67 -0.33 -20.33 16 13 C 0.23 5.52 4.01 -5.19 -0.02 5.50 16 14 C -0.53 -15.28 9.94 -34.44 -0.34 -15.62 16 15 H 0.08 2.39 8.06 -52.49 -0.42 1.97 16 16 C 0.07 2.16 5.47 -17.82 -0.10 2.06 16 17 N -0.90 -28.13 13.96 55.43 0.77 -27.36 16 18 Si 0.87 21.59 27.47 -169.99 -4.67 16.92 16 19 H -0.27 -6.74 7.11 56.52 0.40 -6.34 16 20 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 21 H -0.26 -6.08 6.54 56.52 0.37 -5.71 16 22 C 0.12 2.07 6.13 -4.05 -0.02 2.05 16 23 C 0.04 0.57 6.28 37.15 0.23 0.80 16 24 O -0.37 -5.87 9.02 -35.23 -0.32 -6.19 16 25 C 0.03 0.35 11.01 101.05 1.11 1.47 16 26 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 27 H 0.07 0.75 3.39 -51.93 -0.18 0.58 16 28 H 0.06 0.93 8.02 -51.93 -0.42 0.52 16 29 H 0.08 1.23 7.37 -51.93 -0.38 0.85 16 30 H 0.07 0.76 8.09 -51.93 -0.42 0.34 16 31 H 0.09 1.05 6.96 -51.93 -0.36 0.69 16 32 H 0.07 0.63 7.60 -51.92 -0.39 0.24 16 33 H 0.10 1.09 7.44 -51.93 -0.39 0.70 16 34 H 0.07 0.61 6.20 -51.93 -0.32 0.29 16 35 H 0.08 0.62 7.87 -51.93 -0.41 0.22 16 36 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 37 H 0.08 0.58 8.14 -51.93 -0.42 0.15 16 38 H 0.08 0.60 8.10 -51.93 -0.42 0.18 16 39 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 40 H 0.05 1.20 5.66 -51.93 -0.29 0.90 16 41 H 0.02 0.52 6.72 -51.93 -0.35 0.17 16 42 H 0.26 7.69 8.31 -40.82 -0.34 7.35 16 43 H 0.10 1.79 8.11 -51.93 -0.42 1.37 16 44 H 0.09 1.47 6.91 -51.93 -0.36 1.12 16 45 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 46 H 0.04 0.53 6.62 -51.93 -0.34 0.19 16 47 H 0.03 0.35 8.14 -51.93 -0.42 -0.07 16 48 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 49 H 0.04 0.35 8.14 -51.93 -0.42 -0.08 16 LS Contribution 388.27 15.07 5.85 5.85 Total: -1.00 -35.28 388.27 -9.53 -44.81 By element: Atomic # 1 Polarization: 8.46 SS G_CDS: -8.43 Total: 0.03 kcal Atomic # 6 Polarization: -8.29 SS G_CDS: 0.36 Total: -7.93 kcal Atomic # 7 Polarization: -62.88 SS G_CDS: 0.10 Total: -62.77 kcal Atomic # 8 Polarization: -48.87 SS G_CDS: -2.11 Total: -50.98 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -4.67 Total: 16.92 kcal Atomic # 16 Polarization: 54.71 SS G_CDS: -0.65 Total: 54.07 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -35.28 -9.53 -44.81 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885425862.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.908 kcal (2) G-P(sol) polarization free energy of solvation -35.279 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.187 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.529 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.808 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.716 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds