Wall clock time and date at job start Tue Mar 31 2020 18:37:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46507 * 109.46818 * 2 1 4 4 C 1.46496 * 120.00220 * 87.01918 * 3 2 1 5 5 C 1.53006 * 109.47268 * 296.19793 * 4 3 2 6 6 C 1.53783 * 113.61463 * 89.71204 * 5 4 3 7 7 C 1.54056 * 86.98179 * 140.02415 * 6 5 4 8 8 C 1.53769 * 113.61759 * 187.32459 * 5 4 3 9 9 S 1.65601 * 119.99919 * 267.01572 * 3 2 1 10 10 O 1.42100 * 106.40009 * 23.54163 * 9 3 2 11 11 O 1.42097 * 106.40072 * 156.46150 * 9 3 2 12 12 N 1.65597 * 107.21908 * 270.00166 * 9 3 2 13 13 C 1.46500 * 119.99971 * 89.99901 * 12 9 3 14 14 C 1.50704 * 109.47037 * 95.00113 * 13 12 9 15 15 H 1.08000 * 119.99789 * 0.02562 * 14 13 12 16 16 C 1.37873 * 119.99793 * 179.97438 * 14 13 12 17 17 N 1.31519 * 119.99737 * 179.97438 * 16 14 13 18 18 Si 1.86797 * 120.00504 * 0.02562 * 16 14 13 19 19 H 1.48504 * 109.47086 * 89.99823 * 18 16 14 20 20 H 1.48498 * 109.47425 * 210.00010 * 18 16 14 21 21 H 1.48503 * 109.46992 * 330.00352 * 18 16 14 22 22 C 1.46500 * 120.00150 * 270.00373 * 12 9 3 23 23 C 1.52990 * 109.47310 * 94.99946 * 22 12 9 24 24 O 1.42893 * 109.47540 * 65.00228 * 23 22 12 25 25 C 1.42906 * 114.00462 * 180.02562 * 24 23 22 26 26 H 1.09001 * 109.47203 * 187.84582 * 1 2 3 27 27 H 1.09003 * 109.47143 * 307.85042 * 1 2 3 28 28 H 1.08998 * 109.47339 * 67.85084 * 1 2 3 29 29 H 1.08998 * 109.47222 * 240.00365 * 2 1 3 30 30 H 1.08994 * 109.47099 * 119.99895 * 2 1 3 31 31 H 1.08999 * 109.47651 * 176.19318 * 4 3 2 32 32 H 1.09008 * 109.47075 * 56.19184 * 4 3 2 33 33 H 1.09004 * 112.84552 * 318.52670 * 5 4 3 34 34 H 1.08997 * 113.61774 * 254.61400 * 6 5 4 35 35 H 1.09002 * 113.61337 * 25.52205 * 6 5 4 36 36 H 1.08994 * 113.61715 * 220.02352 * 7 6 5 37 37 H 1.08995 * 113.61133 * 89.11514 * 7 6 5 38 38 H 1.09000 * 113.61513 * 334.48327 * 8 5 4 39 39 H 1.09005 * 113.61653 * 105.29819 * 8 5 4 40 40 H 1.09000 * 109.47434 * 215.00023 * 13 12 9 41 41 H 1.08997 * 109.47191 * 335.00063 * 13 12 9 42 42 H 0.96999 * 119.99728 * 180.02562 * 17 16 14 43 43 H 1.09000 * 109.46823 * 215.00040 * 22 12 9 44 44 H 1.08997 * 109.46788 * 334.99548 * 22 12 9 45 45 H 1.09002 * 109.47170 * 185.00387 * 23 22 12 46 46 H 1.09000 * 109.47497 * 304.99778 * 23 22 12 47 47 H 1.09000 * 109.46980 * 59.99839 * 25 24 23 48 48 H 1.08998 * 109.47182 * 179.97438 * 25 24 23 49 49 H 1.09001 * 109.46501 * 300.00124 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2002 2.0939 1.2669 5 6 0.8454 2.2584 1.9588 6 6 0.4866 1.0929 2.8956 7 6 -0.0732 2.1514 3.8649 8 6 0.8973 3.1491 3.2111 9 16 2.3646 2.1371 -1.4322 10 8 1.6058 1.4701 -2.4316 11 8 2.2660 3.5326 -1.1836 12 7 3.9564 1.8343 -1.7739 13 6 4.3254 0.6534 -2.5584 14 6 4.4597 1.0365 -4.0098 15 1 4.2878 2.0575 -4.3169 16 6 4.8030 0.0837 -4.9453 17 7 4.9197 0.4179 -6.2120 18 14 5.1011 -1.6822 -4.4141 19 1 3.8252 -2.4397 -4.4755 20 1 6.0944 -2.3111 -5.3212 21 1 5.6205 -1.6996 -3.0229 22 6 4.9957 2.7472 -1.2914 23 6 5.5589 2.2253 0.0318 24 8 6.2236 0.9802 -0.1915 25 6 6.7886 0.4032 0.9875 26 1 -0.3634 -1.0180 0.1403 27 1 -0.3633 0.6306 0.8115 28 1 -0.3634 0.3874 -0.9518 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8899 31 1 2.6307 3.0763 1.0728 32 1 2.8703 1.5245 1.9112 33 1 0.0463 2.5241 1.2667 34 1 -0.2732 0.4248 2.4902 35 1 1.3555 0.5614 3.2839 36 1 0.1507 1.9466 4.9118 37 1 -1.1233 2.3879 3.6940 38 1 1.8782 3.1788 3.6855 39 1 0.4702 4.1405 3.0599 40 1 5.2755 0.2595 -2.1973 41 1 3.5529 -0.1083 -2.4537 42 1 5.1609 -0.2526 -6.8702 43 1 5.7965 2.8081 -2.0284 44 1 4.5668 3.7375 -1.1384 45 1 6.2678 2.9483 0.4354 46 1 4.7444 2.0802 0.7414 47 1 5.9992 0.2202 1.7166 48 1 7.2741 -0.5392 0.7341 49 1 7.5228 1.0883 1.4113 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000885425862.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:37:57 Heat of formation + Delta-G solvation = -118.634463 kcal Electronic energy + Delta-G solvation = -29953.896592 eV Core-core repulsion = 26043.168344 eV Total energy + Delta-G solvation = -3910.728248 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 334.176 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.14601 -39.07460 -38.37838 -37.03178 -36.98247 -36.78733 -34.56019 -31.89631 -31.34053 -28.88366 -28.51374 -26.93874 -26.38498 -24.29625 -24.02186 -23.36382 -23.11907 -20.24499 -19.84289 -19.20528 -18.68046 -18.38981 -17.61902 -17.06395 -16.90931 -16.51052 -16.25899 -15.92730 -15.72614 -15.52137 -15.20776 -14.86531 -14.49842 -14.30177 -14.17809 -13.90547 -13.70423 -13.51392 -13.42167 -13.35977 -13.27532 -13.06996 -12.98637 -12.88402 -12.69600 -12.48233 -12.41525 -12.34087 -12.12646 -11.94378 -11.86257 -11.68807 -11.61152 -11.39616 -11.13365 -10.97236 -10.75752 -10.46486 -10.00864 -9.71068 -8.27037 -6.31107 -0.39377 1.36635 1.39915 1.50562 2.00488 2.37412 2.53645 2.99013 3.08439 3.34050 3.68334 3.78049 3.88480 3.90921 3.99322 4.07358 4.16932 4.28807 4.37637 4.40820 4.46862 4.57063 4.59928 4.62278 4.65834 4.67351 4.73349 4.85433 4.90585 4.92793 4.95743 4.98928 4.99369 5.07968 5.12058 5.13805 5.17600 5.31104 5.37139 5.44110 5.46643 5.53682 5.64138 5.71395 5.89710 6.33426 6.42960 6.70551 7.31285 8.90769 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.013707 B = 0.004727 C = 0.004302 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2042.242968 B = 5921.509176 C = 6506.298582 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.121 3.879 3 N -0.995 5.995 4 C 0.124 3.876 5 C -0.132 4.132 6 C -0.133 4.133 7 C -0.138 4.138 8 C -0.133 4.133 9 S 2.781 3.219 10 O -1.007 7.007 11 O -1.009 7.009 12 N -0.988 5.988 13 C 0.247 3.753 14 C -0.539 4.539 15 H 0.025 0.975 16 C 0.007 3.993 17 N -0.950 5.950 18 Si 0.941 3.059 19 H -0.268 1.268 20 H -0.279 1.279 21 H -0.231 1.231 22 C 0.111 3.889 23 C 0.049 3.951 24 O -0.408 6.408 25 C 0.026 3.974 26 H 0.085 0.915 27 H 0.086 0.914 28 H 0.030 0.970 29 H 0.057 0.943 30 H 0.111 0.889 31 H 0.080 0.920 32 H 0.098 0.902 33 H 0.074 0.926 34 H 0.073 0.927 35 H 0.095 0.905 36 H 0.078 0.922 37 H 0.076 0.924 38 H 0.096 0.904 39 H 0.062 0.938 40 H 0.060 0.940 41 H 0.024 0.976 42 H 0.266 0.734 43 H 0.074 0.926 44 H 0.104 0.896 45 H 0.084 0.916 46 H 0.063 0.937 47 H 0.053 0.947 48 H 0.083 0.917 49 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.431 -0.837 27.135 27.364 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C -0.004 4.004 3 N -0.837 5.837 4 C -0.001 4.001 5 C -0.153 4.153 6 C -0.170 4.170 7 C -0.175 4.175 8 C -0.171 4.171 9 S 2.792 3.208 10 O -0.991 6.991 11 O -0.992 6.992 12 N -0.827 5.827 13 C 0.122 3.878 14 C -0.578 4.578 15 H 0.044 0.956 16 C -0.190 4.190 17 N -0.591 5.591 18 Si 0.763 3.237 19 H -0.193 1.193 20 H -0.204 1.204 21 H -0.154 1.154 22 C -0.015 4.015 23 C -0.029 4.029 24 O -0.327 6.327 25 C -0.071 4.071 26 H 0.103 0.897 27 H 0.105 0.895 28 H 0.050 0.950 29 H 0.075 0.925 30 H 0.129 0.871 31 H 0.099 0.901 32 H 0.116 0.884 33 H 0.092 0.908 34 H 0.092 0.908 35 H 0.113 0.887 36 H 0.097 0.903 37 H 0.094 0.906 38 H 0.114 0.886 39 H 0.081 0.919 40 H 0.078 0.922 41 H 0.042 0.958 42 H 0.075 0.925 43 H 0.093 0.907 44 H 0.122 0.878 45 H 0.101 0.899 46 H 0.081 0.919 47 H 0.071 0.929 48 H 0.102 0.898 49 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -3.956 -0.473 26.246 26.547 hybrid contribution 0.275 -0.435 -0.712 0.879 sum -3.681 -0.908 25.534 25.814 Atomic orbital electron populations 1.22547 0.95734 1.03840 1.02201 1.21316 0.95009 0.80576 1.03530 1.57871 1.79923 1.24393 1.21474 1.21648 0.98005 0.96646 0.83790 1.22988 0.96995 0.99260 0.96033 1.23223 1.01766 0.95934 0.96120 1.22823 0.98934 0.96467 0.99320 1.22944 1.01033 0.97723 0.95447 1.01743 0.73138 0.72706 0.73244 1.93559 1.70360 1.76552 1.58645 1.93478 1.86950 1.32443 1.86368 1.57422 1.23680 1.35817 1.65760 1.19100 0.97157 0.83155 0.88415 1.21748 1.46766 0.96059 0.93242 0.95642 1.25888 0.94417 1.04159 0.94530 1.70079 1.50087 1.36249 1.02691 0.85813 0.78824 0.78619 0.80450 1.19304 1.20414 1.15394 1.21509 0.91584 0.92301 0.96062 1.23131 0.96768 0.86583 0.96448 1.88024 1.73757 1.37296 1.33628 1.22889 0.97824 0.98762 0.87577 0.89653 0.89536 0.95047 0.92495 0.87083 0.90121 0.88403 0.90753 0.90817 0.88678 0.90317 0.90581 0.88567 0.91919 0.92196 0.95837 0.92469 0.90712 0.87837 0.89852 0.91873 0.92871 0.89814 0.92840 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -4.24 9.67 71.98 0.70 -3.55 16 2 C 0.12 2.97 5.55 86.38 0.48 3.45 16 3 N -1.00 -27.60 3.01 -515.77 -1.55 -29.15 16 4 C 0.12 2.49 4.42 86.38 0.38 2.87 16 5 C -0.13 -2.33 2.68 -10.27 -0.03 -2.36 16 6 C -0.13 -1.69 6.51 31.22 0.20 -1.49 16 7 C -0.14 -1.61 8.09 31.21 0.25 -1.36 16 8 C -0.13 -1.82 7.64 31.12 0.24 -1.59 16 9 S 2.78 111.81 6.00 -56.49 -0.34 111.47 16 10 O -1.01 -50.13 16.00 -128.00 -2.05 -52.18 16 11 O -1.01 -41.95 15.30 -128.00 -1.96 -43.91 16 12 N -0.99 -40.91 2.81 -519.87 -1.46 -42.37 16 13 C 0.25 11.96 4.01 85.63 0.34 12.30 16 14 C -0.54 -32.67 9.94 25.60 0.25 -32.41 16 15 H 0.03 1.73 8.06 -2.91 -0.02 1.71 16 16 C 0.01 0.44 5.47 84.65 0.46 0.91 16 17 N -0.95 -61.98 13.96 21.45 0.30 -61.68 16 18 Si 0.94 44.68 27.47 68.60 1.88 46.57 16 19 H -0.27 -12.38 7.11 99.48 0.71 -11.68 16 20 H -0.28 -12.84 7.11 99.48 0.71 -12.13 16 21 H -0.23 -9.80 6.54 99.48 0.65 -9.15 16 22 C 0.11 3.81 6.13 86.38 0.53 4.34 16 23 C 0.05 1.22 6.28 71.98 0.45 1.68 16 24 O -0.41 -11.87 9.02 -148.98 -1.34 -13.21 16 25 C 0.03 0.49 11.01 113.37 1.25 1.74 16 26 H 0.08 1.54 8.14 -2.39 -0.02 1.52 16 27 H 0.09 1.68 3.39 -2.39 -0.01 1.67 16 28 H 0.03 0.92 8.02 -2.39 -0.02 0.90 16 29 H 0.06 1.69 7.37 -2.39 -0.02 1.67 16 30 H 0.11 1.88 8.09 -2.39 -0.02 1.86 16 31 H 0.08 1.76 6.96 -2.39 -0.02 1.74 16 32 H 0.10 1.39 7.60 -2.38 -0.02 1.37 16 33 H 0.07 1.63 7.44 -2.39 -0.02 1.61 16 34 H 0.07 0.95 6.20 -2.39 -0.01 0.93 16 35 H 0.09 0.96 7.87 -2.39 -0.02 0.95 16 36 H 0.08 0.74 8.14 -2.39 -0.02 0.72 16 37 H 0.08 0.92 8.14 -2.39 -0.02 0.90 16 38 H 0.10 1.04 8.10 -2.39 -0.02 1.02 16 39 H 0.06 0.93 8.14 -2.38 -0.02 0.91 16 40 H 0.06 2.80 5.66 -2.39 -0.01 2.79 16 41 H 0.02 1.14 6.72 -2.39 -0.02 1.12 16 42 H 0.27 16.12 8.31 -92.71 -0.77 15.35 16 43 H 0.07 2.85 8.11 -2.39 -0.02 2.83 16 44 H 0.10 3.26 6.91 -2.39 -0.02 3.24 16 45 H 0.08 1.59 8.14 -2.39 -0.02 1.57 16 46 H 0.06 1.31 6.62 -2.39 -0.02 1.30 16 47 H 0.05 0.82 8.14 -2.39 -0.02 0.80 16 48 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 49 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 Total: -1.00 -81.93 388.27 -0.14 -82.08 By element: Atomic # 1 Polarization: 16.99 SS G_CDS: 0.86 Total: 17.86 kcal Atomic # 6 Polarization: -20.98 SS G_CDS: 5.51 Total: -15.47 kcal Atomic # 7 Polarization: -130.49 SS G_CDS: -2.72 Total: -133.20 kcal Atomic # 8 Polarization: -103.95 SS G_CDS: -5.35 Total: -109.30 kcal Atomic # 14 Polarization: 44.68 SS G_CDS: 1.88 Total: 46.57 kcal Atomic # 16 Polarization: 111.81 SS G_CDS: -0.34 Total: 111.47 kcal Total: -81.93 -0.14 -82.08 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885425862.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.557 kcal (2) G-P(sol) polarization free energy of solvation -81.935 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.492 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.143 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.078 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.634 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds