Wall clock time and date at job start Tue Mar 31 2020 18:27:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09007 * 109.47027 * 2 1 4 4 O 1.42899 * 109.47169 * 240.00185 * 2 1 3 5 5 C 1.42901 * 114.00184 * 89.99633 * 4 2 1 6 6 C 1.52997 * 109.47148 * 180.02562 * 5 4 2 7 7 H 1.09010 * 109.49067 * 305.02740 * 6 5 4 8 8 C 1.53099 * 109.48039 * 185.00147 * 6 5 4 9 9 C 1.53182 * 109.16054 * 182.40773 * 8 6 5 10 10 C 1.53174 * 109.03671 * 56.98053 * 9 8 6 11 11 C 1.53093 * 109.16387 * 303.01761 * 10 9 8 12 12 O 1.42897 * 109.41509 * 57.61140 * 11 10 9 13 13 C 1.50694 * 109.47476 * 119.99775 * 2 1 3 14 14 O 1.21278 * 120.00094 * 109.07611 * 13 2 1 15 15 N 1.34774 * 120.00512 * 289.08134 * 13 2 1 16 16 C 1.37210 * 119.99634 * 4.82343 * 15 13 2 17 17 H 1.08000 * 120.00303 * 344.61610 * 16 15 13 18 18 C 1.38896 * 120.00387 * 164.61796 * 16 15 13 19 19 N 1.31408 * 119.99714 * 348.75157 * 18 16 15 20 20 Si 1.86796 * 120.00344 * 168.75171 * 18 16 15 21 21 H 1.48501 * 109.47479 * 59.99716 * 20 18 16 22 22 H 1.48497 * 109.47078 * 180.02562 * 20 18 16 23 23 H 1.48508 * 109.47062 * 300.00038 * 20 18 16 24 24 C 1.39427 * 120.00724 * 184.82241 * 15 13 2 25 25 C 1.39070 * 119.69308 * 95.48665 * 24 15 13 26 26 C 1.38383 * 119.09545 * 179.97438 * 25 24 15 27 27 C 1.38834 * 118.49199 * 0.02562 * 26 25 24 28 28 C 1.38146 * 119.31129 * 359.97438 * 27 26 25 29 29 N 1.31886 * 120.84943 * 359.74632 * 28 27 26 30 30 H 1.09000 * 109.47118 * 186.81344 * 1 2 3 31 31 H 1.08999 * 109.47475 * 306.81084 * 1 2 3 32 32 H 1.09003 * 109.47603 * 66.81437 * 1 2 3 33 33 H 1.08997 * 109.47156 * 60.00272 * 5 4 2 34 34 H 1.08996 * 109.47471 * 299.99997 * 5 4 2 35 35 H 1.08999 * 109.52277 * 62.50422 * 8 6 5 36 36 H 1.08991 * 109.57230 * 302.34308 * 8 6 5 37 37 H 1.09001 * 109.54260 * 297.11285 * 9 8 6 38 38 H 1.08999 * 109.53825 * 176.84743 * 9 8 6 39 39 H 1.09001 * 109.52252 * 62.92619 * 10 9 8 40 40 H 1.09004 * 109.51992 * 183.10905 * 10 9 8 41 41 H 1.09000 * 109.48037 * 177.59189 * 11 10 9 42 42 H 1.08998 * 109.47959 * 297.62347 * 11 10 9 43 43 H 0.96995 * 120.00461 * 180.02562 * 19 18 16 44 44 H 1.07998 * 120.45285 * 359.96302 * 25 24 15 45 45 H 1.07995 * 120.75412 * 180.02562 * 26 25 24 46 46 H 1.07993 * 120.34123 * 180.02562 * 27 26 25 47 47 H 1.07997 * 119.56942 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0063 -0.6736 -1.1668 5 6 2.2000 0.1830 -2.2941 6 6 2.7078 -0.6407 -3.4792 7 1 3.6064 -1.1838 -3.1862 8 6 3.0339 0.2932 -4.6477 9 6 3.4840 -0.5434 -5.8494 10 6 2.3827 -1.5490 -6.1988 11 6 2.0818 -2.4117 -4.9704 12 8 1.6991 -1.5699 -3.8810 13 6 2.0324 -0.7103 1.2304 14 8 2.5581 -1.7986 1.1302 15 7 1.8973 -0.1364 2.4423 16 6 1.2152 1.0475 2.5685 17 1 1.0033 1.6446 1.6939 18 6 0.7972 1.4781 3.8212 19 7 0.8541 0.6617 4.8493 20 14 0.1541 3.2176 4.0443 21 1 -1.0361 3.4201 3.1797 22 1 -0.2239 3.4272 5.4650 23 1 1.2119 4.1888 3.6656 24 6 2.4507 -0.7454 3.5679 25 6 3.7072 -0.3525 4.0161 26 6 4.2444 -0.9649 5.1348 27 6 3.5037 -1.9534 5.7686 28 6 2.2618 -2.2935 5.2683 29 7 1.7729 -1.6885 4.2032 30 1 -0.3633 -1.0204 0.1219 31 1 -0.3634 0.6157 0.8227 32 1 -0.3634 0.4046 -0.9447 33 1 2.9318 0.9514 -2.0451 34 1 1.2537 0.6547 -2.5589 35 1 3.8341 0.9739 -4.3576 36 1 2.1466 0.8669 -4.9152 37 1 4.4001 -1.0783 -5.5987 38 1 3.6642 0.1111 -6.7022 39 1 1.4816 -1.0133 -6.4973 40 1 2.7173 -2.1856 -7.0179 41 1 1.2691 -3.1007 -5.2003 42 1 2.9721 -2.9780 -4.6969 43 1 0.5619 0.9622 5.7240 44 1 4.2562 0.4199 3.4982 45 1 5.2177 -0.6803 5.5063 46 1 3.8941 -2.4506 6.6442 47 1 1.6819 -3.0616 5.7583 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000892464901.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:27:11 Heat of formation + Delta-G solvation = -74.803609 kcal Electronic energy + Delta-G solvation = -29538.042081 eV Core-core repulsion = 25493.770530 eV Total energy + Delta-G solvation = -4044.271551 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -39.77477 -39.44538 -38.26914 -36.73814 -34.80491 -33.69614 -32.35715 -31.72363 -31.33145 -30.67028 -28.87585 -26.91681 -25.14354 -24.31852 -23.76576 -22.44975 -22.18065 -21.65645 -20.37852 -19.28623 -18.18577 -16.77862 -16.51626 -16.07033 -15.77457 -15.44795 -15.34840 -14.92044 -14.76082 -14.63120 -14.43024 -14.28719 -13.95432 -13.44034 -13.36521 -12.92683 -12.78463 -12.44611 -12.35763 -12.26553 -12.20039 -11.74013 -11.54080 -11.43175 -11.39079 -11.28004 -11.15157 -11.10085 -10.88190 -10.61152 -10.52071 -10.46390 -10.26883 -9.60572 -9.44242 -9.26813 -8.80506 -8.55813 -8.37816 -7.98289 -7.79574 -6.35186 -4.06540 2.23205 2.40485 3.07354 3.14495 3.16644 3.62996 3.70364 3.77943 4.05878 4.53120 4.63905 4.68461 4.77582 4.90974 4.99790 5.06503 5.11629 5.27239 5.34575 5.44058 5.51722 5.55981 5.61563 5.63126 5.65097 5.68823 5.73710 5.76635 5.79782 5.86208 5.91884 5.95991 5.97754 6.13691 6.19926 6.31731 6.41918 6.51491 6.66963 6.88166 7.03160 7.07143 7.25072 7.28692 7.42796 7.64433 7.81732 8.33911 8.96352 9.24054 9.33933 9.75933 10.60576 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.014804 B = 0.003164 C = 0.002803 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1890.922329 B = 8846.934581 C = 9985.649384 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.093 3.907 3 H 0.076 0.924 4 O -0.353 6.353 5 C 0.068 3.932 6 C 0.094 3.906 7 H 0.067 0.933 8 C -0.149 4.149 9 C -0.121 4.121 10 C -0.157 4.157 11 C 0.059 3.941 12 O -0.366 6.366 13 C 0.482 3.518 14 O -0.570 6.570 15 N -0.410 5.410 16 C -0.349 4.349 17 H 0.108 0.892 18 C 0.041 3.959 19 N -0.851 5.851 20 Si 0.924 3.076 21 H -0.271 1.271 22 H -0.283 1.283 23 H -0.272 1.272 24 C 0.453 3.547 25 C -0.172 4.172 26 C -0.078 4.078 27 C -0.207 4.207 28 C 0.115 3.885 29 N -0.448 5.448 30 H 0.061 0.939 31 H 0.091 0.909 32 H 0.053 0.947 33 H 0.061 0.939 34 H 0.055 0.945 35 H 0.075 0.925 36 H 0.073 0.927 37 H 0.064 0.936 38 H 0.067 0.933 39 H 0.070 0.930 40 H 0.070 0.930 41 H 0.092 0.908 42 H 0.049 0.951 43 H 0.272 0.728 44 H 0.118 0.882 45 H 0.118 0.882 46 H 0.117 0.883 47 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.345 1.533 -12.502 13.324 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.032 3.968 3 H 0.094 0.906 4 O -0.271 6.271 5 C -0.010 4.010 6 C 0.036 3.964 7 H 0.085 0.915 8 C -0.187 4.187 9 C -0.158 4.158 10 C -0.195 4.195 11 C -0.018 4.018 12 O -0.284 6.284 13 C 0.270 3.730 14 O -0.452 6.452 15 N -0.130 5.130 16 C -0.475 4.475 17 H 0.126 0.874 18 C -0.166 4.166 19 N -0.486 5.486 20 Si 0.750 3.250 21 H -0.196 1.196 22 H -0.208 1.208 23 H -0.198 1.198 24 C 0.227 3.773 25 C -0.195 4.195 26 C -0.104 4.104 27 C -0.228 4.228 28 C -0.044 4.044 29 N -0.158 5.158 30 H 0.080 0.920 31 H 0.109 0.891 32 H 0.072 0.928 33 H 0.079 0.921 34 H 0.073 0.927 35 H 0.094 0.906 36 H 0.092 0.908 37 H 0.083 0.917 38 H 0.085 0.915 39 H 0.089 0.911 40 H 0.089 0.911 41 H 0.110 0.890 42 H 0.068 0.932 43 H 0.083 0.917 44 H 0.136 0.864 45 H 0.136 0.864 46 H 0.135 0.865 47 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 3.568 0.557 -12.567 13.076 hybrid contribution 0.530 1.611 0.597 1.798 sum 4.098 2.168 -11.970 12.836 Atomic orbital electron populations 1.22189 0.93922 1.03717 1.02441 1.21628 0.95104 0.95387 0.84670 0.90603 1.88065 1.86700 1.33673 1.18699 1.22506 1.00001 0.92422 0.86025 1.22064 0.91863 0.90286 0.92139 0.91525 1.22144 1.02336 0.98590 0.95580 1.21566 0.98392 0.97964 0.97916 1.22217 0.99622 0.98889 0.98758 1.22549 1.00768 0.92364 0.86116 1.88047 1.39824 1.50041 1.50534 1.19869 0.83116 0.85981 0.84069 1.90595 1.47553 1.20763 1.86250 1.41098 1.48656 1.20747 1.02547 1.19587 1.36114 0.96315 0.95503 0.87433 1.25273 0.96457 0.99363 0.95546 1.69771 1.43996 1.33971 1.00882 0.86042 0.79262 0.81938 0.77763 1.19596 1.20830 1.19764 1.17507 0.86486 0.87546 0.85721 1.21751 0.97130 1.01976 0.98609 1.21108 0.98892 0.95576 0.94832 1.21757 0.97742 1.01207 1.02060 1.22203 0.92653 0.96991 0.92601 1.67174 1.33568 1.07851 1.07241 0.92027 0.89062 0.92844 0.92110 0.92666 0.90620 0.90820 0.91707 0.91455 0.91112 0.91086 0.88986 0.93247 0.91654 0.86420 0.86416 0.86531 0.84559 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.17 9.18 37.15 0.34 -2.83 16 2 C 0.09 1.93 2.30 -27.89 -0.06 1.87 16 3 H 0.08 1.41 6.96 -51.92 -0.36 1.05 16 4 O -0.35 -7.24 9.51 -59.54 -0.57 -7.80 16 5 C 0.07 1.03 5.41 37.16 0.20 1.23 16 6 C 0.09 1.29 2.93 -26.68 -0.08 1.21 16 7 H 0.07 0.96 8.14 -51.92 -0.42 0.53 16 8 C -0.15 -1.48 5.42 -26.59 -0.14 -1.63 16 9 C -0.12 -1.04 6.03 -26.55 -0.16 -1.20 16 10 C -0.16 -1.38 6.14 -26.59 -0.16 -1.55 16 11 C 0.06 0.66 6.84 37.21 0.25 0.92 16 12 O -0.37 -5.54 10.37 -40.00 -0.41 -5.95 16 13 C 0.48 12.32 6.98 -10.99 -0.08 12.24 16 14 O -0.57 -16.47 16.51 -14.11 -0.23 -16.71 16 15 N -0.41 -10.63 2.74 -60.71 -0.17 -10.80 16 16 C -0.35 -8.62 7.97 -14.90 -0.12 -8.74 16 17 H 0.11 2.40 5.36 -52.49 -0.28 2.12 16 18 C 0.04 1.01 5.31 -17.49 -0.09 0.91 16 19 N -0.85 -22.48 10.31 55.49 0.57 -21.91 16 20 Si 0.92 19.06 29.57 -169.99 -5.03 14.03 16 21 H -0.27 -5.45 7.11 56.52 0.40 -5.05 16 22 H -0.28 -5.95 7.11 56.52 0.40 -5.55 16 23 H -0.27 -5.49 7.11 56.52 0.40 -5.09 16 24 C 0.45 11.80 3.11 -154.65 -0.48 11.31 16 25 C -0.17 -3.98 10.03 -39.22 -0.39 -4.37 16 26 C -0.08 -1.53 10.17 -39.31 -0.40 -1.93 16 27 C -0.21 -3.96 10.11 -39.39 -0.40 -4.36 16 28 C 0.12 2.51 11.18 -17.56 -0.20 2.31 16 29 N -0.45 -11.70 9.23 -12.34 -0.11 -11.82 16 30 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 31 H 0.09 1.80 5.94 -51.93 -0.31 1.49 16 32 H 0.05 0.86 7.76 -51.93 -0.40 0.46 16 33 H 0.06 0.80 8.08 -51.93 -0.42 0.38 16 34 H 0.06 0.78 7.76 -51.93 -0.40 0.37 16 35 H 0.08 0.66 8.14 -51.93 -0.42 0.23 16 36 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 37 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 38 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 39 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 40 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 41 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 42 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 43 H 0.27 6.96 8.31 -40.82 -0.34 6.62 16 44 H 0.12 2.56 8.06 -52.49 -0.42 2.14 16 45 H 0.12 1.86 8.06 -52.49 -0.42 1.44 16 46 H 0.12 1.77 8.06 -52.49 -0.42 1.34 16 47 H 0.14 2.51 8.06 -52.49 -0.42 2.09 16 LS Contribution 382.45 15.07 5.76 5.76 Total: -1.00 -33.58 382.45 -9.38 -42.96 By element: Atomic # 1 Polarization: 14.05 SS G_CDS: -7.23 Total: 6.82 kcal Atomic # 6 Polarization: 7.37 SS G_CDS: -1.97 Total: 5.40 kcal Atomic # 7 Polarization: -44.81 SS G_CDS: 0.29 Total: -44.52 kcal Atomic # 8 Polarization: -29.25 SS G_CDS: -1.21 Total: -30.46 kcal Atomic # 14 Polarization: 19.06 SS G_CDS: -5.03 Total: 14.03 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -33.58 -9.38 -42.96 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000892464901.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.840 kcal (2) G-P(sol) polarization free energy of solvation -33.579 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.419 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.384 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.963 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.804 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds