Wall clock time and date at job start Tue Mar 31 2020 18:27:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09007 * 109.47027 * 2 1 4 4 O 1.42899 * 109.47169 * 240.00185 * 2 1 3 5 5 C 1.42901 * 114.00184 * 89.99633 * 4 2 1 6 6 C 1.52997 * 109.47148 * 180.02562 * 5 4 2 7 7 H 1.09010 * 109.49067 * 305.02740 * 6 5 4 8 8 C 1.53099 * 109.48039 * 185.00147 * 6 5 4 9 9 C 1.53182 * 109.16054 * 182.40773 * 8 6 5 10 10 C 1.53174 * 109.03671 * 56.98053 * 9 8 6 11 11 C 1.53093 * 109.16387 * 303.01761 * 10 9 8 12 12 O 1.42897 * 109.41509 * 57.61140 * 11 10 9 13 13 C 1.50694 * 109.47476 * 119.99775 * 2 1 3 14 14 O 1.21278 * 120.00094 * 109.07611 * 13 2 1 15 15 N 1.34774 * 120.00512 * 289.08134 * 13 2 1 16 16 C 1.37210 * 119.99634 * 4.82343 * 15 13 2 17 17 H 1.08000 * 120.00303 * 344.61610 * 16 15 13 18 18 C 1.38896 * 120.00387 * 164.61796 * 16 15 13 19 19 N 1.31408 * 119.99714 * 348.75157 * 18 16 15 20 20 Si 1.86796 * 120.00344 * 168.75171 * 18 16 15 21 21 H 1.48501 * 109.47479 * 59.99716 * 20 18 16 22 22 H 1.48497 * 109.47078 * 180.02562 * 20 18 16 23 23 H 1.48508 * 109.47062 * 300.00038 * 20 18 16 24 24 C 1.39427 * 120.00724 * 184.82241 * 15 13 2 25 25 C 1.39070 * 119.69308 * 95.48665 * 24 15 13 26 26 C 1.38383 * 119.09545 * 179.97438 * 25 24 15 27 27 C 1.38834 * 118.49199 * 0.02562 * 26 25 24 28 28 C 1.38146 * 119.31129 * 359.97438 * 27 26 25 29 29 N 1.31886 * 120.84943 * 359.74632 * 28 27 26 30 30 H 1.09000 * 109.47118 * 186.81344 * 1 2 3 31 31 H 1.08999 * 109.47475 * 306.81084 * 1 2 3 32 32 H 1.09003 * 109.47603 * 66.81437 * 1 2 3 33 33 H 1.08997 * 109.47156 * 60.00272 * 5 4 2 34 34 H 1.08996 * 109.47471 * 299.99997 * 5 4 2 35 35 H 1.08999 * 109.52277 * 62.50422 * 8 6 5 36 36 H 1.08991 * 109.57230 * 302.34308 * 8 6 5 37 37 H 1.09001 * 109.54260 * 297.11285 * 9 8 6 38 38 H 1.08999 * 109.53825 * 176.84743 * 9 8 6 39 39 H 1.09001 * 109.52252 * 62.92619 * 10 9 8 40 40 H 1.09004 * 109.51992 * 183.10905 * 10 9 8 41 41 H 1.09000 * 109.48037 * 177.59189 * 11 10 9 42 42 H 1.08998 * 109.47959 * 297.62347 * 11 10 9 43 43 H 0.96995 * 120.00461 * 180.02562 * 19 18 16 44 44 H 1.07998 * 120.45285 * 359.96302 * 25 24 15 45 45 H 1.07995 * 120.75412 * 180.02562 * 26 25 24 46 46 H 1.07993 * 120.34123 * 180.02562 * 27 26 25 47 47 H 1.07997 * 119.56942 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0063 -0.6736 -1.1668 5 6 2.2000 0.1830 -2.2941 6 6 2.7078 -0.6407 -3.4792 7 1 3.6064 -1.1838 -3.1862 8 6 3.0339 0.2932 -4.6477 9 6 3.4840 -0.5434 -5.8494 10 6 2.3827 -1.5490 -6.1988 11 6 2.0818 -2.4117 -4.9704 12 8 1.6991 -1.5699 -3.8810 13 6 2.0324 -0.7103 1.2304 14 8 2.5581 -1.7986 1.1302 15 7 1.8973 -0.1364 2.4423 16 6 1.2152 1.0475 2.5685 17 1 1.0033 1.6446 1.6939 18 6 0.7972 1.4781 3.8212 19 7 0.8541 0.6617 4.8493 20 14 0.1541 3.2176 4.0443 21 1 -1.0361 3.4201 3.1797 22 1 -0.2239 3.4272 5.4650 23 1 1.2119 4.1888 3.6656 24 6 2.4507 -0.7454 3.5679 25 6 3.7072 -0.3525 4.0161 26 6 4.2444 -0.9649 5.1348 27 6 3.5037 -1.9534 5.7686 28 6 2.2618 -2.2935 5.2683 29 7 1.7729 -1.6885 4.2032 30 1 -0.3633 -1.0204 0.1219 31 1 -0.3634 0.6157 0.8227 32 1 -0.3634 0.4046 -0.9447 33 1 2.9318 0.9514 -2.0451 34 1 1.2537 0.6547 -2.5589 35 1 3.8341 0.9739 -4.3576 36 1 2.1466 0.8669 -4.9152 37 1 4.4001 -1.0783 -5.5987 38 1 3.6642 0.1111 -6.7022 39 1 1.4816 -1.0133 -6.4973 40 1 2.7173 -2.1856 -7.0179 41 1 1.2691 -3.1007 -5.2003 42 1 2.9721 -2.9780 -4.6969 43 1 0.5619 0.9622 5.7240 44 1 4.2562 0.4199 3.4982 45 1 5.2177 -0.6803 5.5063 46 1 3.8941 -2.4506 6.6442 47 1 1.6819 -3.0616 5.7583 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000892464901.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:27:10 Heat of formation + Delta-G solvation = -95.375219 kcal Electronic energy + Delta-G solvation = -29538.934133 eV Core-core repulsion = 25493.770530 eV Total energy + Delta-G solvation = -4045.163603 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.53009 -40.51042 -39.88844 -38.29733 -36.72717 -34.54269 -33.68809 -33.46331 -33.00477 -32.10430 -30.53372 -27.96369 -27.03610 -25.66132 -24.96181 -24.12923 -23.46551 -23.05413 -21.30590 -21.02587 -19.92897 -18.42167 -17.64296 -17.37173 -17.20275 -17.10688 -16.89282 -16.52375 -16.24080 -15.93809 -15.73592 -15.36715 -15.32116 -15.01315 -14.75870 -14.47645 -14.11717 -13.79073 -13.72677 -13.59034 -13.49586 -13.44415 -13.13130 -12.85643 -12.75114 -12.66596 -12.43076 -12.30459 -12.18189 -12.11042 -11.93309 -11.57767 -11.42952 -11.24833 -10.78972 -10.50077 -10.40034 -10.36421 -10.22017 -9.77100 -9.56490 -8.20418 -5.99481 0.53829 0.76313 1.42755 1.47126 1.56878 1.83556 2.09058 2.40083 2.81231 3.05490 3.11264 3.29348 3.81100 3.90336 3.93106 3.98334 4.04444 4.07690 4.10905 4.14671 4.18517 4.24727 4.35254 4.43690 4.48216 4.50401 4.55101 4.64769 4.69838 4.72444 4.81258 4.89244 4.92917 4.94756 5.02661 5.07132 5.12011 5.17700 5.25024 5.37182 5.38737 5.41525 5.44080 5.71269 6.05527 6.18107 6.34938 6.49561 7.05860 7.40891 7.55309 7.88063 8.73339 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.014804 B = 0.003164 C = 0.002803 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1890.922329 B = 8846.934581 C = 9985.649384 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.102 3.898 3 H 0.099 0.901 4 O -0.385 6.385 5 C 0.058 3.942 6 C 0.092 3.908 7 H 0.049 0.951 8 C -0.141 4.141 9 C -0.121 4.121 10 C -0.150 4.150 11 C 0.049 3.951 12 O -0.399 6.399 13 C 0.460 3.540 14 O -0.621 6.621 15 N -0.414 5.414 16 C -0.363 4.363 17 H 0.128 0.872 18 C -0.005 4.005 19 N -0.878 5.878 20 Si 0.994 3.006 21 H -0.259 1.259 22 H -0.291 1.291 23 H -0.261 1.261 24 C 0.415 3.585 25 C -0.197 4.197 26 C -0.072 4.072 27 C -0.193 4.193 28 C 0.094 3.906 29 N -0.496 5.496 30 H 0.034 0.966 31 H 0.085 0.915 32 H 0.087 0.913 33 H 0.081 0.919 34 H 0.068 0.932 35 H 0.091 0.909 36 H 0.079 0.921 37 H 0.064 0.936 38 H 0.089 0.911 39 H 0.072 0.928 40 H 0.091 0.909 41 H 0.099 0.901 42 H 0.045 0.955 43 H 0.267 0.733 44 H 0.119 0.881 45 H 0.163 0.837 46 H 0.166 0.834 47 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.042 3.442 -13.151 14.499 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.042 3.958 3 H 0.116 0.884 4 O -0.304 6.304 5 C -0.018 4.018 6 C 0.034 3.966 7 H 0.067 0.933 8 C -0.179 4.179 9 C -0.159 4.159 10 C -0.188 4.188 11 C -0.027 4.027 12 O -0.319 6.319 13 C 0.250 3.750 14 O -0.506 6.506 15 N -0.133 5.133 16 C -0.488 4.488 17 H 0.145 0.855 18 C -0.208 4.208 19 N -0.514 5.514 20 Si 0.817 3.183 21 H -0.184 1.184 22 H -0.217 1.217 23 H -0.185 1.185 24 C 0.191 3.809 25 C -0.220 4.220 26 C -0.098 4.098 27 C -0.213 4.213 28 C -0.065 4.065 29 N -0.207 5.207 30 H 0.054 0.946 31 H 0.104 0.896 32 H 0.106 0.894 33 H 0.099 0.901 34 H 0.087 0.913 35 H 0.109 0.891 36 H 0.098 0.902 37 H 0.083 0.917 38 H 0.108 0.892 39 H 0.090 0.910 40 H 0.110 0.890 41 H 0.117 0.883 42 H 0.063 0.937 43 H 0.077 0.923 44 H 0.137 0.863 45 H 0.180 0.820 46 H 0.183 0.817 47 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges 4.269 2.483 -13.233 14.125 hybrid contribution 0.349 0.897 0.872 1.299 sum 4.617 3.380 -12.361 13.621 Atomic orbital electron populations 1.22093 0.92921 1.02148 1.03980 1.21519 0.95618 0.95495 0.83198 0.88361 1.88040 1.86884 1.35756 1.19688 1.22878 1.01419 0.92709 0.84819 1.22148 0.90721 0.90680 0.93069 0.93300 1.22110 1.03143 0.98129 0.94479 1.21612 0.98146 0.98087 0.98013 1.22172 0.99892 0.98854 0.97886 1.22776 1.00910 0.92657 0.86391 1.87985 1.40830 1.50958 1.52112 1.20815 0.82832 0.85879 0.85455 1.90529 1.50011 1.22993 1.87100 1.41430 1.48051 1.20911 1.02953 1.20109 1.36006 0.96227 0.96490 0.85507 1.26220 0.96480 1.03090 0.95045 1.69994 1.44777 1.35634 1.00982 0.84972 0.79139 0.77058 0.77163 1.18372 1.21674 1.18523 1.17902 0.87854 0.88697 0.86483 1.21945 0.96685 1.03009 1.00312 1.21642 1.00417 0.94546 0.93182 1.22233 0.96230 1.00174 1.02629 1.22808 0.94347 0.97382 0.91946 1.67078 1.35363 1.09076 1.09215 0.94634 0.89637 0.89419 0.90060 0.91337 0.89088 0.90224 0.91733 0.89231 0.90972 0.89025 0.88326 0.93681 0.92321 0.86293 0.81985 0.81677 0.82189 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.95 9.18 71.98 0.66 -5.29 16 2 C 0.10 4.32 2.30 29.84 0.07 4.39 16 3 H 0.10 3.61 6.96 -2.38 -0.02 3.59 16 4 O -0.38 -16.14 9.51 -125.74 -1.20 -17.33 16 5 C 0.06 1.72 5.41 71.98 0.39 2.11 16 6 C 0.09 2.48 2.93 30.63 0.09 2.57 16 7 H 0.05 1.45 8.14 -2.38 -0.02 1.43 16 8 C -0.14 -2.54 5.42 30.69 0.17 -2.38 16 9 C -0.12 -1.81 6.03 30.71 0.19 -1.63 16 10 C -0.15 -2.37 6.14 30.68 0.19 -2.18 16 11 C 0.05 1.09 6.84 72.01 0.49 1.58 16 12 O -0.40 -12.20 10.37 -144.42 -1.50 -13.70 16 13 C 0.46 24.59 6.98 87.66 0.61 25.20 16 14 O -0.62 -38.02 16.51 15.78 0.26 -37.76 16 15 N -0.41 -22.24 2.74 -464.38 -1.27 -23.51 16 16 C -0.36 -18.11 7.97 84.01 0.67 -17.44 16 17 H 0.13 5.59 5.36 -2.91 -0.02 5.57 16 18 C 0.00 -0.23 5.31 84.91 0.45 0.22 16 19 N -0.88 -47.17 10.31 21.65 0.22 -46.95 16 20 Si 0.99 38.62 29.57 68.60 2.03 40.65 16 21 H -0.26 -9.53 7.11 99.48 0.71 -8.82 16 22 H -0.29 -11.58 7.11 99.48 0.71 -10.87 16 23 H -0.26 -9.58 7.11 99.48 0.71 -8.87 16 24 C 0.42 22.32 3.11 132.91 0.41 22.74 16 25 C -0.20 -9.25 10.03 22.50 0.23 -9.02 16 26 C -0.07 -2.70 10.17 22.45 0.23 -2.47 16 27 C -0.19 -6.97 10.11 22.39 0.23 -6.74 16 28 C 0.09 4.10 11.18 84.66 0.95 5.05 16 29 N -0.50 -26.77 9.23 -192.95 -1.78 -28.55 16 30 H 0.03 1.52 8.14 -2.39 -0.02 1.50 16 31 H 0.08 3.37 5.94 -2.39 -0.01 3.36 16 32 H 0.09 2.73 7.76 -2.39 -0.02 2.71 16 33 H 0.08 2.03 8.08 -2.39 -0.02 2.01 16 34 H 0.07 1.82 7.76 -2.39 -0.02 1.81 16 35 H 0.09 1.35 8.14 -2.39 -0.02 1.33 16 36 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 37 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 38 H 0.09 0.99 8.14 -2.39 -0.02 0.97 16 39 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 40 H 0.09 1.07 8.14 -2.39 -0.02 1.05 16 41 H 0.10 1.97 8.14 -2.39 -0.02 1.95 16 42 H 0.04 1.01 8.14 -2.39 -0.02 0.99 16 43 H 0.27 13.86 8.31 -92.71 -0.77 13.09 16 44 H 0.12 5.30 8.06 -2.91 -0.02 5.28 16 45 H 0.16 4.55 8.06 -2.91 -0.02 4.52 16 46 H 0.17 4.28 8.06 -2.91 -0.02 4.26 16 47 H 0.16 5.85 8.06 -2.91 -0.02 5.82 16 Total: -1.00 -78.06 382.45 3.74 -74.32 By element: Atomic # 1 Polarization: 35.14 SS G_CDS: 0.96 Total: 36.10 kcal Atomic # 6 Polarization: 10.70 SS G_CDS: 6.01 Total: 16.72 kcal Atomic # 7 Polarization: -96.17 SS G_CDS: -2.83 Total: -99.00 kcal Atomic # 8 Polarization: -66.35 SS G_CDS: -2.43 Total: -68.79 kcal Atomic # 14 Polarization: 38.62 SS G_CDS: 2.03 Total: 40.65 kcal Total: -78.06 3.74 -74.32 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000892464901.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.051 kcal (2) G-P(sol) polarization free energy of solvation -78.063 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.114 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.739 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.324 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.375 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds