Wall clock time and date at job start Tue Mar 31 2020 18:27:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08996 * 109.47255 * 2 1 4 4 O 1.42896 * 109.47028 * 120.00964 * 2 1 3 5 5 C 1.42902 * 113.99607 * 269.99349 * 4 2 1 6 6 C 1.53002 * 109.46938 * 179.97438 * 5 4 2 7 7 H 1.08995 * 109.48467 * 304.98034 * 6 5 4 8 8 C 1.53093 * 109.47975 * 184.94605 * 6 5 4 9 9 C 1.53182 * 109.16417 * 182.41142 * 8 6 5 10 10 C 1.53180 * 109.03579 * 56.97551 * 9 8 6 11 11 C 1.53086 * 109.16601 * 303.02242 * 10 9 8 12 12 O 1.42900 * 109.47907 * 65.00374 * 6 5 4 13 13 C 1.50703 * 109.46941 * 240.00366 * 2 1 3 14 14 O 1.21276 * 120.00069 * 247.84666 * 13 2 1 15 15 N 1.34777 * 119.99907 * 67.84161 * 13 2 1 16 16 C 1.37207 * 120.00080 * 4.96918 * 15 13 2 17 17 H 1.07999 * 120.00028 * 33.19722 * 16 15 13 18 18 C 1.38894 * 120.00416 * 213.20244 * 16 15 13 19 19 N 1.31406 * 120.00635 * 212.23148 * 18 16 15 20 20 Si 1.86803 * 119.99709 * 32.22161 * 18 16 15 21 21 H 1.48502 * 109.46795 * 92.24352 * 20 18 16 22 22 H 1.48498 * 109.47391 * 212.24206 * 20 18 16 23 23 H 1.48503 * 109.47081 * 332.24585 * 20 18 16 24 24 C 1.39428 * 119.99929 * 184.96290 * 15 13 2 25 25 C 1.39067 * 119.69727 * 216.13570 * 24 15 13 26 26 C 1.38378 * 119.10206 * 179.97438 * 25 24 15 27 27 C 1.38830 * 118.48936 * 359.97438 * 26 25 24 28 28 C 1.38151 * 119.31186 * 0.02562 * 27 26 25 29 29 N 1.31882 * 120.85022 * 359.74178 * 28 27 26 30 30 H 1.08996 * 109.46817 * 294.27175 * 1 2 3 31 31 H 1.08995 * 109.46832 * 54.26880 * 1 2 3 32 32 H 1.08998 * 109.46995 * 174.26943 * 1 2 3 33 33 H 1.08999 * 109.47684 * 299.99925 * 5 4 2 34 34 H 1.09000 * 109.46980 * 60.00704 * 5 4 2 35 35 H 1.09002 * 109.52284 * 302.31139 * 8 6 5 36 36 H 1.08993 * 109.52215 * 62.50449 * 8 6 5 37 37 H 1.08997 * 109.54260 * 297.11108 * 9 8 6 38 38 H 1.08994 * 109.54631 * 176.84689 * 9 8 6 39 39 H 1.09001 * 109.52141 * 183.11132 * 10 9 8 40 40 H 1.09006 * 109.56893 * 62.95888 * 10 9 8 41 41 H 1.09001 * 109.48172 * 297.62419 * 11 10 9 42 42 H 1.09002 * 109.48094 * 177.58847 * 11 10 9 43 43 H 0.96999 * 120.00479 * 179.97438 * 19 18 16 44 44 H 1.08005 * 120.45056 * 359.97438 * 25 24 15 45 45 H 1.07997 * 120.75652 * 180.02562 * 26 25 24 46 46 H 1.08003 * 120.34399 * 180.02562 * 27 26 25 47 47 H 1.08000 * 119.57183 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 8 2.0063 -0.6738 1.1666 5 6 2.2002 0.1827 2.2940 6 6 2.7079 -0.6412 3.4790 7 1 2.0191 -1.4636 3.6719 8 6 2.7982 0.2510 4.7198 9 6 3.3639 -0.5653 5.8861 10 6 4.7259 -1.1375 5.4811 11 6 4.5611 -1.9761 4.2110 12 8 4.0023 -1.1651 3.1754 13 6 2.0323 -0.7103 -1.2305 14 8 2.6078 -1.7726 -1.1250 15 7 1.8419 -0.1651 -2.4483 16 6 1.2826 1.0827 -2.5615 17 1 1.4722 1.8300 -1.8052 18 6 0.4726 1.3848 -3.6485 19 7 0.4467 2.6076 -4.1291 20 14 -0.5800 0.0526 -4.4276 21 1 -1.9261 0.0555 -3.8006 22 1 -0.7116 0.3139 -5.8835 23 1 0.0609 -1.2705 -4.2181 24 6 2.2132 -0.8690 -3.5931 25 6 2.7360 -0.1834 -4.6842 26 6 3.1010 -0.8943 -5.8139 27 6 2.9305 -2.2721 -5.8131 28 6 2.4050 -2.8879 -4.6936 29 7 2.0702 -2.1847 -3.6293 30 1 -0.3633 0.4224 0.9368 31 1 -0.3633 0.6001 -0.8342 32 1 -0.3633 -1.0225 -0.1026 33 1 2.9321 0.9510 2.0451 34 1 1.2539 0.6544 2.5589 35 1 3.4555 1.0958 4.5140 36 1 1.8045 0.6161 4.9790 37 1 2.6819 -1.3813 6.1246 38 1 3.4834 0.0783 6.7576 39 1 5.1107 -1.7653 6.2848 40 1 5.4229 -0.3213 5.2909 41 1 3.8965 -2.8160 4.4135 42 1 5.5344 -2.3507 3.8939 43 1 -0.1188 2.8184 -4.8885 44 1 2.8554 0.8895 -4.6504 45 1 3.5101 -0.3890 -6.6763 46 1 3.2057 -2.8565 -6.6787 47 1 2.2709 -3.9595 -4.6883 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000892464906.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:27:14 Heat of formation + Delta-G solvation = -70.445618 kcal Electronic energy + Delta-G solvation = -29709.089010 eV Core-core repulsion = 25665.006436 eV Total energy + Delta-G solvation = -4044.082574 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -40.14047 -39.49038 -38.45937 -36.86330 -35.04272 -33.68847 -32.38953 -32.33631 -31.52097 -30.73688 -29.06915 -26.93866 -25.34941 -24.32023 -23.92529 -22.62905 -22.20003 -21.77415 -20.37444 -19.21095 -18.35622 -16.81574 -16.52524 -16.03943 -15.87077 -15.81851 -15.57429 -14.98447 -14.87308 -14.65981 -14.48292 -14.22459 -13.90356 -13.58040 -13.45992 -13.19990 -12.90326 -12.75683 -12.56706 -12.38523 -12.21949 -12.10811 -11.85980 -11.54915 -11.37063 -11.32820 -11.21122 -10.99572 -10.92861 -10.82813 -10.55384 -10.28447 -10.11240 -9.71397 -9.44464 -9.31643 -9.00664 -8.84898 -8.74721 -8.28830 -7.51191 -6.78073 -4.25908 1.86513 2.08862 3.07038 3.19274 3.35586 3.50309 3.64516 3.79296 4.07273 4.30030 4.51097 4.63803 4.68542 4.76012 4.91914 4.97469 5.10402 5.18404 5.31972 5.35360 5.42858 5.47739 5.50929 5.59870 5.61298 5.64840 5.70969 5.74156 5.76482 5.79155 5.82678 5.89414 5.96782 6.00073 6.08963 6.13369 6.32841 6.35738 6.55487 6.74346 6.82185 6.91907 7.09259 7.30054 7.45688 7.59902 7.79960 8.09571 8.60816 8.84783 9.15843 9.52971 10.29457 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.017178 B = 0.003265 C = 0.002930 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1629.568459 B = 8573.072398 C = 9554.271700 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.091 3.909 3 H 0.083 0.917 4 O -0.356 6.356 5 C 0.068 3.932 6 C 0.095 3.905 7 H 0.065 0.935 8 C -0.149 4.149 9 C -0.120 4.120 10 C -0.158 4.158 11 C 0.059 3.941 12 O -0.364 6.364 13 C 0.495 3.505 14 O -0.519 6.519 15 N -0.404 5.404 16 C -0.371 4.371 17 H 0.115 0.885 18 C 0.094 3.906 19 N -0.826 5.826 20 Si 0.829 3.171 21 H -0.272 1.272 22 H -0.279 1.279 23 H -0.233 1.233 24 C 0.377 3.623 25 C -0.186 4.186 26 C -0.068 4.068 27 C -0.230 4.230 28 C 0.119 3.881 29 N -0.492 5.492 30 H 0.054 0.946 31 H 0.094 0.906 32 H 0.057 0.943 33 H 0.056 0.944 34 H 0.062 0.938 35 H 0.074 0.926 36 H 0.075 0.925 37 H 0.064 0.936 38 H 0.067 0.933 39 H 0.070 0.930 40 H 0.071 0.929 41 H 0.048 0.952 42 H 0.092 0.908 43 H 0.280 0.720 44 H 0.145 0.855 45 H 0.125 0.875 46 H 0.122 0.878 47 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.988 -2.550 11.256 11.922 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.030 3.970 3 H 0.101 0.899 4 O -0.274 6.274 5 C -0.009 4.009 6 C 0.037 3.963 7 H 0.083 0.917 8 C -0.187 4.187 9 C -0.158 4.158 10 C -0.195 4.195 11 C -0.018 4.018 12 O -0.282 6.282 13 C 0.284 3.716 14 O -0.394 6.394 15 N -0.121 5.121 16 C -0.496 4.496 17 H 0.132 0.868 18 C -0.119 4.119 19 N -0.457 5.457 20 Si 0.652 3.348 21 H -0.198 1.198 22 H -0.205 1.205 23 H -0.156 1.156 24 C 0.149 3.851 25 C -0.209 4.209 26 C -0.094 4.094 27 C -0.252 4.252 28 C -0.041 4.041 29 N -0.207 5.207 30 H 0.073 0.927 31 H 0.112 0.888 32 H 0.077 0.923 33 H 0.074 0.926 34 H 0.080 0.920 35 H 0.092 0.908 36 H 0.094 0.906 37 H 0.082 0.918 38 H 0.086 0.914 39 H 0.089 0.911 40 H 0.089 0.911 41 H 0.067 0.933 42 H 0.110 0.890 43 H 0.090 0.910 44 H 0.163 0.837 45 H 0.143 0.857 46 H 0.140 0.860 47 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 2.999 -3.463 11.865 12.719 hybrid contribution -0.631 0.321 -1.047 1.264 sum 2.367 -3.142 10.818 11.511 Atomic orbital electron populations 1.22146 0.93760 1.03221 1.03004 1.21661 0.95018 0.95898 0.84400 0.89918 1.88041 1.86719 1.33714 1.18927 1.22518 0.99061 0.92873 0.86473 1.22053 0.85670 0.95754 0.92854 0.91681 1.22150 1.02242 0.99228 0.95074 1.21561 0.96731 0.99739 0.97749 1.22222 0.97896 1.00865 0.98553 1.22551 0.99017 0.92574 0.87632 1.88093 1.32036 1.67516 1.40597 1.20454 0.81457 0.85168 0.84518 1.90643 1.41043 1.21553 1.86147 1.41464 1.52985 1.16085 1.01523 1.18952 1.30730 0.86872 1.13068 0.86802 1.25154 0.95743 0.95946 0.95038 1.69901 1.34001 1.20603 1.21169 0.87506 0.82540 0.85814 0.78968 1.19760 1.20478 1.15594 1.18489 0.90870 0.87647 0.88088 1.21809 1.02363 1.02501 0.94227 1.21284 0.96844 0.93922 0.97309 1.21776 1.07637 0.95460 1.00347 1.22331 0.94380 0.99252 0.88118 1.67374 1.18307 1.07132 1.27881 0.92686 0.88756 0.92349 0.92594 0.91963 0.90751 0.90621 0.91763 0.91438 0.91086 0.91063 0.93320 0.88965 0.90990 0.83707 0.85667 0.86034 0.83833 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.01 9.33 37.16 0.35 -2.66 16 2 C 0.09 1.86 2.40 -27.88 -0.07 1.79 16 3 H 0.08 1.59 6.75 -51.93 -0.35 1.24 16 4 O -0.36 -7.15 9.50 -59.64 -0.57 -7.72 16 5 C 0.07 1.03 5.41 37.16 0.20 1.23 16 6 C 0.09 1.29 2.93 -26.68 -0.08 1.21 16 7 H 0.07 0.89 8.14 -51.93 -0.42 0.46 16 8 C -0.15 -1.49 5.42 -26.59 -0.14 -1.63 16 9 C -0.12 -1.04 6.03 -26.54 -0.16 -1.20 16 10 C -0.16 -1.43 6.14 -26.59 -0.16 -1.60 16 11 C 0.06 0.69 6.84 37.20 0.25 0.95 16 12 O -0.36 -5.75 10.37 -40.06 -0.42 -6.17 16 13 C 0.50 12.28 6.89 -10.98 -0.08 12.21 16 14 O -0.52 -14.44 15.51 -14.23 -0.22 -14.66 16 15 N -0.40 -10.03 2.48 -60.71 -0.15 -10.18 16 16 C -0.37 -9.09 6.72 -14.90 -0.10 -9.19 16 17 H 0.11 2.79 6.88 -52.49 -0.36 2.43 16 18 C 0.09 2.32 4.12 -17.49 -0.07 2.25 16 19 N -0.83 -20.89 13.96 55.49 0.77 -20.12 16 20 Si 0.83 19.62 26.52 -169.99 -4.51 15.11 16 21 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 22 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 23 H -0.23 -5.79 4.82 56.52 0.27 -5.52 16 24 C 0.38 9.25 3.71 -154.64 -0.57 8.67 16 25 C -0.19 -4.12 7.63 -39.22 -0.30 -4.42 16 26 C -0.07 -1.26 10.17 -39.31 -0.40 -1.66 16 27 C -0.23 -4.06 10.11 -39.39 -0.40 -4.46 16 28 C 0.12 2.37 11.18 -17.56 -0.20 2.17 16 29 N -0.49 -11.97 7.84 -12.34 -0.10 -12.07 16 30 H 0.05 0.82 7.77 -51.93 -0.40 0.42 16 31 H 0.09 1.85 6.48 -51.93 -0.34 1.51 16 32 H 0.06 1.12 8.14 -51.93 -0.42 0.69 16 33 H 0.06 0.84 8.09 -51.93 -0.42 0.42 16 34 H 0.06 0.78 7.77 -51.93 -0.40 0.37 16 35 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 36 H 0.08 0.64 8.14 -51.93 -0.42 0.21 16 37 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 38 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 39 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 40 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 41 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 42 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 43 H 0.28 6.68 8.31 -40.82 -0.34 6.34 16 44 H 0.15 3.31 7.19 -52.48 -0.38 2.93 16 45 H 0.13 1.90 8.06 -52.49 -0.42 1.47 16 46 H 0.12 1.68 8.06 -52.48 -0.42 1.25 16 47 H 0.14 2.37 8.06 -52.49 -0.42 1.95 16 LS Contribution 375.03 15.07 5.65 5.65 Total: -1.00 -32.12 375.03 -8.87 -40.99 By element: Atomic # 1 Polarization: 12.91 SS G_CDS: -7.41 Total: 5.50 kcal Atomic # 6 Polarization: 5.58 SS G_CDS: -1.93 Total: 3.65 kcal Atomic # 7 Polarization: -42.89 SS G_CDS: 0.53 Total: -42.36 kcal Atomic # 8 Polarization: -27.34 SS G_CDS: -1.20 Total: -28.54 kcal Atomic # 14 Polarization: 19.62 SS G_CDS: -4.51 Total: 15.11 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -32.12 -8.87 -40.99 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000892464906.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.459 kcal (2) G-P(sol) polarization free energy of solvation -32.117 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.576 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.869 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.986 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.446 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds