Wall clock time and date at job start Tue Mar 31 2020 18:27:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08996 * 109.47255 * 2 1 4 4 O 1.42896 * 109.47028 * 120.00964 * 2 1 3 5 5 C 1.42902 * 113.99607 * 269.99349 * 4 2 1 6 6 C 1.53002 * 109.46938 * 179.97438 * 5 4 2 7 7 H 1.08995 * 109.48467 * 304.98034 * 6 5 4 8 8 C 1.53093 * 109.47975 * 184.94605 * 6 5 4 9 9 C 1.53182 * 109.16417 * 182.41142 * 8 6 5 10 10 C 1.53180 * 109.03579 * 56.97551 * 9 8 6 11 11 C 1.53086 * 109.16601 * 303.02242 * 10 9 8 12 12 O 1.42900 * 109.47907 * 65.00374 * 6 5 4 13 13 C 1.50703 * 109.46941 * 240.00366 * 2 1 3 14 14 O 1.21276 * 120.00069 * 247.84666 * 13 2 1 15 15 N 1.34777 * 119.99907 * 67.84161 * 13 2 1 16 16 C 1.37207 * 120.00080 * 4.96918 * 15 13 2 17 17 H 1.07999 * 120.00028 * 33.19722 * 16 15 13 18 18 C 1.38894 * 120.00416 * 213.20244 * 16 15 13 19 19 N 1.31406 * 120.00635 * 212.23148 * 18 16 15 20 20 Si 1.86803 * 119.99709 * 32.22161 * 18 16 15 21 21 H 1.48502 * 109.46795 * 92.24352 * 20 18 16 22 22 H 1.48498 * 109.47391 * 212.24206 * 20 18 16 23 23 H 1.48503 * 109.47081 * 332.24585 * 20 18 16 24 24 C 1.39428 * 119.99929 * 184.96290 * 15 13 2 25 25 C 1.39067 * 119.69727 * 216.13570 * 24 15 13 26 26 C 1.38378 * 119.10206 * 179.97438 * 25 24 15 27 27 C 1.38830 * 118.48936 * 359.97438 * 26 25 24 28 28 C 1.38151 * 119.31186 * 0.02562 * 27 26 25 29 29 N 1.31882 * 120.85022 * 359.74178 * 28 27 26 30 30 H 1.08996 * 109.46817 * 294.27175 * 1 2 3 31 31 H 1.08995 * 109.46832 * 54.26880 * 1 2 3 32 32 H 1.08998 * 109.46995 * 174.26943 * 1 2 3 33 33 H 1.08999 * 109.47684 * 299.99925 * 5 4 2 34 34 H 1.09000 * 109.46980 * 60.00704 * 5 4 2 35 35 H 1.09002 * 109.52284 * 302.31139 * 8 6 5 36 36 H 1.08993 * 109.52215 * 62.50449 * 8 6 5 37 37 H 1.08997 * 109.54260 * 297.11108 * 9 8 6 38 38 H 1.08994 * 109.54631 * 176.84689 * 9 8 6 39 39 H 1.09001 * 109.52141 * 183.11132 * 10 9 8 40 40 H 1.09006 * 109.56893 * 62.95888 * 10 9 8 41 41 H 1.09001 * 109.48172 * 297.62419 * 11 10 9 42 42 H 1.09002 * 109.48094 * 177.58847 * 11 10 9 43 43 H 0.96999 * 120.00479 * 179.97438 * 19 18 16 44 44 H 1.08005 * 120.45056 * 359.97438 * 25 24 15 45 45 H 1.07997 * 120.75652 * 180.02562 * 26 25 24 46 46 H 1.08003 * 120.34399 * 180.02562 * 27 26 25 47 47 H 1.08000 * 119.57183 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 8 2.0063 -0.6738 1.1666 5 6 2.2002 0.1827 2.2940 6 6 2.7079 -0.6412 3.4790 7 1 2.0191 -1.4636 3.6719 8 6 2.7982 0.2510 4.7198 9 6 3.3639 -0.5653 5.8861 10 6 4.7259 -1.1375 5.4811 11 6 4.5611 -1.9761 4.2110 12 8 4.0023 -1.1651 3.1754 13 6 2.0323 -0.7103 -1.2305 14 8 2.6078 -1.7726 -1.1250 15 7 1.8419 -0.1651 -2.4483 16 6 1.2826 1.0827 -2.5615 17 1 1.4722 1.8300 -1.8052 18 6 0.4726 1.3848 -3.6485 19 7 0.4467 2.6076 -4.1291 20 14 -0.5800 0.0526 -4.4276 21 1 -1.9261 0.0555 -3.8006 22 1 -0.7116 0.3139 -5.8835 23 1 0.0609 -1.2705 -4.2181 24 6 2.2132 -0.8690 -3.5931 25 6 2.7360 -0.1834 -4.6842 26 6 3.1010 -0.8943 -5.8139 27 6 2.9305 -2.2721 -5.8131 28 6 2.4050 -2.8879 -4.6936 29 7 2.0702 -2.1847 -3.6293 30 1 -0.3633 0.4224 0.9368 31 1 -0.3633 0.6001 -0.8342 32 1 -0.3633 -1.0225 -0.1026 33 1 2.9321 0.9510 2.0451 34 1 1.2539 0.6544 2.5589 35 1 3.4555 1.0958 4.5140 36 1 1.8045 0.6161 4.9790 37 1 2.6819 -1.3813 6.1246 38 1 3.4834 0.0783 6.7576 39 1 5.1107 -1.7653 6.2848 40 1 5.4229 -0.3213 5.2909 41 1 3.8965 -2.8160 4.4135 42 1 5.5344 -2.3507 3.8939 43 1 -0.1188 2.8184 -4.8885 44 1 2.8554 0.8895 -4.6504 45 1 3.5101 -0.3890 -6.6763 46 1 3.2057 -2.8565 -6.6787 47 1 2.2709 -3.9595 -4.6883 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000892464906.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:27:13 Heat of formation + Delta-G solvation = -89.978219 kcal Electronic energy + Delta-G solvation = -29709.936007 eV Core-core repulsion = 25665.006436 eV Total energy + Delta-G solvation = -4044.929571 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.86641 -40.56206 -40.02429 -38.37511 -36.92257 -34.55456 -34.22568 -33.54723 -33.14650 -32.12942 -30.65487 -27.98668 -27.22415 -25.72743 -25.01783 -24.21750 -23.54121 -23.07425 -21.27833 -20.93667 -20.08400 -18.43728 -17.67773 -17.65683 -17.35275 -17.22181 -16.94706 -16.55319 -16.26045 -16.10330 -15.57963 -15.42468 -15.36221 -15.13260 -14.95270 -14.79994 -14.53203 -14.14213 -13.86819 -13.64734 -13.57002 -13.43007 -13.17961 -13.04195 -12.95358 -12.80966 -12.62834 -12.27296 -12.13660 -11.97902 -11.96019 -11.58708 -11.53351 -11.23285 -10.90070 -10.65855 -10.59806 -10.51559 -10.38293 -10.01291 -9.25294 -8.70402 -6.18015 0.24072 0.50500 1.17091 1.27449 1.45427 1.77719 1.98598 2.20144 2.65161 2.81551 2.94283 3.18222 3.62860 3.83764 3.92179 3.96499 3.97440 4.06153 4.08859 4.10534 4.14776 4.22859 4.32349 4.33725 4.40445 4.41814 4.48674 4.54329 4.64586 4.69966 4.80837 4.86148 4.89203 4.93684 4.96962 5.06666 5.11064 5.14737 5.17161 5.30329 5.33177 5.38201 5.41589 5.82908 5.89847 6.13886 6.27955 6.36866 6.77641 7.07683 7.33504 7.71561 8.40756 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.017178 B = 0.003265 C = 0.002930 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1629.568459 B = 8573.072398 C = 9554.271700 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.098 3.902 3 H 0.091 0.909 4 O -0.383 6.383 5 C 0.058 3.942 6 C 0.091 3.909 7 H 0.060 0.940 8 C -0.142 4.142 9 C -0.119 4.119 10 C -0.152 4.152 11 C 0.050 3.950 12 O -0.405 6.405 13 C 0.479 3.521 14 O -0.565 6.565 15 N -0.412 5.412 16 C -0.367 4.367 17 H 0.107 0.893 18 C 0.081 3.919 19 N -0.849 5.849 20 Si 0.865 3.135 21 H -0.274 1.274 22 H -0.276 1.276 23 H -0.249 1.249 24 C 0.344 3.656 25 C -0.202 4.202 26 C -0.063 4.063 27 C -0.204 4.204 28 C 0.100 3.900 29 N -0.530 5.530 30 H 0.093 0.907 31 H 0.080 0.920 32 H 0.044 0.956 33 H 0.052 0.948 34 H 0.093 0.907 35 H 0.072 0.928 36 H 0.096 0.904 37 H 0.069 0.931 38 H 0.089 0.911 39 H 0.093 0.907 40 H 0.067 0.933 41 H 0.050 0.950 42 H 0.093 0.907 43 H 0.285 0.715 44 H 0.130 0.870 45 H 0.167 0.833 46 H 0.174 0.826 47 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.963 -2.789 11.206 11.922 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.038 3.962 3 H 0.108 0.892 4 O -0.302 6.302 5 C -0.018 4.018 6 C 0.034 3.966 7 H 0.078 0.922 8 C -0.180 4.180 9 C -0.157 4.157 10 C -0.189 4.189 11 C -0.027 4.027 12 O -0.325 6.325 13 C 0.270 3.730 14 O -0.443 6.443 15 N -0.128 5.128 16 C -0.492 4.492 17 H 0.125 0.875 18 C -0.130 4.130 19 N -0.481 5.481 20 Si 0.689 3.311 21 H -0.200 1.200 22 H -0.201 1.201 23 H -0.173 1.173 24 C 0.117 3.883 25 C -0.225 4.225 26 C -0.089 4.089 27 C -0.225 4.225 28 C -0.059 4.059 29 N -0.245 5.245 30 H 0.111 0.889 31 H 0.099 0.901 32 H 0.063 0.937 33 H 0.070 0.930 34 H 0.111 0.889 35 H 0.091 0.909 36 H 0.114 0.886 37 H 0.088 0.912 38 H 0.107 0.893 39 H 0.111 0.889 40 H 0.085 0.915 41 H 0.069 0.931 42 H 0.111 0.889 43 H 0.095 0.905 44 H 0.148 0.852 45 H 0.184 0.816 46 H 0.191 0.809 47 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges 2.966 -3.691 11.796 12.711 hybrid contribution -0.509 0.269 -1.138 1.275 sum 2.457 -3.422 10.658 11.460 Atomic orbital electron populations 1.22054 0.92197 1.02358 1.04432 1.21571 0.95993 0.95382 0.83270 0.89151 1.88014 1.86927 1.35467 1.19805 1.22889 1.00625 0.92783 0.85478 1.22191 0.84760 0.96125 0.93556 0.92212 1.22124 1.03586 0.98536 0.93729 1.21602 0.96235 1.00099 0.97736 1.22180 0.98448 1.00650 0.97648 1.22766 0.98882 0.92822 0.88194 1.88029 1.33104 1.68402 1.42951 1.21256 0.80950 0.85061 0.85747 1.90583 1.43345 1.23568 1.86850 1.41583 1.53114 1.16092 1.02048 1.18871 1.30833 0.86656 1.12851 0.87543 1.25310 0.95970 0.96451 0.95240 1.69905 1.34950 1.21233 1.22020 0.86979 0.81437 0.84089 0.78620 1.19951 1.20099 1.17262 1.18762 0.92750 0.88208 0.88580 1.21845 1.03463 1.02022 0.95214 1.21816 0.95317 0.94591 0.97160 1.22315 1.04117 0.95294 1.00765 1.23042 0.94138 1.00716 0.87993 1.67321 1.19602 1.07457 1.30148 0.88862 0.90137 0.93693 0.92968 0.88922 0.90927 0.88563 0.91204 0.89292 0.88892 0.91455 0.93140 0.88881 0.90462 0.85180 0.81588 0.80906 0.80859 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.66 9.33 71.98 0.67 -4.99 16 2 C 0.10 4.14 2.40 29.85 0.07 4.21 16 3 H 0.09 3.57 6.75 -2.39 -0.02 3.56 16 4 O -0.38 -15.83 9.50 -125.64 -1.19 -17.02 16 5 C 0.06 1.76 5.41 71.98 0.39 2.15 16 6 C 0.09 2.46 2.93 30.63 0.09 2.55 16 7 H 0.06 1.63 8.14 -2.39 -0.02 1.61 16 8 C -0.14 -2.59 5.42 30.69 0.17 -2.42 16 9 C -0.12 -1.78 6.03 30.72 0.19 -1.59 16 10 C -0.15 -2.53 6.14 30.68 0.19 -2.34 16 11 C 0.05 1.16 6.84 72.01 0.49 1.65 16 12 O -0.40 -13.16 10.37 -144.36 -1.50 -14.66 16 13 C 0.48 24.81 6.89 87.66 0.60 25.41 16 14 O -0.56 -33.01 15.51 15.91 0.25 -32.76 16 15 N -0.41 -21.10 2.48 -464.37 -1.15 -22.25 16 16 C -0.37 -18.44 6.72 84.01 0.56 -17.88 16 17 H 0.11 5.39 6.88 -2.91 -0.02 5.37 16 18 C 0.08 4.05 4.12 84.91 0.35 4.40 16 19 N -0.85 -43.08 13.96 21.65 0.30 -42.78 16 20 Si 0.87 40.64 26.52 68.60 1.82 42.46 16 21 H -0.27 -12.75 7.11 99.48 0.71 -12.04 16 22 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 23 H -0.25 -12.42 4.82 99.48 0.48 -11.94 16 24 C 0.34 17.13 3.71 132.91 0.49 17.62 16 25 C -0.20 -8.93 7.63 22.50 0.17 -8.76 16 26 C -0.06 -2.17 10.17 22.44 0.23 -1.94 16 27 C -0.20 -6.42 10.11 22.39 0.23 -6.19 16 28 C 0.10 3.80 11.18 84.66 0.95 4.75 16 29 N -0.53 -25.99 7.84 -192.95 -1.51 -27.50 16 30 H 0.09 2.67 7.77 -2.39 -0.02 2.65 16 31 H 0.08 3.20 6.48 -2.39 -0.02 3.18 16 32 H 0.04 1.75 8.14 -2.39 -0.02 1.73 16 33 H 0.05 1.58 8.09 -2.39 -0.02 1.56 16 34 H 0.09 2.16 7.77 -2.39 -0.02 2.15 16 35 H 0.07 1.35 8.14 -2.39 -0.02 1.34 16 36 H 0.10 1.35 8.14 -2.39 -0.02 1.33 16 37 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 38 H 0.09 0.99 8.14 -2.39 -0.02 0.97 16 39 H 0.09 1.14 8.14 -2.39 -0.02 1.12 16 40 H 0.07 1.18 8.14 -2.38 -0.02 1.16 16 41 H 0.05 1.12 8.14 -2.39 -0.02 1.10 16 42 H 0.09 2.05 8.14 -2.39 -0.02 2.03 16 43 H 0.28 13.56 8.31 -92.71 -0.77 12.79 16 44 H 0.13 6.04 7.19 -2.91 -0.02 6.02 16 45 H 0.17 4.29 8.06 -2.91 -0.02 4.27 16 46 H 0.17 3.68 8.06 -2.91 -0.02 3.66 16 47 H 0.17 5.31 8.06 -2.91 -0.02 5.29 16 Total: -1.00 -73.49 375.03 3.58 -69.91 By element: Atomic # 1 Polarization: 27.24 SS G_CDS: 0.73 Total: 27.97 kcal Atomic # 6 Polarization: 10.80 SS G_CDS: 5.84 Total: 16.64 kcal Atomic # 7 Polarization: -90.18 SS G_CDS: -2.36 Total: -92.54 kcal Atomic # 8 Polarization: -61.99 SS G_CDS: -2.44 Total: -64.44 kcal Atomic # 14 Polarization: 40.64 SS G_CDS: 1.82 Total: 42.46 kcal Total: -73.49 3.58 -69.91 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000892464906.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.073 kcal (2) G-P(sol) polarization free energy of solvation -73.488 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.561 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.583 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.906 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.978 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds