Wall clock time and date at job start Tue Mar 31 2020 18:27:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08994 * 109.47181 * 2 1 4 4 O 1.42903 * 109.46914 * 240.00163 * 2 1 3 5 5 C 1.42894 * 113.99857 * 90.00635 * 4 2 1 6 6 C 1.53008 * 109.47409 * 179.97438 * 5 4 2 7 7 H 1.09000 * 109.47525 * 54.96855 * 6 5 4 8 8 C 1.53080 * 109.48349 * 174.99599 * 6 5 4 9 9 C 1.53178 * 109.16515 * 177.59175 * 8 6 5 10 10 C 1.53185 * 109.03512 * 303.01874 * 9 8 6 11 11 C 1.53092 * 109.15859 * 56.97933 * 10 9 8 12 12 O 1.42898 * 109.41850 * 302.38919 * 11 10 9 13 13 C 1.50701 * 109.46900 * 120.00524 * 2 1 3 14 14 O 1.21272 * 120.00359 * 107.27753 * 13 2 1 15 15 N 1.34770 * 120.00140 * 287.27797 * 13 2 1 16 16 C 1.37217 * 119.99863 * 5.36569 * 15 13 2 17 17 H 1.08003 * 119.99930 * 306.82548 * 16 15 13 18 18 C 1.38898 * 120.00105 * 126.82591 * 16 15 13 19 19 N 1.31406 * 119.99878 * 156.35228 * 18 16 15 20 20 Si 1.86794 * 119.99650 * 336.35361 * 18 16 15 21 21 H 1.48505 * 109.47174 * 94.09918 * 20 18 16 22 22 H 1.48504 * 109.46952 * 214.09618 * 20 18 16 23 23 H 1.48494 * 109.47633 * 334.10124 * 20 18 16 24 24 C 1.39427 * 120.00273 * 185.36963 * 15 13 2 25 25 C 1.39057 * 119.69566 * 14.90288 * 24 15 13 26 26 C 1.38386 * 119.09644 * 179.73351 * 25 24 15 27 27 C 1.38830 * 118.49196 * 0.53071 * 26 25 24 28 28 C 1.38148 * 119.31119 * 359.73052 * 27 26 25 29 29 N 1.31885 * 120.85063 * 0.02562 * 28 27 26 30 30 H 1.08995 * 109.47349 * 296.88967 * 1 2 3 31 31 H 1.09004 * 109.47456 * 176.88994 * 1 2 3 32 32 H 1.09002 * 109.47087 * 56.89509 * 1 2 3 33 33 H 1.09000 * 109.46874 * 299.99386 * 5 4 2 34 34 H 1.08994 * 109.47671 * 59.99460 * 5 4 2 35 35 H 1.09006 * 109.52580 * 297.49869 * 8 6 5 36 36 H 1.09005 * 109.52314 * 57.62080 * 8 6 5 37 37 H 1.08993 * 109.54290 * 62.88633 * 9 8 6 38 38 H 1.09001 * 109.54684 * 183.06217 * 9 8 6 39 39 H 1.08993 * 109.51980 * 176.88148 * 10 9 8 40 40 H 1.08994 * 109.51915 * 297.01091 * 10 9 8 41 41 H 1.08996 * 109.48289 * 62.37687 * 11 10 9 42 42 H 1.09002 * 109.47781 * 182.41120 * 11 10 9 43 43 H 0.96998 * 119.99894 * 179.97438 * 19 18 16 44 44 H 1.07994 * 120.45652 * 359.97438 * 25 24 15 45 45 H 1.08003 * 120.75387 * 180.25903 * 26 25 24 46 46 H 1.07997 * 120.34343 * 179.70980 * 27 26 25 47 47 H 1.07998 * 119.57242 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 8 2.0063 -0.6736 -1.1668 5 6 2.2001 0.1830 -2.2940 6 6 2.7091 -0.6404 -3.4789 7 1 2.0213 -1.4638 -3.6715 8 6 2.7980 0.2515 -4.7199 9 6 3.3648 -0.5643 -5.8859 10 6 4.7278 -1.1344 -5.4808 11 6 4.5642 -1.9728 -4.2104 12 8 4.0043 -1.1624 -3.1752 13 6 2.0323 -0.7105 1.2304 14 8 2.5285 -1.8129 1.1340 15 7 1.9300 -0.1209 2.4380 16 6 1.2708 1.0759 2.5635 17 1 1.5460 1.9122 1.9379 18 6 0.2495 1.2120 3.4950 19 7 -0.0657 2.4017 3.9553 20 14 -0.6757 -0.2964 4.0934 21 1 -0.0534 -0.7940 5.3466 22 1 -2.0929 0.0631 4.3533 23 1 -0.6164 -1.3574 3.0562 24 6 2.4942 -0.7270 3.5598 25 6 3.4139 -1.7572 3.3969 26 6 3.9703 -2.3462 4.5187 27 6 3.5777 -1.8902 5.7698 28 6 2.6546 -0.8661 5.8573 29 7 2.1448 -0.3204 4.7703 30 1 -0.3634 0.4648 0.9165 31 1 -0.3634 -1.0262 -0.0558 32 1 -0.3633 0.5613 -0.8609 33 1 1.2538 0.6547 -2.5588 34 1 2.9319 0.9513 -2.0449 35 1 1.8037 0.6152 -4.9791 36 1 3.4531 1.0980 -4.5138 37 1 2.6840 -1.3814 -6.1242 38 1 3.4818 0.0789 -6.7581 39 1 5.1134 -1.7619 -6.2843 40 1 5.4230 -0.3165 -5.2917 41 1 3.9008 -2.8137 -4.4127 42 1 5.5380 -2.3459 -3.8933 43 1 -0.7792 2.4968 4.6055 44 1 3.6931 -2.0905 2.4083 45 1 4.6903 -3.1456 4.4232 46 1 3.9894 -2.3317 6.6653 47 1 2.3459 -0.5084 6.8285 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000892464907.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:27:17 Heat of formation + Delta-G solvation = -65.819238 kcal Electronic energy + Delta-G solvation = -29775.092579 eV Core-core repulsion = 25731.210619 eV Total energy + Delta-G solvation = -4043.881959 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.31833 -39.52734 -38.54311 -36.99556 -35.09033 -33.72313 -32.44054 -32.08995 -31.58775 -30.79806 -29.09207 -26.97684 -25.27238 -24.35233 -23.94022 -22.67100 -22.18392 -21.71725 -20.41081 -19.41842 -18.28907 -16.94528 -16.57034 -16.13033 -15.93852 -15.82193 -15.53964 -15.05831 -14.72570 -14.60539 -14.58823 -14.28088 -14.08636 -13.71572 -13.55413 -13.07123 -12.89890 -12.79319 -12.65014 -12.43204 -12.21003 -12.15766 -11.93149 -11.51037 -11.40876 -11.35286 -11.23689 -11.05395 -10.88694 -10.71096 -10.58552 -10.31535 -10.12550 -9.71456 -9.48383 -9.34859 -8.91017 -8.74351 -8.54868 -8.35017 -7.28499 -6.44932 -4.31503 1.84083 2.04723 3.22864 3.38330 3.39012 3.44714 3.48674 3.74641 4.24198 4.33824 4.60651 4.65723 4.72120 4.74266 4.90148 4.96439 5.07015 5.21700 5.30713 5.36892 5.42101 5.43218 5.48380 5.53260 5.56507 5.61314 5.66610 5.71038 5.73536 5.76376 5.78781 5.85935 5.93098 5.96307 6.09820 6.10611 6.28108 6.33706 6.59447 6.71880 6.85530 6.96060 7.11475 7.25545 7.50710 7.65299 7.89975 8.17762 8.54978 8.98955 9.26418 9.41498 10.60364 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.016212 B = 0.003398 C = 0.002956 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1726.674403 B = 8237.671647 C = 9471.424370 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.096 3.904 3 H 0.088 0.912 4 O -0.358 6.358 5 C 0.068 3.932 6 C 0.095 3.905 7 H 0.066 0.934 8 C -0.149 4.149 9 C -0.120 4.120 10 C -0.158 4.158 11 C 0.060 3.940 12 O -0.365 6.365 13 C 0.505 3.495 14 O -0.537 6.537 15 N -0.394 5.394 16 C -0.389 4.389 17 H 0.104 0.896 18 C 0.126 3.874 19 N -0.843 5.843 20 Si 0.880 3.120 21 H -0.257 1.257 22 H -0.294 1.294 23 H -0.274 1.274 24 C 0.357 3.643 25 C -0.211 4.211 26 C -0.067 4.067 27 C -0.228 4.228 28 C 0.119 3.881 29 N -0.483 5.483 30 H 0.098 0.902 31 H 0.056 0.944 32 H 0.057 0.943 33 H 0.064 0.936 34 H 0.057 0.943 35 H 0.075 0.925 36 H 0.074 0.926 37 H 0.064 0.936 38 H 0.067 0.933 39 H 0.071 0.929 40 H 0.071 0.929 41 H 0.049 0.951 42 H 0.092 0.908 43 H 0.276 0.724 44 H 0.170 0.830 45 H 0.124 0.876 46 H 0.121 0.879 47 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.849 -4.508 -12.947 14.541 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.036 3.964 3 H 0.106 0.894 4 O -0.276 6.276 5 C -0.009 4.009 6 C 0.037 3.963 7 H 0.084 0.916 8 C -0.187 4.187 9 C -0.158 4.158 10 C -0.195 4.195 11 C -0.017 4.017 12 O -0.283 6.283 13 C 0.296 3.704 14 O -0.417 6.417 15 N -0.107 5.107 16 C -0.514 4.514 17 H 0.121 0.879 18 C -0.087 4.087 19 N -0.474 5.474 20 Si 0.707 3.293 21 H -0.182 1.182 22 H -0.221 1.221 23 H -0.199 1.199 24 C 0.128 3.872 25 C -0.234 4.234 26 C -0.093 4.093 27 C -0.250 4.250 28 C -0.040 4.040 29 N -0.198 5.198 30 H 0.117 0.883 31 H 0.075 0.925 32 H 0.076 0.924 33 H 0.082 0.918 34 H 0.075 0.925 35 H 0.094 0.906 36 H 0.093 0.907 37 H 0.082 0.918 38 H 0.086 0.914 39 H 0.089 0.911 40 H 0.089 0.911 41 H 0.067 0.933 42 H 0.110 0.890 43 H 0.086 0.914 44 H 0.187 0.813 45 H 0.142 0.858 46 H 0.139 0.861 47 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 4.468 -4.361 -12.753 14.200 hybrid contribution -0.140 -0.921 0.256 0.967 sum 4.328 -5.283 -12.497 14.242 Atomic orbital electron populations 1.22203 0.93520 1.02497 1.04219 1.21530 0.95298 0.95889 0.83698 0.89418 1.88018 1.86748 1.33860 1.18980 1.22528 0.99210 0.92840 0.86336 1.22055 0.85606 0.95798 0.92866 0.91647 1.22147 1.02297 0.99225 0.95044 1.21561 0.96712 0.99758 0.97762 1.22219 0.97906 1.00869 0.98547 1.22548 0.98982 0.92573 0.87647 1.88080 1.31988 1.67613 1.40642 1.20676 0.79622 0.85168 0.84965 1.90409 1.45207 1.19857 1.86188 1.41227 1.46221 1.20355 1.02941 1.18760 1.17964 0.87427 1.27199 0.87888 1.25110 0.94803 0.96149 0.92666 1.69803 1.28051 1.23714 1.25806 0.86793 0.77613 0.83761 0.81147 1.18200 1.22142 1.19901 1.18968 0.89713 0.90892 0.87588 1.22875 0.98753 0.99384 1.02374 1.21372 0.97634 0.98114 0.92223 1.21823 1.03431 1.01714 0.97984 1.22359 0.92932 0.92465 0.96247 1.67216 1.25644 1.29402 0.97514 0.88320 0.92476 0.92435 0.91807 0.92513 0.90589 0.90730 0.91769 0.91419 0.91080 0.91051 0.93317 0.88961 0.91430 0.81315 0.85774 0.86060 0.83719 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.10 9.39 37.16 0.35 -2.75 16 2 C 0.10 1.93 2.43 -27.88 -0.07 1.86 16 3 H 0.09 1.67 7.02 -51.93 -0.36 1.30 16 4 O -0.36 -6.86 9.52 -59.48 -0.57 -7.43 16 5 C 0.07 0.99 5.41 37.16 0.20 1.19 16 6 C 0.09 1.23 2.93 -26.69 -0.08 1.15 16 7 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16 8 C -0.15 -1.43 5.42 -26.60 -0.14 -1.57 16 9 C -0.12 -0.99 6.03 -26.54 -0.16 -1.15 16 10 C -0.16 -1.36 6.14 -26.59 -0.16 -1.52 16 11 C 0.06 0.65 6.84 37.20 0.25 0.91 16 12 O -0.36 -5.46 10.37 -40.00 -0.41 -5.88 16 13 C 0.51 12.05 6.87 -10.99 -0.08 11.98 16 14 O -0.54 -13.56 13.20 -14.02 -0.19 -13.75 16 15 N -0.39 -9.90 2.09 -60.71 -0.13 -10.03 16 16 C -0.39 -10.12 6.78 -14.90 -0.10 -10.22 16 17 H 0.10 2.74 7.44 -52.48 -0.39 2.35 16 18 C 0.13 3.35 4.49 -17.49 -0.08 3.27 16 19 N -0.84 -23.10 13.96 55.49 0.77 -22.32 16 20 Si 0.88 22.02 25.55 -169.99 -4.34 17.68 16 21 H -0.26 -6.45 6.18 56.52 0.35 -6.10 16 22 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 23 H -0.27 -7.10 7.11 56.52 0.40 -6.70 16 24 C 0.36 8.83 6.16 -154.64 -0.95 7.88 16 25 C -0.21 -4.69 8.89 -39.22 -0.35 -5.04 16 26 C -0.07 -1.24 10.17 -39.31 -0.40 -1.64 16 27 C -0.23 -3.98 10.11 -39.40 -0.40 -4.38 16 28 C 0.12 2.40 10.94 -17.56 -0.19 2.21 16 29 N -0.48 -11.78 5.68 -12.34 -0.07 -11.85 16 30 H 0.10 2.05 6.08 -51.93 -0.32 1.73 16 31 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16 32 H 0.06 0.87 7.94 -51.93 -0.41 0.45 16 33 H 0.06 0.77 7.94 -51.93 -0.41 0.36 16 34 H 0.06 0.81 8.08 -51.93 -0.42 0.39 16 35 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 36 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 37 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 38 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 39 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 40 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 41 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 42 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 43 H 0.28 7.12 8.31 -40.82 -0.34 6.78 16 44 H 0.17 3.88 5.08 -53.29 -0.27 3.61 16 45 H 0.12 1.84 8.06 -52.48 -0.42 1.42 16 46 H 0.12 1.66 8.06 -52.49 -0.42 1.23 16 47 H 0.15 2.49 8.06 -52.49 -0.42 2.06 16 LS Contribution 373.24 15.07 5.62 5.62 Total: -1.00 -32.16 373.24 -8.93 -41.09 By element: Atomic # 1 Polarization: 11.96 SS G_CDS: -7.27 Total: 4.69 kcal Atomic # 6 Polarization: 4.53 SS G_CDS: -2.35 Total: 2.18 kcal Atomic # 7 Polarization: -44.78 SS G_CDS: 0.58 Total: -44.20 kcal Atomic # 8 Polarization: -25.89 SS G_CDS: -1.17 Total: -27.05 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -4.34 Total: 17.68 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -32.16 -8.93 -41.09 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000892464907.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.731 kcal (2) G-P(sol) polarization free energy of solvation -32.157 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.887 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.932 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.089 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.819 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds