Wall clock time and date at job start Tue Mar 31 2020 18:27:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08994 * 109.47181 * 2 1 4 4 O 1.42903 * 109.46914 * 240.00163 * 2 1 3 5 5 C 1.42894 * 113.99857 * 90.00635 * 4 2 1 6 6 C 1.53008 * 109.47409 * 179.97438 * 5 4 2 7 7 H 1.09000 * 109.47525 * 54.96855 * 6 5 4 8 8 C 1.53080 * 109.48349 * 174.99599 * 6 5 4 9 9 C 1.53178 * 109.16515 * 177.59175 * 8 6 5 10 10 C 1.53185 * 109.03512 * 303.01874 * 9 8 6 11 11 C 1.53092 * 109.15859 * 56.97933 * 10 9 8 12 12 O 1.42898 * 109.41850 * 302.38919 * 11 10 9 13 13 C 1.50701 * 109.46900 * 120.00524 * 2 1 3 14 14 O 1.21272 * 120.00359 * 107.27753 * 13 2 1 15 15 N 1.34770 * 120.00140 * 287.27797 * 13 2 1 16 16 C 1.37217 * 119.99863 * 5.36569 * 15 13 2 17 17 H 1.08003 * 119.99930 * 306.82548 * 16 15 13 18 18 C 1.38898 * 120.00105 * 126.82591 * 16 15 13 19 19 N 1.31406 * 119.99878 * 156.35228 * 18 16 15 20 20 Si 1.86794 * 119.99650 * 336.35361 * 18 16 15 21 21 H 1.48505 * 109.47174 * 94.09918 * 20 18 16 22 22 H 1.48504 * 109.46952 * 214.09618 * 20 18 16 23 23 H 1.48494 * 109.47633 * 334.10124 * 20 18 16 24 24 C 1.39427 * 120.00273 * 185.36963 * 15 13 2 25 25 C 1.39057 * 119.69566 * 14.90288 * 24 15 13 26 26 C 1.38386 * 119.09644 * 179.73351 * 25 24 15 27 27 C 1.38830 * 118.49196 * 0.53071 * 26 25 24 28 28 C 1.38148 * 119.31119 * 359.73052 * 27 26 25 29 29 N 1.31885 * 120.85063 * 0.02562 * 28 27 26 30 30 H 1.08995 * 109.47349 * 296.88967 * 1 2 3 31 31 H 1.09004 * 109.47456 * 176.88994 * 1 2 3 32 32 H 1.09002 * 109.47087 * 56.89509 * 1 2 3 33 33 H 1.09000 * 109.46874 * 299.99386 * 5 4 2 34 34 H 1.08994 * 109.47671 * 59.99460 * 5 4 2 35 35 H 1.09006 * 109.52580 * 297.49869 * 8 6 5 36 36 H 1.09005 * 109.52314 * 57.62080 * 8 6 5 37 37 H 1.08993 * 109.54290 * 62.88633 * 9 8 6 38 38 H 1.09001 * 109.54684 * 183.06217 * 9 8 6 39 39 H 1.08993 * 109.51980 * 176.88148 * 10 9 8 40 40 H 1.08994 * 109.51915 * 297.01091 * 10 9 8 41 41 H 1.08996 * 109.48289 * 62.37687 * 11 10 9 42 42 H 1.09002 * 109.47781 * 182.41120 * 11 10 9 43 43 H 0.96998 * 119.99894 * 179.97438 * 19 18 16 44 44 H 1.07994 * 120.45652 * 359.97438 * 25 24 15 45 45 H 1.08003 * 120.75387 * 180.25903 * 26 25 24 46 46 H 1.07997 * 120.34343 * 179.70980 * 27 26 25 47 47 H 1.07998 * 119.57242 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 8 2.0063 -0.6736 -1.1668 5 6 2.2001 0.1830 -2.2940 6 6 2.7091 -0.6404 -3.4789 7 1 2.0213 -1.4638 -3.6715 8 6 2.7980 0.2515 -4.7199 9 6 3.3648 -0.5643 -5.8859 10 6 4.7278 -1.1344 -5.4808 11 6 4.5642 -1.9728 -4.2104 12 8 4.0043 -1.1624 -3.1752 13 6 2.0323 -0.7105 1.2304 14 8 2.5285 -1.8129 1.1340 15 7 1.9300 -0.1209 2.4380 16 6 1.2708 1.0759 2.5635 17 1 1.5460 1.9122 1.9379 18 6 0.2495 1.2120 3.4950 19 7 -0.0657 2.4017 3.9553 20 14 -0.6757 -0.2964 4.0934 21 1 -0.0534 -0.7940 5.3466 22 1 -2.0929 0.0631 4.3533 23 1 -0.6164 -1.3574 3.0562 24 6 2.4942 -0.7270 3.5598 25 6 3.4139 -1.7572 3.3969 26 6 3.9703 -2.3462 4.5187 27 6 3.5777 -1.8902 5.7698 28 6 2.6546 -0.8661 5.8573 29 7 2.1448 -0.3204 4.7703 30 1 -0.3634 0.4648 0.9165 31 1 -0.3634 -1.0262 -0.0558 32 1 -0.3633 0.5613 -0.8609 33 1 1.2538 0.6547 -2.5588 34 1 2.9319 0.9513 -2.0449 35 1 1.8037 0.6152 -4.9791 36 1 3.4531 1.0980 -4.5138 37 1 2.6840 -1.3814 -6.1242 38 1 3.4818 0.0789 -6.7581 39 1 5.1134 -1.7619 -6.2843 40 1 5.4230 -0.3165 -5.2917 41 1 3.9008 -2.8137 -4.4127 42 1 5.5380 -2.3459 -3.8933 43 1 -0.7792 2.4968 4.6055 44 1 3.6931 -2.0905 2.4083 45 1 4.6903 -3.1456 4.4232 46 1 3.9894 -2.3317 6.6653 47 1 2.3459 -0.5084 6.8285 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000892464907.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:27:16 Heat of formation + Delta-G solvation = -84.303564 kcal Electronic energy + Delta-G solvation = -29775.894119 eV Core-core repulsion = 25731.210619 eV Total energy + Delta-G solvation = -4044.683500 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.05164 -40.55853 -40.08285 -38.45437 -36.95732 -34.54566 -34.10221 -33.56208 -33.20455 -32.15531 -30.68190 -27.98958 -27.19669 -25.73226 -25.00398 -24.26849 -23.44910 -23.06849 -21.37437 -21.05420 -20.07837 -18.56415 -17.74174 -17.68865 -17.38682 -17.04385 -16.98316 -16.51330 -16.35548 -16.23109 -15.68434 -15.45485 -15.36501 -15.31804 -14.83487 -14.71879 -14.50972 -14.34086 -13.84267 -13.66811 -13.58204 -13.47891 -13.20893 -13.07572 -12.96424 -12.90656 -12.51541 -12.28078 -12.14623 -12.09420 -11.96337 -11.57378 -11.46690 -11.22442 -10.82639 -10.71107 -10.52409 -10.38149 -10.30938 -10.08147 -9.04899 -8.49764 -6.34985 0.21526 0.45908 1.26229 1.36569 1.40367 1.66781 1.86427 2.33230 2.76784 2.83103 2.97698 3.11034 3.72203 3.83954 3.85692 3.93101 3.96975 4.02363 4.06509 4.10263 4.15146 4.20344 4.29541 4.33315 4.41772 4.43069 4.49356 4.54957 4.65534 4.70111 4.79544 4.84398 4.88799 4.93972 5.00100 5.07328 5.12109 5.16914 5.18153 5.31139 5.38940 5.40744 5.44449 5.86317 5.95768 6.10408 6.24512 6.36339 6.75847 7.05079 7.42160 7.55021 8.58689 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.016212 B = 0.003398 C = 0.002956 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1726.674403 B = 8237.671647 C = 9471.424370 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.103 3.897 3 H 0.092 0.908 4 O -0.380 6.380 5 C 0.058 3.942 6 C 0.092 3.908 7 H 0.062 0.938 8 C -0.143 4.143 9 C -0.120 4.120 10 C -0.152 4.152 11 C 0.050 3.950 12 O -0.403 6.403 13 C 0.493 3.507 14 O -0.561 6.561 15 N -0.407 5.407 16 C -0.379 4.379 17 H 0.088 0.912 18 C 0.107 3.893 19 N -0.873 5.873 20 Si 0.919 3.081 21 H -0.257 1.257 22 H -0.285 1.285 23 H -0.294 1.294 24 C 0.319 3.681 25 C -0.229 4.229 26 C -0.059 4.059 27 C -0.200 4.200 28 C 0.100 3.900 29 N -0.520 5.520 30 H 0.074 0.926 31 H 0.050 0.950 32 H 0.095 0.905 33 H 0.092 0.908 34 H 0.053 0.947 35 H 0.095 0.905 36 H 0.072 0.928 37 H 0.069 0.931 38 H 0.087 0.913 39 H 0.092 0.908 40 H 0.066 0.934 41 H 0.051 0.949 42 H 0.095 0.905 43 H 0.280 0.720 44 H 0.155 0.845 45 H 0.166 0.834 46 H 0.174 0.826 47 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.465 -5.407 -13.213 15.287 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.043 3.957 3 H 0.110 0.890 4 O -0.298 6.298 5 C -0.018 4.018 6 C 0.035 3.965 7 H 0.079 0.921 8 C -0.181 4.181 9 C -0.157 4.157 10 C -0.190 4.190 11 C -0.026 4.026 12 O -0.323 6.323 13 C 0.284 3.716 14 O -0.442 6.442 15 N -0.121 5.121 16 C -0.504 4.504 17 H 0.106 0.894 18 C -0.104 4.104 19 N -0.506 5.506 20 Si 0.747 3.253 21 H -0.182 1.182 22 H -0.212 1.212 23 H -0.220 1.220 24 C 0.091 3.909 25 C -0.251 4.251 26 C -0.085 4.085 27 C -0.221 4.221 28 C -0.058 4.058 29 N -0.236 5.236 30 H 0.093 0.907 31 H 0.069 0.931 32 H 0.114 0.886 33 H 0.110 0.890 34 H 0.071 0.929 35 H 0.113 0.887 36 H 0.090 0.910 37 H 0.088 0.912 38 H 0.106 0.894 39 H 0.110 0.890 40 H 0.085 0.915 41 H 0.069 0.931 42 H 0.113 0.887 43 H 0.090 0.910 44 H 0.172 0.828 45 H 0.184 0.816 46 H 0.191 0.809 47 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges 5.089 -5.258 -13.012 14.928 hybrid contribution -0.163 -0.742 0.408 0.862 sum 4.926 -6.000 -12.604 14.803 Atomic orbital electron populations 1.22122 0.92386 1.02439 1.04664 1.21436 0.95989 0.95386 0.82939 0.88992 1.87994 1.86861 1.35352 1.19642 1.22897 1.00687 0.92816 0.85410 1.22171 0.84820 0.96145 0.93396 0.92052 1.22125 1.03543 0.98578 0.93827 1.21600 0.96301 1.00097 0.97702 1.22181 0.98358 1.00673 0.97777 1.22761 0.98949 0.92779 0.88104 1.88018 1.32935 1.68467 1.42893 1.21377 0.79175 0.85259 0.85752 1.90379 1.46328 1.20869 1.86648 1.41331 1.46752 1.20258 1.03800 1.18607 1.17711 0.87540 1.26533 0.89426 1.25382 0.95125 0.97023 0.92827 1.69828 1.29156 1.24574 1.27070 0.86201 0.77323 0.81717 0.80083 1.18229 1.21244 1.22032 1.19243 0.91513 0.92403 0.87700 1.22863 0.99301 0.99658 1.03316 1.21868 0.97193 0.98112 0.91292 1.22322 1.00872 0.99459 0.99423 1.23024 0.93465 0.93169 0.96181 1.67131 1.27277 1.30887 0.98289 0.90703 0.93121 0.88613 0.89012 0.92858 0.88686 0.90963 0.91198 0.89443 0.88951 0.91487 0.93063 0.88710 0.91016 0.82802 0.81607 0.80906 0.81080 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.95 9.39 71.98 0.68 -5.27 16 2 C 0.10 4.25 2.43 29.85 0.07 4.32 16 3 H 0.09 3.63 7.02 -2.39 -0.02 3.61 16 4 O -0.38 -14.86 9.52 -125.79 -1.20 -16.06 16 5 C 0.06 1.67 5.41 71.98 0.39 2.06 16 6 C 0.09 2.35 2.93 30.62 0.09 2.44 16 7 H 0.06 1.57 8.14 -2.39 -0.02 1.55 16 8 C -0.14 -2.49 5.42 30.68 0.17 -2.32 16 9 C -0.12 -1.69 6.03 30.72 0.19 -1.50 16 10 C -0.15 -2.38 6.14 30.69 0.19 -2.19 16 11 C 0.05 1.09 6.84 72.01 0.49 1.58 16 12 O -0.40 -12.27 10.37 -144.42 -1.50 -13.76 16 13 C 0.49 24.46 6.87 87.66 0.60 25.06 16 14 O -0.56 -29.53 13.20 15.72 0.21 -29.32 16 15 N -0.41 -21.15 2.09 -464.38 -0.97 -22.12 16 16 C -0.38 -20.37 6.78 84.01 0.57 -19.80 16 17 H 0.09 4.87 7.44 -2.91 -0.02 4.84 16 18 C 0.11 5.79 4.49 84.91 0.38 6.17 16 19 N -0.87 -48.64 13.96 21.65 0.30 -48.34 16 20 Si 0.92 46.17 25.55 68.60 1.75 47.93 16 21 H -0.26 -12.77 6.18 99.48 0.62 -12.15 16 22 H -0.29 -13.66 7.11 99.48 0.71 -12.95 16 23 H -0.29 -15.59 7.11 99.48 0.71 -14.89 16 24 C 0.32 16.02 6.16 132.90 0.82 16.84 16 25 C -0.23 -10.16 8.89 22.50 0.20 -9.96 16 26 C -0.06 -1.99 10.17 22.45 0.23 -1.76 16 27 C -0.20 -6.18 10.11 22.39 0.23 -5.95 16 28 C 0.10 3.80 10.94 84.66 0.93 4.73 16 29 N -0.52 -25.30 5.68 -192.96 -1.10 -26.40 16 30 H 0.07 3.18 6.08 -2.39 -0.01 3.17 16 31 H 0.05 1.92 8.14 -2.38 -0.02 1.91 16 32 H 0.10 2.77 7.94 -2.39 -0.02 2.76 16 33 H 0.09 2.08 7.94 -2.39 -0.02 2.06 16 34 H 0.05 1.55 8.08 -2.39 -0.02 1.53 16 35 H 0.09 1.28 8.14 -2.38 -0.02 1.26 16 36 H 0.07 1.30 8.14 -2.38 -0.02 1.28 16 37 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 38 H 0.09 0.93 8.14 -2.39 -0.02 0.91 16 39 H 0.09 1.05 8.14 -2.39 -0.02 1.03 16 40 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 41 H 0.05 1.05 8.14 -2.39 -0.02 1.03 16 42 H 0.09 1.90 8.14 -2.39 -0.02 1.89 16 43 H 0.28 14.63 8.31 -92.71 -0.77 13.86 16 44 H 0.15 7.29 5.08 -15.59 -0.08 7.21 16 45 H 0.17 4.18 8.06 -2.91 -0.02 4.16 16 46 H 0.17 3.60 8.06 -2.91 -0.02 3.58 16 47 H 0.17 5.39 8.06 -2.91 -0.02 5.37 16 Total: -1.00 -73.14 373.24 4.52 -68.63 By element: Atomic # 1 Polarization: 24.20 SS G_CDS: 0.80 Total: 25.00 kcal Atomic # 6 Polarization: 8.23 SS G_CDS: 6.21 Total: 14.44 kcal Atomic # 7 Polarization: -95.09 SS G_CDS: -1.77 Total: -96.86 kcal Atomic # 8 Polarization: -56.66 SS G_CDS: -2.49 Total: -59.14 kcal Atomic # 14 Polarization: 46.17 SS G_CDS: 1.75 Total: 47.93 kcal Total: -73.14 4.52 -68.63 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000892464907.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.675 kcal (2) G-P(sol) polarization free energy of solvation -73.144 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.820 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.516 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.628 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.304 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds