Wall clock time and date at job start Tue Mar 31 2020 18:27:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09004 * 109.46707 * 2 1 4 4 O 1.42893 * 109.46856 * 119.99406 * 2 1 3 5 5 C 1.42902 * 114.00327 * 269.99817 * 4 2 1 6 6 C 1.52996 * 109.47323 * 179.97438 * 5 4 2 7 7 H 1.09004 * 109.48125 * 54.98489 * 6 5 4 8 8 C 1.53100 * 109.48153 * 175.00297 * 6 5 4 9 9 C 1.53178 * 109.16324 * 177.59641 * 8 6 5 10 10 C 1.53181 * 109.03351 * 303.02088 * 9 8 6 11 11 C 1.53088 * 109.16506 * 56.98332 * 10 9 8 12 12 O 1.42898 * 109.41465 * 302.38728 * 11 10 9 13 13 C 1.50698 * 109.47508 * 239.99853 * 2 1 3 14 14 O 1.21274 * 119.99541 * 301.25202 * 13 2 1 15 15 N 1.34774 * 120.00581 * 121.24758 * 13 2 1 16 16 C 1.37213 * 120.00323 * 188.12665 * 15 13 2 17 17 H 1.07995 * 119.99775 * 209.11592 * 16 15 13 18 18 C 1.38889 * 119.99865 * 29.11934 * 16 15 13 19 19 N 1.31411 * 120.00182 * 14.22641 * 18 16 15 20 20 Si 1.86801 * 119.99938 * 194.22975 * 18 16 15 21 21 H 1.48493 * 109.47148 * 59.99562 * 20 18 16 22 22 H 1.48501 * 109.47311 * 180.02562 * 20 18 16 23 23 H 1.48500 * 109.46848 * 300.00183 * 20 18 16 24 24 C 1.39430 * 119.99563 * 8.12605 * 15 13 2 25 25 C 1.39063 * 119.69659 * 296.09742 * 24 15 13 26 26 C 1.38380 * 119.09651 * 180.02562 * 25 24 15 27 27 C 1.38826 * 118.49317 * 359.72546 * 26 25 24 28 28 C 1.38148 * 119.31011 * 0.55856 * 27 26 25 29 29 N 1.31881 * 120.85051 * 359.43040 * 28 27 26 30 30 H 1.08997 * 109.47115 * 202.61826 * 1 2 3 31 31 H 1.09002 * 109.47384 * 322.62152 * 1 2 3 32 32 H 1.09004 * 109.46760 * 82.61874 * 1 2 3 33 33 H 1.08996 * 109.47515 * 300.00977 * 5 4 2 34 34 H 1.09006 * 109.46402 * 60.00307 * 5 4 2 35 35 H 1.08998 * 109.51586 * 297.50180 * 8 6 5 36 36 H 1.08998 * 109.51500 * 57.62532 * 8 6 5 37 37 H 1.08998 * 109.54153 * 62.88529 * 9 8 6 38 38 H 1.08996 * 109.54372 * 183.06605 * 9 8 6 39 39 H 1.09004 * 109.51747 * 176.88810 * 10 9 8 40 40 H 1.09002 * 109.52253 * 297.01087 * 10 9 8 41 41 H 1.09001 * 109.48258 * 62.37466 * 11 10 9 42 42 H 1.09000 * 109.47998 * 182.41038 * 11 10 9 43 43 H 0.97002 * 120.00189 * 184.91471 * 19 18 16 44 44 H 1.07996 * 120.45416 * 359.97438 * 25 24 15 45 45 H 1.08004 * 120.75521 * 180.02562 * 26 25 24 46 46 H 1.07998 * 120.34638 * 180.28297 * 27 26 25 47 47 H 1.08000 * 119.57633 * 179.70892 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0062 -0.6735 1.1668 5 6 2.2000 0.1831 2.2941 6 6 2.7077 -0.6405 3.4792 7 1 3.6064 -1.1834 3.1863 8 6 3.0338 0.2935 4.6477 9 6 3.4840 -0.5429 5.8495 10 6 2.3826 -1.5486 6.1988 11 6 2.0818 -2.4114 4.9706 12 8 1.6991 -1.5696 3.8810 13 6 2.0324 -0.7104 -1.2304 14 8 1.7208 -1.8647 -1.4338 15 7 2.8279 -0.0631 -2.1048 16 6 3.1494 -0.6487 -3.3033 17 1 4.0883 -0.4156 -3.7835 18 6 2.2674 -1.5410 -3.8990 19 7 1.0251 -1.6172 -3.4774 20 14 2.8471 -2.6330 -5.2993 21 1 3.9628 -3.4920 -4.8278 22 1 1.7231 -3.4881 -5.7582 23 1 3.3162 -1.7864 -6.4255 24 6 3.3241 1.2017 -1.7915 25 6 2.4440 2.2655 -1.6261 26 6 2.9500 3.5156 -1.3158 27 6 4.3238 3.6577 -1.1753 28 6 5.1398 2.5583 -1.3595 29 7 4.6290 1.3788 -1.6549 30 1 -0.3633 -0.9486 0.3952 31 1 -0.3634 0.8166 0.6239 32 1 -0.3633 0.1320 -1.0192 33 1 2.9318 0.9516 2.0450 34 1 1.2536 0.6549 2.5587 35 1 3.8340 0.9742 4.3574 36 1 2.1461 0.8672 4.9140 37 1 4.4000 -1.0778 5.5987 38 1 3.6656 0.1117 6.7018 39 1 2.7172 -2.1851 7.0180 40 1 1.4818 -1.0129 6.4984 41 1 2.9721 -2.9777 4.6972 42 1 1.2690 -3.1003 5.2005 43 1 0.4288 -2.2889 -3.8439 44 1 1.3801 2.1184 -1.7392 45 1 2.2908 4.3604 -1.1811 46 1 4.7505 4.6187 -0.9290 47 1 6.2095 2.6650 -1.2559 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000892464909.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:27:20 Heat of formation + Delta-G solvation = -57.284476 kcal Electronic energy + Delta-G solvation = -30142.998904 eV Core-core repulsion = 26099.487040 eV Total energy + Delta-G solvation = -4043.511864 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -40.13924 -39.46851 -38.29926 -36.84051 -34.15579 -33.68694 -32.51024 -32.02546 -31.83077 -30.14844 -29.22977 -26.91809 -25.43160 -24.22758 -23.48063 -22.88957 -22.25735 -21.91141 -20.38724 -19.45772 -17.54167 -16.93116 -16.50710 -16.28232 -16.03111 -15.85245 -15.53487 -14.85279 -14.70891 -14.61646 -14.32835 -14.24192 -13.95499 -13.61966 -13.12650 -13.04223 -12.86123 -12.78105 -12.52981 -12.32241 -12.20804 -11.72381 -11.67658 -11.38506 -11.37832 -11.26093 -11.15476 -10.90848 -10.80137 -10.61473 -10.49235 -10.27515 -10.16829 -9.58582 -9.43596 -9.36798 -9.27951 -8.95846 -8.71519 -7.79320 -7.14249 -6.00850 -3.87402 1.53933 1.70891 3.35504 3.40869 3.43315 3.62105 3.78361 4.16010 4.20231 4.50556 4.63737 4.64344 4.69166 4.76304 4.96381 5.10777 5.13416 5.17204 5.20827 5.32893 5.36805 5.43561 5.45972 5.48041 5.52922 5.58498 5.62988 5.66064 5.68670 5.74634 5.75365 5.84533 5.92010 5.96953 6.02905 6.12605 6.15123 6.26099 6.43453 6.48482 6.54235 6.86560 7.04992 7.29303 7.59921 7.67281 8.17950 8.48219 8.92407 9.10468 9.59103 10.18038 10.96189 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.011204 B = 0.004042 C = 0.003322 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2498.544745 B = 6925.787747 C = 8425.982440 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.072 3.928 3 H 0.063 0.937 4 O -0.356 6.356 5 C 0.070 3.930 6 C 0.094 3.906 7 H 0.066 0.934 8 C -0.148 4.148 9 C -0.121 4.121 10 C -0.157 4.157 11 C 0.059 3.941 12 O -0.366 6.366 13 C 0.465 3.535 14 O -0.466 6.466 15 N -0.406 5.406 16 C -0.327 4.327 17 H 0.090 0.910 18 C 0.042 3.958 19 N -0.808 5.808 20 Si 0.923 3.077 21 H -0.276 1.276 22 H -0.285 1.285 23 H -0.278 1.278 24 C 0.381 3.619 25 C -0.187 4.187 26 C -0.068 4.068 27 C -0.209 4.209 28 C 0.114 3.886 29 N -0.495 5.495 30 H 0.070 0.930 31 H 0.046 0.954 32 H 0.074 0.926 33 H 0.057 0.943 34 H 0.054 0.946 35 H 0.075 0.925 36 H 0.073 0.927 37 H 0.064 0.936 38 H 0.067 0.933 39 H 0.071 0.929 40 H 0.070 0.930 41 H 0.049 0.951 42 H 0.092 0.908 43 H 0.265 0.735 44 H 0.134 0.866 45 H 0.129 0.871 46 H 0.127 0.873 47 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.615 9.560 15.451 18.357 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.011 3.989 3 H 0.080 0.920 4 O -0.275 6.275 5 C -0.008 4.008 6 C 0.036 3.964 7 H 0.084 0.916 8 C -0.186 4.186 9 C -0.158 4.158 10 C -0.194 4.194 11 C -0.018 4.018 12 O -0.284 6.284 13 C 0.252 3.748 14 O -0.335 6.335 15 N -0.126 5.126 16 C -0.453 4.453 17 H 0.107 0.893 18 C -0.168 4.168 19 N -0.445 5.445 20 Si 0.750 3.250 21 H -0.201 1.201 22 H -0.211 1.211 23 H -0.204 1.204 24 C 0.153 3.847 25 C -0.210 4.210 26 C -0.094 4.094 27 C -0.230 4.230 28 C -0.045 4.045 29 N -0.208 5.208 30 H 0.090 0.910 31 H 0.065 0.935 32 H 0.093 0.907 33 H 0.075 0.925 34 H 0.072 0.928 35 H 0.093 0.907 36 H 0.091 0.909 37 H 0.083 0.917 38 H 0.086 0.914 39 H 0.089 0.911 40 H 0.089 0.911 41 H 0.068 0.932 42 H 0.111 0.889 43 H 0.076 0.924 44 H 0.152 0.848 45 H 0.147 0.853 46 H 0.145 0.855 47 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 2.602 7.848 15.081 17.198 hybrid contribution -0.091 0.633 -0.348 0.728 sum 2.510 8.481 14.733 17.184 Atomic orbital electron populations 1.22052 0.94351 1.02059 1.02778 1.22302 0.95116 0.95595 0.85852 0.91960 1.88073 1.86706 1.33856 1.18815 1.22475 0.99740 0.92417 0.86130 1.22059 0.91841 0.90312 0.92147 0.91576 1.22138 1.02283 0.98586 0.95586 1.21563 0.98414 0.97964 0.97878 1.22213 0.99602 0.98880 0.98755 1.22555 1.00803 0.92365 0.86098 1.88047 1.39786 1.50037 1.50555 1.19091 0.84571 0.87727 0.83457 1.90539 1.54917 1.16223 1.71855 1.41113 1.44243 1.11277 1.15980 1.19227 1.03150 1.27456 0.95441 0.89272 1.25000 0.94183 0.99281 0.98294 1.70040 1.03814 1.31257 1.39425 0.86080 0.78225 0.80100 0.80644 1.20128 1.21069 1.20357 1.18850 0.87770 0.87687 0.90413 1.22238 1.01641 0.92736 1.04426 1.21394 0.95357 0.96676 0.96018 1.21939 0.94452 1.00321 1.06242 1.22541 0.99913 0.87486 0.94549 1.67475 1.14919 1.25181 1.13193 0.91048 0.93496 0.90691 0.92494 0.92823 0.90659 0.90859 0.91688 0.91428 0.91061 0.91121 0.93227 0.88947 0.92416 0.84803 0.85279 0.85471 0.83316 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.05 9.57 37.16 0.36 -2.69 16 2 C 0.07 1.58 2.48 -27.88 -0.07 1.51 16 3 H 0.06 1.22 4.36 -51.93 -0.23 1.00 16 4 O -0.36 -7.69 9.93 -49.68 -0.49 -8.18 16 5 C 0.07 1.12 5.41 37.16 0.20 1.33 16 6 C 0.09 1.36 2.93 -26.68 -0.08 1.28 16 7 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 8 C -0.15 -1.56 5.42 -26.59 -0.14 -1.70 16 9 C -0.12 -1.09 6.03 -26.55 -0.16 -1.25 16 10 C -0.16 -1.44 6.14 -26.59 -0.16 -1.60 16 11 C 0.06 0.69 6.84 37.20 0.25 0.94 16 12 O -0.37 -5.76 10.37 -40.00 -0.41 -6.17 16 13 C 0.46 12.58 5.69 -10.99 -0.06 12.52 16 14 O -0.47 -14.48 13.53 0.78 0.01 -14.47 16 15 N -0.41 -10.84 2.75 -60.71 -0.17 -11.00 16 16 C -0.33 -9.40 9.45 -14.90 -0.14 -9.54 16 17 H 0.09 2.53 7.87 -52.49 -0.41 2.12 16 18 C 0.04 1.20 4.61 -17.49 -0.08 1.12 16 19 N -0.81 -23.96 10.19 55.49 0.57 -23.40 16 20 Si 0.92 22.42 29.58 -169.99 -5.03 17.39 16 21 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 22 H -0.29 -6.84 7.11 56.52 0.40 -6.43 16 23 H -0.28 -6.47 7.11 56.52 0.40 -6.06 16 24 C 0.38 8.52 5.46 -154.64 -0.84 7.67 16 25 C -0.19 -3.44 7.48 -39.22 -0.29 -3.73 16 26 C -0.07 -0.96 10.17 -39.31 -0.40 -1.36 16 27 C -0.21 -2.76 10.11 -39.40 -0.40 -3.16 16 28 C 0.11 1.79 11.18 -17.56 -0.20 1.60 16 29 N -0.49 -10.41 10.36 -12.34 -0.13 -10.54 16 30 H 0.07 1.49 8.12 -51.93 -0.42 1.07 16 31 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 32 H 0.07 1.57 7.94 -51.93 -0.41 1.16 16 33 H 0.06 0.84 8.08 -51.93 -0.42 0.42 16 34 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 35 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 36 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 37 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 38 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 39 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 40 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 41 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 42 H 0.09 0.97 8.14 -51.93 -0.42 0.54 16 43 H 0.27 7.60 8.32 -40.82 -0.34 7.26 16 44 H 0.13 2.43 7.82 -52.49 -0.41 2.02 16 45 H 0.13 1.36 8.06 -52.48 -0.42 0.94 16 46 H 0.13 1.21 8.06 -52.49 -0.42 0.79 16 47 H 0.15 1.82 8.06 -52.49 -0.42 1.40 16 LS Contribution 383.22 15.07 5.78 5.78 Total: -1.00 -35.76 383.22 -9.46 -45.22 By element: Atomic # 1 Polarization: 9.82 SS G_CDS: -7.36 Total: 2.46 kcal Atomic # 6 Polarization: 5.14 SS G_CDS: -2.22 Total: 2.92 kcal Atomic # 7 Polarization: -45.21 SS G_CDS: 0.27 Total: -44.94 kcal Atomic # 8 Polarization: -27.93 SS G_CDS: -0.90 Total: -28.83 kcal Atomic # 14 Polarization: 22.42 SS G_CDS: -5.03 Total: 17.39 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -35.76 -9.46 -45.22 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000892464909.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.067 kcal (2) G-P(sol) polarization free energy of solvation -35.760 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.827 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.458 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.218 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.284 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds