Wall clock time and date at job start Tue Mar 31 2020 18:27:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09004 * 109.46707 * 2 1 4 4 O 1.42893 * 109.46856 * 119.99406 * 2 1 3 5 5 C 1.42902 * 114.00327 * 269.99817 * 4 2 1 6 6 C 1.52996 * 109.47323 * 179.97438 * 5 4 2 7 7 H 1.09004 * 109.48125 * 54.98489 * 6 5 4 8 8 C 1.53100 * 109.48153 * 175.00297 * 6 5 4 9 9 C 1.53178 * 109.16324 * 177.59641 * 8 6 5 10 10 C 1.53181 * 109.03351 * 303.02088 * 9 8 6 11 11 C 1.53088 * 109.16506 * 56.98332 * 10 9 8 12 12 O 1.42898 * 109.41465 * 302.38728 * 11 10 9 13 13 C 1.50698 * 109.47508 * 239.99853 * 2 1 3 14 14 O 1.21274 * 119.99541 * 301.25202 * 13 2 1 15 15 N 1.34774 * 120.00581 * 121.24758 * 13 2 1 16 16 C 1.37213 * 120.00323 * 188.12665 * 15 13 2 17 17 H 1.07995 * 119.99775 * 209.11592 * 16 15 13 18 18 C 1.38889 * 119.99865 * 29.11934 * 16 15 13 19 19 N 1.31411 * 120.00182 * 14.22641 * 18 16 15 20 20 Si 1.86801 * 119.99938 * 194.22975 * 18 16 15 21 21 H 1.48493 * 109.47148 * 59.99562 * 20 18 16 22 22 H 1.48501 * 109.47311 * 180.02562 * 20 18 16 23 23 H 1.48500 * 109.46848 * 300.00183 * 20 18 16 24 24 C 1.39430 * 119.99563 * 8.12605 * 15 13 2 25 25 C 1.39063 * 119.69659 * 296.09742 * 24 15 13 26 26 C 1.38380 * 119.09651 * 180.02562 * 25 24 15 27 27 C 1.38826 * 118.49317 * 359.72546 * 26 25 24 28 28 C 1.38148 * 119.31011 * 0.55856 * 27 26 25 29 29 N 1.31881 * 120.85051 * 359.43040 * 28 27 26 30 30 H 1.08997 * 109.47115 * 202.61826 * 1 2 3 31 31 H 1.09002 * 109.47384 * 322.62152 * 1 2 3 32 32 H 1.09004 * 109.46760 * 82.61874 * 1 2 3 33 33 H 1.08996 * 109.47515 * 300.00977 * 5 4 2 34 34 H 1.09006 * 109.46402 * 60.00307 * 5 4 2 35 35 H 1.08998 * 109.51586 * 297.50180 * 8 6 5 36 36 H 1.08998 * 109.51500 * 57.62532 * 8 6 5 37 37 H 1.08998 * 109.54153 * 62.88529 * 9 8 6 38 38 H 1.08996 * 109.54372 * 183.06605 * 9 8 6 39 39 H 1.09004 * 109.51747 * 176.88810 * 10 9 8 40 40 H 1.09002 * 109.52253 * 297.01087 * 10 9 8 41 41 H 1.09001 * 109.48258 * 62.37466 * 11 10 9 42 42 H 1.09000 * 109.47998 * 182.41038 * 11 10 9 43 43 H 0.97002 * 120.00189 * 184.91471 * 19 18 16 44 44 H 1.07996 * 120.45416 * 359.97438 * 25 24 15 45 45 H 1.08004 * 120.75521 * 180.02562 * 26 25 24 46 46 H 1.07998 * 120.34638 * 180.28297 * 27 26 25 47 47 H 1.08000 * 119.57633 * 179.70892 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0062 -0.6735 1.1668 5 6 2.2000 0.1831 2.2941 6 6 2.7077 -0.6405 3.4792 7 1 3.6064 -1.1834 3.1863 8 6 3.0338 0.2935 4.6477 9 6 3.4840 -0.5429 5.8495 10 6 2.3826 -1.5486 6.1988 11 6 2.0818 -2.4114 4.9706 12 8 1.6991 -1.5696 3.8810 13 6 2.0324 -0.7104 -1.2304 14 8 1.7208 -1.8647 -1.4338 15 7 2.8279 -0.0631 -2.1048 16 6 3.1494 -0.6487 -3.3033 17 1 4.0883 -0.4156 -3.7835 18 6 2.2674 -1.5410 -3.8990 19 7 1.0251 -1.6172 -3.4774 20 14 2.8471 -2.6330 -5.2993 21 1 3.9628 -3.4920 -4.8278 22 1 1.7231 -3.4881 -5.7582 23 1 3.3162 -1.7864 -6.4255 24 6 3.3241 1.2017 -1.7915 25 6 2.4440 2.2655 -1.6261 26 6 2.9500 3.5156 -1.3158 27 6 4.3238 3.6577 -1.1753 28 6 5.1398 2.5583 -1.3595 29 7 4.6290 1.3788 -1.6549 30 1 -0.3633 -0.9486 0.3952 31 1 -0.3634 0.8166 0.6239 32 1 -0.3633 0.1320 -1.0192 33 1 2.9318 0.9516 2.0450 34 1 1.2536 0.6549 2.5587 35 1 3.8340 0.9742 4.3574 36 1 2.1461 0.8672 4.9140 37 1 4.4000 -1.0778 5.5987 38 1 3.6656 0.1117 6.7018 39 1 2.7172 -2.1851 7.0180 40 1 1.4818 -1.0129 6.4984 41 1 2.9721 -2.9777 4.6972 42 1 1.2690 -3.1003 5.2005 43 1 0.4288 -2.2889 -3.8439 44 1 1.3801 2.1184 -1.7392 45 1 2.2908 4.3604 -1.1811 46 1 4.7505 4.6187 -0.9290 47 1 6.2095 2.6650 -1.2559 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000892464909.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:27:19 Heat of formation + Delta-G solvation = -81.371003 kcal Electronic energy + Delta-G solvation = -30144.043375 eV Core-core repulsion = 26099.487040 eV Total energy + Delta-G solvation = -4044.556335 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.69807 -40.53254 -39.90510 -38.46592 -36.05171 -34.57570 -34.22511 -33.46703 -33.16129 -31.69552 -30.73632 -28.02490 -27.39164 -25.35235 -24.92859 -24.20479 -23.69201 -23.14623 -21.43492 -21.07014 -19.29979 -18.65847 -17.86641 -17.58545 -17.37540 -16.96598 -16.91912 -16.61210 -16.02481 -15.95644 -15.74566 -15.46220 -15.27130 -15.08256 -14.65374 -14.44353 -14.26866 -13.86920 -13.75308 -13.63151 -13.55515 -13.43357 -13.21800 -12.88770 -12.79784 -12.70103 -12.65409 -12.35515 -12.16911 -12.13116 -11.96229 -11.61493 -11.39076 -11.29138 -10.93821 -10.75318 -10.54767 -10.41588 -10.24994 -9.50000 -9.18703 -8.13533 -6.05238 0.20333 0.46226 1.35837 1.44155 1.48863 1.98905 2.27092 2.66686 2.75965 2.93322 3.03215 3.21550 3.63468 3.80425 3.87723 3.89736 3.94637 4.01464 4.03932 4.07440 4.12709 4.20039 4.29440 4.31539 4.35372 4.35969 4.44091 4.59954 4.63229 4.65397 4.72251 4.83217 4.86368 4.90666 4.91680 5.04649 5.09108 5.14843 5.22065 5.24175 5.31974 5.36256 5.38646 5.81357 6.07360 6.17865 6.31448 6.79751 7.05466 7.13623 7.62555 8.20717 8.81420 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.011204 B = 0.004042 C = 0.003322 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2498.544745 B = 6925.787747 C = 8425.982440 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.087 3.913 3 H 0.086 0.914 4 O -0.391 6.391 5 C 0.063 3.937 6 C 0.092 3.908 7 H 0.045 0.955 8 C -0.139 4.139 9 C -0.121 4.121 10 C -0.150 4.150 11 C 0.048 3.952 12 O -0.399 6.399 13 C 0.450 3.550 14 O -0.531 6.531 15 N -0.421 5.421 16 C -0.349 4.349 17 H 0.080 0.920 18 C -0.007 4.007 19 N -0.835 5.835 20 Si 0.982 3.018 21 H -0.282 1.282 22 H -0.281 1.281 23 H -0.258 1.258 24 C 0.334 3.666 25 C -0.196 4.196 26 C -0.053 4.053 27 C -0.175 4.175 28 C 0.103 3.897 29 N -0.538 5.538 30 H 0.050 0.950 31 H 0.092 0.908 32 H 0.054 0.946 33 H 0.072 0.928 34 H 0.069 0.931 35 H 0.090 0.910 36 H 0.081 0.919 37 H 0.062 0.938 38 H 0.092 0.908 39 H 0.092 0.908 40 H 0.073 0.927 41 H 0.043 0.957 42 H 0.099 0.901 43 H 0.260 0.740 44 H 0.126 0.874 45 H 0.178 0.822 46 H 0.183 0.817 47 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.778 13.603 17.536 22.513 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.026 3.974 3 H 0.104 0.896 4 O -0.310 6.310 5 C -0.013 4.013 6 C 0.034 3.966 7 H 0.063 0.937 8 C -0.177 4.177 9 C -0.158 4.158 10 C -0.187 4.187 11 C -0.028 4.028 12 O -0.319 6.319 13 C 0.238 3.762 14 O -0.405 6.405 15 N -0.140 5.140 16 C -0.476 4.476 17 H 0.098 0.902 18 C -0.213 4.213 19 N -0.472 5.472 20 Si 0.806 3.194 21 H -0.208 1.208 22 H -0.206 1.206 23 H -0.182 1.182 24 C 0.109 3.891 25 C -0.219 4.219 26 C -0.079 4.079 27 C -0.195 4.195 28 C -0.056 4.056 29 N -0.252 5.252 30 H 0.069 0.931 31 H 0.111 0.889 32 H 0.073 0.927 33 H 0.090 0.910 34 H 0.087 0.913 35 H 0.108 0.892 36 H 0.100 0.900 37 H 0.081 0.919 38 H 0.111 0.889 39 H 0.111 0.889 40 H 0.092 0.908 41 H 0.062 0.938 42 H 0.117 0.883 43 H 0.069 0.931 44 H 0.144 0.856 45 H 0.195 0.805 46 H 0.200 0.800 47 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges 3.796 11.967 17.177 21.275 hybrid contribution -0.284 -0.435 -0.912 1.049 sum 3.511 11.532 16.265 20.245 Atomic orbital electron populations 1.21961 0.93218 1.02712 1.02275 1.22072 0.95719 0.95624 0.84013 0.89649 1.88034 1.86927 1.36093 1.19970 1.22812 1.01064 0.92580 0.84873 1.22136 0.90566 0.90752 0.93140 0.93704 1.22102 1.03185 0.98055 0.94350 1.21611 0.98093 0.98105 0.98007 1.22167 0.99958 0.98831 0.97760 1.22794 1.00894 0.92695 0.86435 1.87988 1.40720 1.50964 1.52210 1.20113 0.84080 0.87454 0.84523 1.90471 1.57589 1.18780 1.73695 1.41180 1.44314 1.13263 1.15283 1.19381 1.02866 1.28489 0.96831 0.90235 1.25890 0.94269 1.00518 1.00671 1.70163 1.04742 1.31564 1.40738 0.85172 0.77484 0.78390 0.78308 1.20849 1.20574 1.18215 1.18921 0.89071 0.86936 0.94218 1.22216 1.00807 0.93662 1.05220 1.21928 0.96665 0.95845 0.93431 1.22524 0.93677 1.01428 1.01882 1.23251 1.01973 0.86701 0.93628 1.67315 1.14716 1.28482 1.14658 0.93106 0.88889 0.92733 0.90990 0.91261 0.89168 0.89988 0.91881 0.88934 0.88928 0.90781 0.93831 0.88255 0.93089 0.85576 0.80469 0.80013 0.80038 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.84 9.57 71.98 0.69 -5.15 16 2 C 0.09 3.89 2.48 29.85 0.07 3.96 16 3 H 0.09 3.36 4.36 -2.38 -0.01 3.35 16 4 O -0.39 -17.52 9.93 -135.16 -1.34 -18.87 16 5 C 0.06 2.00 5.41 71.98 0.39 2.39 16 6 C 0.09 2.63 2.93 30.63 0.09 2.72 16 7 H 0.04 1.43 8.14 -2.39 -0.02 1.41 16 8 C -0.14 -2.61 5.42 30.69 0.17 -2.44 16 9 C -0.12 -1.87 6.03 30.71 0.19 -1.68 16 10 C -0.15 -2.44 6.14 30.68 0.19 -2.25 16 11 C 0.05 1.12 6.84 72.01 0.49 1.62 16 12 O -0.40 -12.75 10.37 -144.42 -1.50 -14.25 16 13 C 0.45 25.89 5.69 87.66 0.50 26.39 16 14 O -0.53 -35.57 13.53 1.57 0.02 -35.55 16 15 N -0.42 -23.68 2.75 -464.39 -1.28 -24.95 16 16 C -0.35 -21.25 9.45 84.01 0.79 -20.46 16 17 H 0.08 4.79 7.87 -2.91 -0.02 4.77 16 18 C -0.01 -0.42 4.61 84.91 0.39 -0.03 16 19 N -0.83 -52.62 10.19 21.65 0.22 -52.40 16 20 Si 0.98 48.18 29.58 68.60 2.03 50.21 16 21 H -0.28 -14.00 7.11 99.48 0.71 -13.29 16 22 H -0.28 -13.37 7.11 99.48 0.71 -12.67 16 23 H -0.26 -11.64 7.11 99.48 0.71 -10.93 16 24 C 0.33 15.19 5.46 132.90 0.73 15.91 16 25 C -0.20 -6.97 7.48 22.50 0.17 -6.80 16 26 C -0.05 -1.24 10.17 22.44 0.23 -1.01 16 27 C -0.18 -3.63 10.11 22.39 0.23 -3.40 16 28 C 0.10 2.90 11.18 84.66 0.95 3.84 16 29 N -0.54 -22.58 10.36 -192.95 -2.00 -24.58 16 30 H 0.05 2.23 8.12 -2.39 -0.02 2.21 16 31 H 0.09 2.83 8.14 -2.39 -0.02 2.81 16 32 H 0.05 2.40 7.94 -2.38 -0.02 2.38 16 33 H 0.07 2.02 8.08 -2.39 -0.02 2.00 16 34 H 0.07 1.95 8.14 -2.38 -0.02 1.93 16 35 H 0.09 1.41 8.14 -2.39 -0.02 1.39 16 36 H 0.08 1.41 8.14 -2.39 -0.02 1.40 16 37 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 38 H 0.09 1.02 8.14 -2.39 -0.02 1.00 16 39 H 0.09 1.12 8.14 -2.39 -0.02 1.10 16 40 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 41 H 0.04 1.04 8.14 -2.39 -0.02 1.02 16 42 H 0.10 2.09 8.14 -2.39 -0.02 2.07 16 43 H 0.26 15.83 8.32 -92.71 -0.77 15.06 16 44 H 0.13 4.58 7.82 -2.91 -0.02 4.56 16 45 H 0.18 2.51 8.06 -2.91 -0.02 2.49 16 46 H 0.18 1.92 8.06 -2.91 -0.02 1.89 16 47 H 0.18 3.73 8.06 -2.91 -0.02 3.70 16 Total: -1.00 -88.34 383.22 3.36 -84.98 By element: Atomic # 1 Polarization: 20.85 SS G_CDS: 0.95 Total: 21.80 kcal Atomic # 6 Polarization: 7.35 SS G_CDS: 6.25 Total: 13.60 kcal Atomic # 7 Polarization: -98.87 SS G_CDS: -3.06 Total: -101.93 kcal Atomic # 8 Polarization: -65.85 SS G_CDS: -2.82 Total: -68.67 kcal Atomic # 14 Polarization: 48.18 SS G_CDS: 2.03 Total: 50.21 kcal Total: -88.34 3.36 -84.98 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000892464909.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.612 kcal (2) G-P(sol) polarization free energy of solvation -88.344 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.732 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.361 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.983 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.371 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds