Wall clock time and date at job start Tue Mar 31 2020 18:39:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46497 * 109.46943 * 2 1 4 4 C 1.46501 * 120.00323 * 261.96746 * 3 2 1 5 5 C 1.52998 * 109.47354 * 270.00525 * 4 3 2 6 6 C 1.53002 * 109.47100 * 64.99440 * 5 4 3 7 7 C 1.52996 * 109.47313 * 184.99581 * 5 4 3 8 8 C 1.34773 * 119.99970 * 81.96849 * 3 2 1 9 9 O 1.21364 * 120.00293 * 181.62018 * 8 3 2 10 10 C 1.49351 * 120.00171 * 1.62959 * 8 3 2 11 11 O 1.21374 * 120.00088 * 2.68979 * 10 8 3 12 12 N 1.34774 * 120.00250 * 182.69672 * 10 8 3 13 13 C 1.39727 * 120.00124 * 176.38513 * 12 10 8 14 14 C 1.39018 * 120.03996 * 36.02466 * 13 12 10 15 15 C 1.38136 * 120.06215 * 180.02562 * 14 13 12 16 16 C 1.38185 * 120.14661 * 359.72073 * 15 14 13 17 17 C 1.38924 * 120.07593 * 0.55320 * 16 15 14 18 18 O 1.35751 * 120.02841 * 179.71777 * 17 16 15 19 19 C 1.34830 * 117.00002 * 173.73459 * 18 17 16 20 20 H 1.08010 * 119.99867 * 5.16639 * 19 18 17 21 21 C 1.38650 * 120.00354 * 185.17519 * 19 18 17 22 22 N 1.31562 * 119.99734 * 359.97438 * 21 19 18 23 23 Si 1.86797 * 120.00359 * 179.97438 * 21 19 18 24 24 H 1.48503 * 109.46857 * 90.00138 * 23 21 19 25 25 H 1.48492 * 109.47154 * 209.99943 * 23 21 19 26 26 H 1.48501 * 109.47311 * 330.00360 * 23 21 19 27 27 C 1.38756 * 119.93661 * 359.44928 * 17 16 15 28 28 H 1.09007 * 109.47336 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.47571 * 299.99887 * 1 2 3 30 30 H 1.09001 * 109.47147 * 59.99950 * 1 2 3 31 31 H 1.09000 * 109.47114 * 240.00251 * 2 1 3 32 32 H 1.09001 * 109.47147 * 120.00050 * 2 1 3 33 33 H 1.09003 * 109.46833 * 30.00270 * 4 3 2 34 34 H 1.08996 * 109.47275 * 149.99964 * 4 3 2 35 35 H 1.09002 * 109.46768 * 304.99954 * 5 4 3 36 36 H 1.09001 * 109.47445 * 299.99817 * 6 5 4 37 37 H 1.08998 * 109.47199 * 60.00967 * 6 5 4 38 38 H 1.09000 * 109.46795 * 180.02562 * 6 5 4 39 39 H 1.09005 * 109.46903 * 60.00130 * 7 5 4 40 40 H 1.09000 * 109.47161 * 179.97438 * 7 5 4 41 41 H 1.08993 * 109.47402 * 300.00141 * 7 5 4 42 42 H 0.97005 * 120.00342 * 356.38580 * 12 10 8 43 43 H 1.08005 * 119.97265 * 359.97438 * 14 13 12 44 44 H 1.08001 * 119.93395 * 179.97438 * 15 14 13 45 45 H 1.07998 * 119.96299 * 180.27297 * 16 15 14 46 46 H 0.96996 * 120.00199 * 179.97438 * 22 21 19 47 47 H 1.08002 * 120.06842 * 180.25287 * 27 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0182 1.3812 0.0000 4 6 2.4296 2.0128 -1.2562 5 6 3.9194 1.7565 -1.4921 6 6 4.1530 0.2583 -1.6967 7 6 4.3772 2.5188 -2.7372 8 6 2.0891 2.0709 1.1557 9 8 2.4657 3.2246 1.1518 10 6 1.7044 1.4154 2.4413 11 8 1.3746 0.2473 2.4521 12 7 1.7231 2.1208 3.5896 13 6 1.2913 1.5299 4.7798 14 6 1.5457 0.1847 5.0212 15 6 1.1185 -0.4002 6.1975 16 6 0.4424 0.3506 7.1401 17 6 0.1799 1.6940 6.9026 18 8 -0.4895 2.4292 7.8268 19 6 -0.5978 3.7529 7.5944 20 1 -0.2358 4.1696 6.6660 21 6 -1.1738 4.5792 8.5473 22 7 -1.6150 4.0716 9.6779 23 14 -1.3232 6.4132 8.2256 24 1 -2.6196 6.6946 7.5582 25 1 -1.2600 7.1485 9.5142 26 1 -0.2090 6.8544 7.3487 27 6 0.6074 2.2848 5.7221 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 1.8535 1.5916 -2.0803 34 1 2.2501 3.0864 -1.1990 35 1 4.4881 2.0981 -0.6273 36 1 3.8269 -0.2848 -0.8097 37 1 3.5843 -0.0833 -2.5615 38 1 5.2145 0.0758 -1.8643 39 1 4.2107 3.5861 -2.5914 40 1 5.4386 2.3365 -2.9049 41 1 3.8084 2.1772 -3.6019 42 1 2.0364 3.0389 3.5898 43 1 2.0772 -0.4040 4.2880 44 1 1.3170 -1.4455 6.3827 45 1 0.1136 -0.1086 8.0607 46 1 -2.0176 4.6496 10.3447 47 1 0.4081 3.3300 5.5370 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000918436245.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:39:09 Heat of formation + Delta-G solvation = -61.984448 kcal Electronic energy + Delta-G solvation = -28853.322186 eV Core-core repulsion = 24809.606516 eV Total energy + Delta-G solvation = -4043.715670 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.18336 -39.51799 -38.48324 -37.27617 -36.55529 -35.00471 -34.07825 -32.26493 -30.72639 -29.57131 -28.78542 -27.57674 -27.29909 -25.39870 -24.55603 -23.20758 -21.90289 -21.41007 -20.57719 -19.69826 -18.13171 -17.98192 -17.29353 -16.84096 -16.30199 -15.79951 -15.56277 -15.18116 -15.02294 -14.85294 -14.42070 -14.24810 -14.11541 -13.78782 -13.66891 -13.47364 -13.26081 -13.03761 -12.83400 -12.58506 -12.46688 -12.41549 -12.05420 -11.80068 -11.72006 -11.61705 -11.52663 -11.24008 -11.14491 -11.07874 -10.95228 -10.90639 -10.81716 -10.46366 -9.84085 -9.54566 -9.28087 -8.96880 -8.83729 -7.84095 -7.24285 -6.47268 -4.07287 1.21996 2.04696 2.24472 2.37006 3.11404 3.12934 3.17194 3.18553 3.38233 3.94871 4.24741 4.48122 4.51815 4.54708 4.66509 4.83053 5.03734 5.06410 5.13372 5.23488 5.23713 5.28689 5.33107 5.42332 5.49008 5.52377 5.59695 5.62045 5.74926 5.79187 5.90938 5.92143 5.93110 5.98687 6.08174 6.16866 6.21050 6.24293 6.54281 6.74446 6.87679 6.92309 7.06377 7.22675 7.36304 7.41032 7.67122 7.72698 7.96165 8.03677 8.98102 9.66538 10.70451 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.015881 B = 0.002664 C = 0.002409 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1762.655990 B =10506.886205 C =11620.348767 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.085 3.915 3 N -0.581 5.581 4 C 0.116 3.884 5 C -0.114 4.114 6 C -0.151 4.151 7 C -0.144 4.144 8 C 0.509 3.491 9 O -0.520 6.520 10 C 0.503 3.497 11 O -0.494 6.494 12 N -0.636 5.636 13 C 0.171 3.829 14 C -0.202 4.202 15 C -0.065 4.065 16 C -0.194 4.194 17 C 0.167 3.833 18 O -0.174 6.174 19 C -0.393 4.393 20 H 0.091 0.909 21 C 0.041 3.959 22 N -0.861 5.861 23 Si 0.940 3.060 24 H -0.273 1.273 25 H -0.277 1.277 26 H -0.267 1.267 27 C -0.249 4.249 28 H 0.068 0.932 29 H 0.060 0.940 30 H 0.048 0.952 31 H 0.077 0.923 32 H 0.117 0.883 33 H 0.082 0.918 34 H 0.087 0.913 35 H 0.075 0.925 36 H 0.060 0.940 37 H 0.055 0.945 38 H 0.055 0.945 39 H 0.057 0.943 40 H 0.058 0.942 41 H 0.055 0.945 42 H 0.418 0.582 43 H 0.123 0.877 44 H 0.117 0.883 45 H 0.120 0.880 46 H 0.270 0.730 47 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.086 -6.462 -22.353 24.979 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.036 4.036 3 N -0.314 5.314 4 C -0.006 4.006 5 C -0.133 4.133 6 C -0.208 4.208 7 C -0.202 4.202 8 C 0.291 3.709 9 O -0.396 6.396 10 C 0.285 3.715 11 O -0.370 6.370 12 N -0.281 5.281 13 C 0.078 3.922 14 C -0.222 4.222 15 C -0.084 4.084 16 C -0.214 4.214 17 C 0.112 3.888 18 O -0.077 6.077 19 C -0.470 4.470 20 H 0.108 0.892 21 C -0.164 4.164 22 N -0.496 5.496 23 Si 0.765 3.235 24 H -0.199 1.199 25 H -0.202 1.202 26 H -0.191 1.191 27 C -0.271 4.271 28 H 0.087 0.913 29 H 0.079 0.921 30 H 0.068 0.932 31 H 0.095 0.905 32 H 0.135 0.865 33 H 0.100 0.900 34 H 0.105 0.895 35 H 0.093 0.907 36 H 0.079 0.921 37 H 0.074 0.926 38 H 0.074 0.926 39 H 0.077 0.923 40 H 0.077 0.923 41 H 0.075 0.925 42 H 0.255 0.745 43 H 0.141 0.859 44 H 0.135 0.865 45 H 0.138 0.862 46 H 0.080 0.920 47 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 8.811 -6.633 -21.964 24.578 hybrid contribution -0.014 1.448 -0.273 1.474 sum 8.797 -5.185 -22.238 24.470 Atomic orbital electron populations 1.22097 0.95390 1.02579 1.01896 1.22331 0.95210 0.81073 1.05012 1.47845 1.62375 1.14931 1.06252 1.21706 0.94718 0.99560 0.84631 1.21508 0.96095 0.96414 0.99285 1.21958 1.01699 0.95364 1.01799 1.21759 1.01301 1.00246 0.96869 1.20110 0.79341 0.86260 0.85173 1.90764 1.45774 1.16465 1.86591 1.20066 0.79444 0.87023 0.84935 1.90663 1.45169 1.15311 1.85814 1.43155 1.61679 1.17336 1.05952 1.17399 0.97049 0.93051 0.84661 1.20620 1.08463 0.93841 0.99288 1.20542 0.96664 0.98478 0.92678 1.20312 1.07155 0.92446 1.01464 1.19061 0.89927 0.91422 0.88360 1.84007 1.62189 1.20548 1.40984 1.21294 1.41789 0.79626 1.04254 0.89153 1.25278 0.96231 1.00260 0.94623 1.70035 1.36789 1.36200 1.06565 0.85726 0.79094 0.80525 0.78197 1.19874 1.20209 1.19150 1.20858 1.08081 1.01619 0.96496 0.91299 0.92051 0.93241 0.90497 0.86509 0.90007 0.89474 0.90678 0.92139 0.92620 0.92624 0.92342 0.92331 0.92546 0.74508 0.85943 0.86457 0.86245 0.91972 0.85055 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.58 9.71 37.16 0.36 -1.22 16 2 C 0.09 0.79 4.53 -4.05 -0.02 0.78 16 3 N -0.58 -6.11 2.32 -174.24 -0.40 -6.51 16 4 C 0.12 0.98 4.87 -4.04 -0.02 0.96 16 5 C -0.11 -0.88 3.13 -90.62 -0.28 -1.16 16 6 C -0.15 -1.01 8.18 37.16 0.30 -0.71 16 7 C -0.14 -0.90 9.19 37.16 0.34 -0.55 16 8 C 0.51 6.84 7.66 -11.63 -0.09 6.75 16 9 O -0.52 -7.92 16.05 5.48 0.09 -7.84 16 10 C 0.50 7.50 7.30 -11.63 -0.08 7.41 16 11 O -0.49 -7.64 9.43 5.48 0.05 -7.58 16 12 N -0.64 -10.15 5.32 -10.31 -0.05 -10.20 16 13 C 0.17 3.21 6.27 -83.77 -0.53 2.69 16 14 C -0.20 -3.65 8.68 -39.33 -0.34 -4.00 16 15 C -0.06 -1.16 10.03 -39.64 -0.40 -1.56 16 16 C -0.19 -4.04 9.99 -39.35 -0.39 -4.43 16 17 C 0.17 3.97 6.64 -39.14 -0.26 3.71 16 18 O -0.17 -4.89 9.76 0.05 0.00 -4.89 16 19 C -0.39 -10.85 9.49 30.88 0.29 -10.56 16 20 H 0.09 2.30 5.21 -52.48 -0.27 2.03 16 21 C 0.04 1.11 5.49 -17.51 -0.10 1.01 16 22 N -0.86 -25.03 13.67 55.48 0.76 -24.27 16 23 Si 0.94 20.42 29.55 -169.99 -5.02 15.39 16 24 H -0.27 -5.81 7.11 56.52 0.40 -5.41 16 25 H -0.28 -5.89 7.11 56.52 0.40 -5.49 16 26 H -0.27 -5.58 7.11 56.52 0.40 -5.18 16 27 C -0.25 -5.35 9.08 -39.19 -0.36 -5.70 16 28 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 29 H 0.06 0.77 6.90 -51.93 -0.36 0.41 16 30 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.08 0.54 6.36 -51.93 -0.33 0.21 16 32 H 0.12 1.28 5.39 -51.93 -0.28 1.00 16 33 H 0.08 0.53 8.07 -51.93 -0.42 0.12 16 34 H 0.09 0.84 7.40 -51.93 -0.38 0.45 16 35 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 36 H 0.06 0.45 6.04 -51.93 -0.31 0.14 16 37 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 38 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 39 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 40 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 41 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 42 H 0.42 6.10 8.30 -40.82 -0.34 5.76 16 43 H 0.12 2.09 6.32 -52.48 -0.33 1.76 16 44 H 0.12 1.72 8.06 -52.49 -0.42 1.30 16 45 H 0.12 2.37 8.06 -52.49 -0.42 1.95 16 46 H 0.27 7.21 8.31 -40.82 -0.34 6.87 16 47 H 0.13 2.81 5.64 -52.49 -0.30 2.52 16 LS Contribution 382.87 15.07 5.77 5.77 Total: -1.00 -31.14 382.87 -7.07 -38.21 By element: Atomic # 1 Polarization: 15.18 SS G_CDS: -6.69 Total: 8.49 kcal Atomic # 6 Polarization: -5.00 SS G_CDS: -1.57 Total: -6.57 kcal Atomic # 7 Polarization: -41.28 SS G_CDS: 0.30 Total: -40.98 kcal Atomic # 8 Polarization: -20.45 SS G_CDS: 0.14 Total: -20.31 kcal Atomic # 14 Polarization: 20.42 SS G_CDS: -5.02 Total: 15.39 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -31.14 -7.07 -38.21 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000918436245.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.777 kcal (2) G-P(sol) polarization free energy of solvation -31.140 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.917 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.067 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.207 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.984 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds