Wall clock time and date at job start Tue Mar 31 2020 18:39:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46497 * 109.46943 * 2 1 4 4 C 1.46501 * 120.00323 * 261.96746 * 3 2 1 5 5 C 1.52998 * 109.47354 * 270.00525 * 4 3 2 6 6 C 1.53002 * 109.47100 * 64.99440 * 5 4 3 7 7 C 1.52996 * 109.47313 * 184.99581 * 5 4 3 8 8 C 1.34773 * 119.99970 * 81.96849 * 3 2 1 9 9 O 1.21364 * 120.00293 * 181.62018 * 8 3 2 10 10 C 1.49351 * 120.00171 * 1.62959 * 8 3 2 11 11 O 1.21374 * 120.00088 * 2.68979 * 10 8 3 12 12 N 1.34774 * 120.00250 * 182.69672 * 10 8 3 13 13 C 1.39727 * 120.00124 * 176.38513 * 12 10 8 14 14 C 1.39018 * 120.03996 * 36.02466 * 13 12 10 15 15 C 1.38136 * 120.06215 * 180.02562 * 14 13 12 16 16 C 1.38185 * 120.14661 * 359.72073 * 15 14 13 17 17 C 1.38924 * 120.07593 * 0.55320 * 16 15 14 18 18 O 1.35751 * 120.02841 * 179.71777 * 17 16 15 19 19 C 1.34830 * 117.00002 * 173.73459 * 18 17 16 20 20 H 1.08010 * 119.99867 * 5.16639 * 19 18 17 21 21 C 1.38650 * 120.00354 * 185.17519 * 19 18 17 22 22 N 1.31562 * 119.99734 * 359.97438 * 21 19 18 23 23 Si 1.86797 * 120.00359 * 179.97438 * 21 19 18 24 24 H 1.48503 * 109.46857 * 90.00138 * 23 21 19 25 25 H 1.48492 * 109.47154 * 209.99943 * 23 21 19 26 26 H 1.48501 * 109.47311 * 330.00360 * 23 21 19 27 27 C 1.38756 * 119.93661 * 359.44928 * 17 16 15 28 28 H 1.09007 * 109.47336 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.47571 * 299.99887 * 1 2 3 30 30 H 1.09001 * 109.47147 * 59.99950 * 1 2 3 31 31 H 1.09000 * 109.47114 * 240.00251 * 2 1 3 32 32 H 1.09001 * 109.47147 * 120.00050 * 2 1 3 33 33 H 1.09003 * 109.46833 * 30.00270 * 4 3 2 34 34 H 1.08996 * 109.47275 * 149.99964 * 4 3 2 35 35 H 1.09002 * 109.46768 * 304.99954 * 5 4 3 36 36 H 1.09001 * 109.47445 * 299.99817 * 6 5 4 37 37 H 1.08998 * 109.47199 * 60.00967 * 6 5 4 38 38 H 1.09000 * 109.46795 * 180.02562 * 6 5 4 39 39 H 1.09005 * 109.46903 * 60.00130 * 7 5 4 40 40 H 1.09000 * 109.47161 * 179.97438 * 7 5 4 41 41 H 1.08993 * 109.47402 * 300.00141 * 7 5 4 42 42 H 0.97005 * 120.00342 * 356.38580 * 12 10 8 43 43 H 1.08005 * 119.97265 * 359.97438 * 14 13 12 44 44 H 1.08001 * 119.93395 * 179.97438 * 15 14 13 45 45 H 1.07998 * 119.96299 * 180.27297 * 16 15 14 46 46 H 0.96996 * 120.00199 * 179.97438 * 22 21 19 47 47 H 1.08002 * 120.06842 * 180.25287 * 27 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0182 1.3812 0.0000 4 6 2.4296 2.0128 -1.2562 5 6 3.9194 1.7565 -1.4921 6 6 4.1530 0.2583 -1.6967 7 6 4.3772 2.5188 -2.7372 8 6 2.0891 2.0709 1.1557 9 8 2.4657 3.2246 1.1518 10 6 1.7044 1.4154 2.4413 11 8 1.3746 0.2473 2.4521 12 7 1.7231 2.1208 3.5896 13 6 1.2913 1.5299 4.7798 14 6 1.5457 0.1847 5.0212 15 6 1.1185 -0.4002 6.1975 16 6 0.4424 0.3506 7.1401 17 6 0.1799 1.6940 6.9026 18 8 -0.4895 2.4292 7.8268 19 6 -0.5978 3.7529 7.5944 20 1 -0.2358 4.1696 6.6660 21 6 -1.1738 4.5792 8.5473 22 7 -1.6150 4.0716 9.6779 23 14 -1.3232 6.4132 8.2256 24 1 -2.6196 6.6946 7.5582 25 1 -1.2600 7.1485 9.5142 26 1 -0.2090 6.8544 7.3487 27 6 0.6074 2.2848 5.7221 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 1.8535 1.5916 -2.0803 34 1 2.2501 3.0864 -1.1990 35 1 4.4881 2.0981 -0.6273 36 1 3.8269 -0.2848 -0.8097 37 1 3.5843 -0.0833 -2.5615 38 1 5.2145 0.0758 -1.8643 39 1 4.2107 3.5861 -2.5914 40 1 5.4386 2.3365 -2.9049 41 1 3.8084 2.1772 -3.6019 42 1 2.0364 3.0389 3.5898 43 1 2.0772 -0.4040 4.2880 44 1 1.3170 -1.4455 6.3827 45 1 0.1136 -0.1086 8.0607 46 1 -2.0176 4.6496 10.3447 47 1 0.4081 3.3300 5.5370 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000918436245.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:39:09 Heat of formation + Delta-G solvation = -80.917607 kcal Electronic energy + Delta-G solvation = -28854.143190 eV Core-core repulsion = 24809.606516 eV Total energy + Delta-G solvation = -4044.536674 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.34325 -40.94541 -39.93259 -38.33308 -38.00615 -36.03897 -35.20975 -34.24450 -31.52872 -31.13579 -30.41823 -28.24924 -28.07836 -27.31798 -25.60309 -24.21957 -23.54692 -22.63979 -21.57002 -20.79569 -19.81140 -19.35997 -18.69216 -17.98950 -17.34468 -17.03559 -16.89947 -16.69931 -16.14722 -16.10628 -15.78232 -15.58312 -15.50323 -15.10697 -14.83254 -14.58700 -14.55574 -14.18848 -13.82779 -13.60444 -13.57763 -13.28314 -13.19018 -13.07586 -12.92026 -12.74463 -12.60057 -12.46590 -12.37505 -12.25315 -12.13303 -11.95297 -11.79287 -11.61305 -11.43198 -11.27372 -10.76585 -10.42038 -9.87030 -9.42163 -8.95367 -8.47999 -6.16711 -0.02691 0.58215 0.69825 1.16577 1.35003 1.43533 1.51774 2.00231 2.16526 2.31581 2.80301 3.08784 3.16433 3.47701 3.85268 3.91959 4.03280 4.08027 4.16178 4.29451 4.35783 4.39050 4.44739 4.53669 4.58779 4.63292 4.64536 4.75534 4.78746 4.85582 4.98458 5.00604 5.01647 5.07475 5.09499 5.19993 5.25384 5.29720 5.32821 5.40374 5.41854 5.49887 5.62396 5.64682 5.87716 6.00077 6.08389 6.18287 6.56655 6.79755 6.96558 7.74971 8.74638 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.015881 B = 0.002664 C = 0.002409 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1762.655990 B =10506.886205 C =11620.348767 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.085 3.915 3 N -0.568 5.568 4 C 0.112 3.888 5 C -0.110 4.110 6 C -0.149 4.149 7 C -0.141 4.141 8 C 0.508 3.492 9 O -0.544 6.544 10 C 0.504 3.496 11 O -0.497 6.497 12 N -0.638 5.638 13 C 0.177 3.823 14 C -0.189 4.189 15 C -0.049 4.049 16 C -0.205 4.205 17 C 0.133 3.867 18 O -0.224 6.224 19 C -0.414 4.414 20 H 0.100 0.900 21 C -0.019 4.019 22 N -0.917 5.917 23 Si 1.015 2.985 24 H -0.264 1.264 25 H -0.270 1.270 26 H -0.254 1.254 27 C -0.257 4.257 28 H 0.080 0.920 29 H 0.029 0.971 30 H 0.062 0.938 31 H 0.110 0.890 32 H 0.103 0.897 33 H 0.111 0.889 34 H 0.074 0.926 35 H 0.048 0.952 36 H 0.052 0.948 37 H 0.073 0.927 38 H 0.058 0.942 39 H 0.051 0.949 40 H 0.062 0.938 41 H 0.072 0.928 42 H 0.423 0.577 43 H 0.143 0.857 44 H 0.161 0.839 45 H 0.122 0.878 46 H 0.273 0.727 47 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.226 -7.594 -25.890 28.854 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.036 4.036 3 N -0.300 5.300 4 C -0.009 4.009 5 C -0.130 4.130 6 C -0.206 4.206 7 C -0.198 4.198 8 C 0.290 3.710 9 O -0.422 6.422 10 C 0.287 3.713 11 O -0.372 6.372 12 N -0.284 5.284 13 C 0.084 3.916 14 C -0.209 4.209 15 C -0.068 4.068 16 C -0.225 4.225 17 C 0.082 3.918 18 O -0.130 6.130 19 C -0.490 4.490 20 H 0.117 0.883 21 C -0.217 4.217 22 N -0.555 5.555 23 Si 0.834 3.166 24 H -0.189 1.189 25 H -0.195 1.195 26 H -0.177 1.177 27 C -0.278 4.278 28 H 0.099 0.901 29 H 0.048 0.952 30 H 0.081 0.919 31 H 0.128 0.872 32 H 0.121 0.879 33 H 0.130 0.870 34 H 0.093 0.907 35 H 0.067 0.933 36 H 0.071 0.929 37 H 0.092 0.908 38 H 0.077 0.923 39 H 0.070 0.930 40 H 0.081 0.919 41 H 0.091 0.909 42 H 0.261 0.739 43 H 0.160 0.840 44 H 0.178 0.822 45 H 0.140 0.860 46 H 0.082 0.918 47 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 9.981 -7.818 -25.581 28.551 hybrid contribution -0.229 1.515 0.570 1.635 sum 9.752 -6.303 -25.011 27.576 Atomic orbital electron populations 1.22069 0.95495 1.03120 1.00954 1.22412 0.94965 0.80245 1.05960 1.47975 1.60781 1.15246 1.05971 1.21941 0.95778 0.99001 0.84177 1.21457 0.94992 0.97527 0.99008 1.21943 1.02298 0.94141 1.02180 1.21734 1.01814 0.99670 0.96615 1.19829 0.79712 0.86072 0.85352 1.90761 1.47323 1.17343 1.86785 1.20408 0.78807 0.86931 0.85131 1.90663 1.45003 1.15504 1.86045 1.43153 1.61936 1.17820 1.05534 1.17429 0.95903 0.93291 0.85024 1.20990 1.06997 0.93489 0.99443 1.20982 0.94328 1.00141 0.91305 1.20576 1.07717 0.91614 1.02570 1.19600 0.90908 0.92517 0.88804 1.83973 1.64911 1.21021 1.43129 1.21768 1.42138 0.80144 1.04947 0.88263 1.26524 0.95600 1.05441 0.94166 1.70172 1.39056 1.38229 1.08031 0.84638 0.79617 0.73841 0.78476 1.18940 1.19468 1.17744 1.20853 1.08684 1.01611 0.96657 0.90072 0.95217 0.91894 0.87210 0.87916 0.87041 0.90738 0.93292 0.92916 0.90758 0.92337 0.92989 0.91934 0.90883 0.73859 0.83978 0.82158 0.85962 0.91774 0.85822 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.69 9.71 71.98 0.70 -1.99 16 2 C 0.09 1.34 4.53 86.38 0.39 1.73 16 3 N -0.57 -10.76 2.32 -823.53 -1.91 -12.67 16 4 C 0.11 1.62 4.87 86.38 0.42 2.04 16 5 C -0.11 -1.46 3.13 -10.79 -0.03 -1.49 16 6 C -0.15 -1.51 8.18 71.98 0.59 -0.92 16 7 C -0.14 -1.41 9.19 71.98 0.66 -0.75 16 8 C 0.51 13.14 7.66 87.24 0.67 13.81 16 9 O -0.54 -16.35 16.05 -3.29 -0.05 -16.40 16 10 C 0.50 14.46 7.30 87.24 0.64 15.09 16 11 O -0.50 -14.45 9.43 -3.32 -0.03 -14.48 16 12 N -0.64 -19.99 5.32 -304.90 -1.62 -21.61 16 13 C 0.18 6.54 6.27 38.20 0.24 6.78 16 14 C -0.19 -6.43 8.68 22.43 0.19 -6.23 16 15 C -0.05 -1.65 10.03 22.23 0.22 -1.43 16 16 C -0.21 -8.56 9.99 22.42 0.22 -8.34 16 17 C 0.13 6.57 6.64 22.56 0.15 6.72 16 18 O -0.22 -13.33 9.76 -22.75 -0.22 -13.55 16 19 C -0.41 -23.95 9.49 67.92 0.64 -23.30 16 20 H 0.10 5.29 5.21 -2.91 -0.02 5.28 16 21 C -0.02 -1.09 5.49 84.83 0.47 -0.63 16 22 N -0.92 -55.90 13.67 21.61 0.30 -55.61 16 23 Si 1.01 42.91 29.55 68.60 2.03 44.94 16 24 H -0.26 -10.69 7.11 99.48 0.71 -9.98 16 25 H -0.27 -10.96 7.11 99.48 0.71 -10.26 16 26 H -0.25 -10.02 7.11 99.48 0.71 -9.31 16 27 C -0.26 -11.28 9.08 22.52 0.20 -11.08 16 28 H 0.08 1.18 8.14 -2.38 -0.02 1.16 16 29 H 0.03 0.69 6.90 -2.38 -0.02 0.67 16 30 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 31 H 0.11 1.06 6.36 -2.39 -0.02 1.05 16 32 H 0.10 1.99 5.39 -2.45 -0.01 1.97 16 33 H 0.11 0.99 8.07 -2.39 -0.02 0.97 16 34 H 0.07 1.32 7.40 -2.39 -0.02 1.30 16 35 H 0.05 0.91 8.14 -2.39 -0.02 0.89 16 36 H 0.05 0.62 6.04 -2.39 -0.01 0.61 16 37 H 0.07 0.50 8.14 -2.39 -0.02 0.48 16 38 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16 39 H 0.05 0.59 8.14 -2.38 -0.02 0.57 16 40 H 0.06 0.59 8.14 -2.39 -0.02 0.57 16 41 H 0.07 0.50 8.14 -2.39 -0.02 0.48 16 42 H 0.42 12.33 8.30 -92.70 -0.77 11.56 16 43 H 0.14 4.37 6.32 -2.91 -0.02 4.35 16 44 H 0.16 4.02 8.06 -2.91 -0.02 4.00 16 45 H 0.12 4.94 8.06 -2.91 -0.02 4.92 16 46 H 0.27 15.25 8.31 -92.71 -0.77 14.48 16 47 H 0.12 5.53 5.64 -2.91 -0.02 5.51 16 Total: -1.00 -71.72 382.87 5.10 -66.62 By element: Atomic # 1 Polarization: 32.50 SS G_CDS: 0.23 Total: 32.74 kcal Atomic # 6 Polarization: -16.37 SS G_CDS: 6.38 Total: -9.99 kcal Atomic # 7 Polarization: -86.65 SS G_CDS: -3.24 Total: -89.89 kcal Atomic # 8 Polarization: -44.12 SS G_CDS: -0.31 Total: -44.43 kcal Atomic # 14 Polarization: 42.91 SS G_CDS: 2.03 Total: 44.94 kcal Total: -71.72 5.10 -66.62 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000918436245.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.295 kcal (2) G-P(sol) polarization free energy of solvation -71.720 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.015 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.098 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.622 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.918 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds