Wall clock time and date at job start Tue Mar 31 2020 18:32:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46499 * 109.47089 * 2 1 4 4 C 1.34768 * 119.99925 * 85.84622 * 3 2 1 5 5 O 1.21289 * 120.00032 * 174.84853 * 4 3 2 6 6 C 1.50698 * 120.00181 * 354.84963 * 4 3 2 7 7 H 1.09002 * 110.01596 * 333.52834 * 6 4 3 8 8 C 1.54262 * 110.03603 * 94.92571 * 6 4 3 9 9 C 1.54886 * 104.19900 * 142.89392 * 8 6 4 10 10 C 1.54895 * 102.74925 * 322.05759 * 9 8 6 11 11 H 1.08997 * 110.48336 * 279.13182 * 10 9 8 12 12 C 1.53001 * 110.48625 * 156.61872 * 10 9 8 13 13 F 1.39897 * 109.46849 * 61.45564 * 12 10 9 14 14 F 1.39902 * 109.46714 * 181.45394 * 12 10 9 15 15 F 1.39899 * 109.47055 * 301.45305 * 12 10 9 16 16 C 1.53886 * 110.03057 * 212.14192 * 6 4 3 17 17 C 1.46498 * 119.99632 * 265.56857 * 3 2 1 18 18 C 1.53951 * 113.74535 * 36.95258 * 17 3 2 19 19 N 1.47582 * 86.11521 * 222.04650 * 18 17 3 20 20 C 1.36938 * 134.48888 * 204.63519 * 19 18 17 21 21 H 1.07995 * 120.00029 * 180.02562 * 20 19 18 22 22 C 1.38814 * 120.00104 * 0.02562 * 20 19 18 23 23 N 1.31621 * 120.00074 * 359.97438 * 22 20 19 24 24 Si 1.86794 * 120.00150 * 179.97438 * 22 20 19 25 25 H 1.48498 * 109.47162 * 359.97438 * 24 22 20 26 26 H 1.48504 * 109.47364 * 119.99598 * 24 22 20 27 27 H 1.48494 * 109.47339 * 239.99760 * 24 22 20 28 28 C 1.47578 * 91.01937 * 24.63846 * 19 18 17 29 29 H 1.09006 * 109.47596 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.47387 * 300.00089 * 1 2 3 31 31 H 1.08998 * 109.47516 * 60.00128 * 1 2 3 32 32 H 1.08998 * 109.47253 * 239.99372 * 2 1 3 33 33 H 1.09000 * 109.46797 * 119.99987 * 2 1 3 34 34 H 1.08999 * 110.48697 * 261.57713 * 8 6 4 35 35 H 1.09007 * 110.48606 * 24.08287 * 8 6 4 36 36 H 1.08995 * 110.75845 * 80.36988 * 9 8 6 37 37 H 1.08999 * 110.75978 * 203.74445 * 9 8 6 38 38 H 1.08997 * 110.03222 * 359.97438 * 16 6 4 39 39 H 1.08998 * 110.02840 * 121.42756 * 16 6 4 40 40 H 1.09002 * 112.94443 * 168.68610 * 17 3 2 41 41 H 1.09001 * 113.76480 * 336.34706 * 18 17 3 42 42 H 1.08992 * 113.77046 * 107.74191 * 18 17 3 43 43 H 0.96994 * 120.00162 * 180.02562 * 23 22 20 44 44 H 1.08997 * 113.77105 * 221.06245 * 28 19 18 45 45 H 1.09006 * 113.76997 * 89.65502 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1632 2.0447 1.1641 5 8 2.6548 3.1534 1.1730 6 6 1.7144 1.4090 2.4546 7 1 0.9176 0.6913 2.2597 8 6 2.9043 0.7047 3.1386 9 6 2.6776 0.9572 4.6499 10 6 2.1315 2.4065 4.6761 11 1 2.9492 3.1236 4.6033 12 6 1.3195 2.6498 5.9498 13 9 2.1443 2.4837 7.0675 14 9 0.8095 3.9525 5.9360 15 9 0.2622 1.7357 6.0105 16 6 1.2219 2.4910 3.4318 17 6 2.3548 2.0391 -1.2650 18 6 1.4169 1.6649 -2.4270 19 7 2.6365 1.5890 -3.2545 20 6 2.8974 1.7142 -4.5930 21 1 3.9086 1.6117 -4.9579 22 6 1.8620 1.9730 -5.4807 23 7 0.6295 2.0975 -5.0360 24 14 2.2180 2.1445 -7.3063 25 1 3.6722 1.9635 -7.5463 26 1 1.4596 1.1122 -8.0577 27 1 1.8052 3.4947 -7.7664 28 6 3.4620 1.3237 -2.0603 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8899 31 1 -0.3634 0.5138 -0.8900 32 1 1.8933 -0.5139 -0.8899 33 1 1.8932 -0.5138 0.8900 34 1 2.8899 -0.3638 2.9240 35 1 3.8468 1.1455 2.8133 36 1 1.9425 0.2602 5.0520 37 1 3.6171 0.8885 5.1983 38 1 1.3079 3.4758 2.9727 39 1 0.1863 2.2977 3.7116 40 1 2.5156 3.1117 -1.1565 41 1 0.9150 0.7064 -2.2952 42 1 0.7374 2.4658 -2.7184 43 1 -0.0940 2.2779 -5.6563 44 1 4.4153 1.8523 -2.0590 45 1 3.5608 0.2649 -1.8208 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000951551304.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:32:49 Heat of formation + Delta-G solvation = -142.570700 kcal Electronic energy + Delta-G solvation = -30116.861227 eV Core-core repulsion = 25527.794334 eV Total energy + Delta-G solvation = -4589.066893 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.161 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -50.33244 -47.82533 -47.79533 -40.47113 -38.43697 -36.98423 -35.09826 -32.16976 -30.76263 -30.22082 -29.33035 -27.51685 -25.23805 -24.86445 -23.49642 -23.40940 -21.47687 -21.15670 -19.39781 -18.79547 -18.45437 -18.33377 -17.89916 -17.32718 -16.76924 -16.26415 -15.18436 -14.98028 -14.77465 -14.70246 -14.56403 -14.38627 -14.25101 -14.00942 -13.96526 -13.86121 -13.78024 -13.50130 -13.25193 -12.80988 -12.59282 -12.30095 -12.05142 -11.75360 -11.66256 -11.58535 -11.54725 -11.46667 -11.29810 -11.20085 -10.95814 -10.90365 -10.78953 -10.71489 -10.29031 -10.07070 -9.59201 -9.44332 -8.84558 -8.20201 -6.94582 -5.82711 -3.15377 2.50529 2.75026 3.19684 3.36636 3.42130 3.44285 3.51977 3.64237 3.77737 4.22913 4.37905 4.40333 4.47078 4.87072 4.93544 4.97608 5.00627 5.08122 5.14212 5.17075 5.23232 5.32179 5.43010 5.47504 5.51321 5.56478 5.62624 5.74578 5.81766 5.84051 5.90831 5.96033 6.04587 6.16818 6.34612 6.42915 6.56124 6.78381 7.15460 7.30989 7.48386 7.74538 7.91916 8.40835 8.98967 9.64786 10.51608 11.34496 Molecular weight = 334.16amu Principal moments of inertia in cm(-1) A = 0.029735 B = 0.002415 C = 0.002408 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 941.411949 B =11592.155593 C =11627.119598 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.103 3.897 3 N -0.593 5.593 4 C 0.518 3.482 5 O -0.544 6.544 6 C -0.116 4.116 7 H 0.102 0.898 8 C -0.106 4.106 9 C -0.116 4.116 10 C -0.139 4.139 11 H 0.123 0.877 12 C 0.456 3.544 13 F -0.185 7.185 14 F -0.183 7.183 15 F -0.183 7.183 16 C -0.106 4.106 17 C 0.090 3.910 18 C 0.156 3.844 19 N -0.606 5.606 20 C -0.222 4.222 21 H 0.082 0.918 22 C -0.007 4.007 23 N -0.920 5.920 24 Si 0.914 3.086 25 H -0.279 1.279 26 H -0.290 1.290 27 H -0.289 1.289 28 C 0.108 3.892 29 H 0.064 0.936 30 H 0.054 0.946 31 H 0.073 0.927 32 H 0.088 0.912 33 H 0.071 0.929 34 H 0.081 0.919 35 H 0.079 0.921 36 H 0.082 0.918 37 H 0.084 0.916 38 H 0.097 0.903 39 H 0.079 0.921 40 H 0.114 0.886 41 H 0.036 0.964 42 H 0.075 0.925 43 H 0.254 0.746 44 H 0.046 0.954 45 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.461 -5.093 22.554 23.126 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C -0.020 4.020 3 N -0.325 5.325 4 C 0.305 3.695 5 O -0.422 6.422 6 C -0.137 4.137 7 H 0.120 0.880 8 C -0.144 4.144 9 C -0.153 4.153 10 C -0.159 4.159 11 H 0.141 0.859 12 C 0.402 3.598 13 F -0.167 7.167 14 F -0.164 7.164 15 F -0.164 7.164 16 C -0.144 4.144 17 C -0.013 4.013 18 C 0.030 3.970 19 N -0.333 5.333 20 C -0.350 4.350 21 H 0.100 0.900 22 C -0.204 4.204 23 N -0.567 5.567 24 Si 0.744 3.256 25 H -0.204 1.204 26 H -0.217 1.217 27 H -0.216 1.216 28 C -0.019 4.019 29 H 0.083 0.917 30 H 0.073 0.927 31 H 0.092 0.908 32 H 0.106 0.894 33 H 0.089 0.911 34 H 0.100 0.900 35 H 0.097 0.903 36 H 0.101 0.899 37 H 0.102 0.898 38 H 0.115 0.885 39 H 0.098 0.902 40 H 0.131 0.869 41 H 0.054 0.946 42 H 0.094 0.906 43 H 0.064 0.936 44 H 0.064 0.936 45 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges 0.624 -4.439 22.204 22.652 hybrid contribution -0.138 -0.045 -0.857 0.869 sum 0.486 -4.484 21.347 21.818 Atomic orbital electron populations 1.22375 0.95768 1.02269 1.03144 1.21546 0.94649 0.82771 1.03043 1.48182 1.63903 1.13915 1.06473 1.20428 0.78407 0.85677 0.84995 1.90672 1.44574 1.20238 1.86688 1.22039 0.99852 0.98386 0.93464 0.87963 1.22263 0.97817 1.00907 0.93402 1.22571 1.02104 0.93052 0.97594 1.23405 0.99454 1.02219 0.90789 0.85922 1.20570 0.78820 0.73882 0.86502 1.93174 1.72098 1.95238 1.56166 1.93197 1.88164 1.38272 1.96808 1.93159 1.59320 1.67153 1.96770 1.22149 0.98378 1.01245 0.92641 1.24029 0.98713 0.98242 0.80353 1.22712 0.90963 0.99225 0.84135 1.45671 1.03522 1.82530 1.01553 1.19035 0.93815 1.42049 0.80074 0.90028 1.24799 0.95268 1.02076 0.98218 1.69818 0.98748 1.54727 1.33397 0.86021 0.77455 0.77407 0.84719 1.20420 1.21707 1.21622 1.22976 0.95154 0.96845 0.86939 0.91717 0.92724 0.90782 0.89396 0.91079 0.90014 0.90266 0.89894 0.89773 0.88482 0.90195 0.86855 0.94618 0.90647 0.93609 0.93570 0.94788 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.01 9.70 37.16 0.36 -1.65 16 2 C 0.10 1.24 4.79 -4.04 -0.02 1.22 16 3 N -0.59 -8.95 2.70 -167.90 -0.45 -9.40 16 4 C 0.52 7.54 6.52 -10.99 -0.07 7.47 16 5 O -0.54 -9.91 15.30 5.55 0.08 -9.83 16 6 C -0.12 -1.17 2.40 -90.65 -0.22 -1.39 16 7 H 0.10 0.89 5.10 -51.93 -0.26 0.62 16 8 C -0.11 -0.86 6.10 -25.08 -0.15 -1.01 16 9 C -0.12 -0.81 6.11 -24.74 -0.15 -0.96 16 10 C -0.14 -1.18 2.88 -88.90 -0.26 -1.44 16 11 H 0.12 1.02 8.14 -51.93 -0.42 0.60 16 12 C 0.46 4.22 2.69 37.16 0.10 4.32 16 13 F -0.19 -1.76 17.11 2.25 0.04 -1.72 16 14 F -0.18 -1.93 17.16 2.25 0.04 -1.90 16 15 F -0.18 -1.74 15.77 2.25 0.04 -1.70 16 16 C -0.11 -1.05 5.67 -25.55 -0.14 -1.20 16 17 C 0.09 1.74 4.38 -70.14 -0.31 1.43 16 18 C 0.16 3.52 6.45 -2.97 -0.02 3.50 16 19 N -0.61 -15.28 3.70 -178.08 -0.66 -15.94 16 20 C -0.22 -6.16 10.70 -15.06 -0.16 -6.32 16 21 H 0.08 2.19 7.83 -52.49 -0.41 1.78 16 22 C -0.01 -0.19 5.50 -17.43 -0.10 -0.29 16 23 N -0.92 -26.77 11.38 55.49 0.63 -26.14 16 24 Si 0.91 21.91 29.55 -169.99 -5.02 16.88 16 25 H -0.28 -6.49 7.11 56.52 0.40 -6.08 16 26 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 27 H -0.29 -7.00 7.11 56.52 0.40 -6.59 16 28 C 0.11 2.20 8.44 -2.97 -0.03 2.17 16 29 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 30 H 0.05 0.55 6.62 -51.93 -0.34 0.21 16 31 H 0.07 1.05 6.37 -51.93 -0.33 0.71 16 32 H 0.09 1.18 6.19 -51.93 -0.32 0.86 16 33 H 0.07 0.64 6.38 -51.93 -0.33 0.31 16 34 H 0.08 0.52 7.76 -51.93 -0.40 0.12 16 35 H 0.08 0.74 7.85 -51.93 -0.41 0.33 16 36 H 0.08 0.53 7.49 -51.93 -0.39 0.14 16 37 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 38 H 0.10 1.17 6.88 -51.93 -0.36 0.81 16 39 H 0.08 0.72 7.22 -51.93 -0.37 0.34 16 40 H 0.11 2.41 7.28 -51.93 -0.38 2.04 16 41 H 0.04 0.79 5.24 -51.93 -0.27 0.51 16 42 H 0.08 1.94 7.15 -51.93 -0.37 1.57 16 43 H 0.25 7.16 8.31 -40.82 -0.34 6.82 16 44 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 45 H 0.03 0.65 7.02 -51.93 -0.36 0.28 16 LS Contribution 359.58 15.07 5.42 5.42 Total: -1.00 -31.68 359.58 -7.19 -38.87 By element: Atomic # 1 Polarization: 5.74 SS G_CDS: -6.15 Total: -0.40 kcal Atomic # 6 Polarization: 7.02 SS G_CDS: -1.16 Total: 5.86 kcal Atomic # 7 Polarization: -51.00 SS G_CDS: -0.48 Total: -51.48 kcal Atomic # 8 Polarization: -9.91 SS G_CDS: 0.08 Total: -9.83 kcal Atomic # 9 Polarization: -5.43 SS G_CDS: 0.11 Total: -5.32 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -5.02 Total: 16.88 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -31.68 -7.19 -38.87 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000951551304.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -103.699 kcal (2) G-P(sol) polarization free energy of solvation -31.677 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.376 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.195 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.872 kcal (6) G-S(sol) free energy of system = (1) + (5) -142.571 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds