Wall clock time and date at job start Tue Mar 31 2020 18:32:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46499 * 109.47089 * 2 1 4 4 C 1.34768 * 119.99925 * 85.84622 * 3 2 1 5 5 O 1.21289 * 120.00032 * 174.84853 * 4 3 2 6 6 C 1.50698 * 120.00181 * 354.84963 * 4 3 2 7 7 H 1.09002 * 110.01596 * 333.52834 * 6 4 3 8 8 C 1.54262 * 110.03603 * 94.92571 * 6 4 3 9 9 C 1.54886 * 104.19900 * 142.89392 * 8 6 4 10 10 C 1.54895 * 102.74925 * 322.05759 * 9 8 6 11 11 H 1.08997 * 110.48336 * 279.13182 * 10 9 8 12 12 C 1.53001 * 110.48625 * 156.61872 * 10 9 8 13 13 F 1.39897 * 109.46849 * 61.45564 * 12 10 9 14 14 F 1.39902 * 109.46714 * 181.45394 * 12 10 9 15 15 F 1.39899 * 109.47055 * 301.45305 * 12 10 9 16 16 C 1.53886 * 110.03057 * 212.14192 * 6 4 3 17 17 C 1.46498 * 119.99632 * 265.56857 * 3 2 1 18 18 C 1.53951 * 113.74535 * 36.95258 * 17 3 2 19 19 N 1.47582 * 86.11521 * 222.04650 * 18 17 3 20 20 C 1.36938 * 134.48888 * 204.63519 * 19 18 17 21 21 H 1.07995 * 120.00029 * 180.02562 * 20 19 18 22 22 C 1.38814 * 120.00104 * 0.02562 * 20 19 18 23 23 N 1.31621 * 120.00074 * 359.97438 * 22 20 19 24 24 Si 1.86794 * 120.00150 * 179.97438 * 22 20 19 25 25 H 1.48498 * 109.47162 * 359.97438 * 24 22 20 26 26 H 1.48504 * 109.47364 * 119.99598 * 24 22 20 27 27 H 1.48494 * 109.47339 * 239.99760 * 24 22 20 28 28 C 1.47578 * 91.01937 * 24.63846 * 19 18 17 29 29 H 1.09006 * 109.47596 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.47387 * 300.00089 * 1 2 3 31 31 H 1.08998 * 109.47516 * 60.00128 * 1 2 3 32 32 H 1.08998 * 109.47253 * 239.99372 * 2 1 3 33 33 H 1.09000 * 109.46797 * 119.99987 * 2 1 3 34 34 H 1.08999 * 110.48697 * 261.57713 * 8 6 4 35 35 H 1.09007 * 110.48606 * 24.08287 * 8 6 4 36 36 H 1.08995 * 110.75845 * 80.36988 * 9 8 6 37 37 H 1.08999 * 110.75978 * 203.74445 * 9 8 6 38 38 H 1.08997 * 110.03222 * 359.97438 * 16 6 4 39 39 H 1.08998 * 110.02840 * 121.42756 * 16 6 4 40 40 H 1.09002 * 112.94443 * 168.68610 * 17 3 2 41 41 H 1.09001 * 113.76480 * 336.34706 * 18 17 3 42 42 H 1.08992 * 113.77046 * 107.74191 * 18 17 3 43 43 H 0.96994 * 120.00162 * 180.02562 * 23 22 20 44 44 H 1.08997 * 113.77105 * 221.06245 * 28 19 18 45 45 H 1.09006 * 113.76997 * 89.65502 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1632 2.0447 1.1641 5 8 2.6548 3.1534 1.1730 6 6 1.7144 1.4090 2.4546 7 1 0.9176 0.6913 2.2597 8 6 2.9043 0.7047 3.1386 9 6 2.6776 0.9572 4.6499 10 6 2.1315 2.4065 4.6761 11 1 2.9492 3.1236 4.6033 12 6 1.3195 2.6498 5.9498 13 9 2.1443 2.4837 7.0675 14 9 0.8095 3.9525 5.9360 15 9 0.2622 1.7357 6.0105 16 6 1.2219 2.4910 3.4318 17 6 2.3548 2.0391 -1.2650 18 6 1.4169 1.6649 -2.4270 19 7 2.6365 1.5890 -3.2545 20 6 2.8974 1.7142 -4.5930 21 1 3.9086 1.6117 -4.9579 22 6 1.8620 1.9730 -5.4807 23 7 0.6295 2.0975 -5.0360 24 14 2.2180 2.1445 -7.3063 25 1 3.6722 1.9635 -7.5463 26 1 1.4596 1.1122 -8.0577 27 1 1.8052 3.4947 -7.7664 28 6 3.4620 1.3237 -2.0603 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8899 31 1 -0.3634 0.5138 -0.8900 32 1 1.8933 -0.5139 -0.8899 33 1 1.8932 -0.5138 0.8900 34 1 2.8899 -0.3638 2.9240 35 1 3.8468 1.1455 2.8133 36 1 1.9425 0.2602 5.0520 37 1 3.6171 0.8885 5.1983 38 1 1.3079 3.4758 2.9727 39 1 0.1863 2.2977 3.7116 40 1 2.5156 3.1117 -1.1565 41 1 0.9150 0.7064 -2.2952 42 1 0.7374 2.4658 -2.7184 43 1 -0.0940 2.2779 -5.6563 44 1 4.4153 1.8523 -2.0590 45 1 3.5608 0.2649 -1.8208 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000951551304.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:32:48 Heat of formation + Delta-G solvation = -160.848169 kcal Electronic energy + Delta-G solvation = -30117.653797 eV Core-core repulsion = 25527.794334 eV Total energy + Delta-G solvation = -4589.859463 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.161 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -51.07487 -48.56577 -48.55166 -41.64693 -39.78383 -38.08986 -36.43323 -34.14158 -31.63722 -31.35483 -30.05410 -29.33360 -26.63102 -26.18148 -25.03965 -24.41259 -22.68218 -21.83087 -20.73403 -19.66989 -19.54207 -19.13600 -18.99069 -18.59306 -18.15936 -17.51408 -16.87906 -16.18145 -15.96325 -15.74972 -15.51153 -15.35628 -15.21065 -15.01213 -14.82930 -14.74982 -14.67477 -14.54825 -14.31049 -14.16979 -13.82827 -13.62956 -13.34467 -13.20253 -12.90588 -12.85390 -12.59536 -12.45701 -12.41751 -12.38871 -12.16619 -12.03874 -11.97236 -11.93578 -11.78344 -11.60851 -11.49946 -10.89102 -10.67402 -9.55530 -8.95933 -7.93840 -5.27758 1.44962 1.46396 1.56522 1.58755 1.81018 1.98571 2.47636 2.80944 2.92167 3.07660 3.25812 3.39077 3.47848 3.59982 3.65752 3.84165 4.07005 4.20992 4.22552 4.30247 4.30641 4.35241 4.38974 4.44354 4.51874 4.57711 4.61119 4.74801 4.84906 4.87527 4.94695 4.95986 5.04709 5.06150 5.16381 5.19207 5.25065 5.33340 5.45705 5.49127 5.75218 5.89312 6.53966 6.88715 7.21918 7.56516 8.50282 9.23161 Molecular weight = 334.16amu Principal moments of inertia in cm(-1) A = 0.029735 B = 0.002415 C = 0.002408 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 941.411949 B =11592.155593 C =11627.119598 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.099 3.901 3 N -0.593 5.593 4 C 0.515 3.485 5 O -0.587 6.587 6 C -0.107 4.107 7 H 0.126 0.874 8 C -0.103 4.103 9 C -0.108 4.108 10 C -0.137 4.137 11 H 0.120 0.880 12 C 0.458 3.542 13 F -0.186 7.186 14 F -0.194 7.194 15 F -0.182 7.182 16 C -0.108 4.108 17 C 0.115 3.885 18 C 0.163 3.837 19 N -0.638 5.638 20 C -0.234 4.234 21 H 0.085 0.915 22 C -0.065 4.065 23 N -0.951 5.951 24 Si 0.980 3.020 25 H -0.265 1.265 26 H -0.289 1.289 27 H -0.293 1.293 28 C 0.115 3.885 29 H 0.090 0.910 30 H 0.069 0.931 31 H 0.037 0.963 32 H 0.074 0.926 33 H 0.115 0.885 34 H 0.110 0.890 35 H 0.065 0.935 36 H 0.097 0.903 37 H 0.098 0.902 38 H 0.069 0.931 39 H 0.091 0.909 40 H 0.087 0.913 41 H 0.046 0.954 42 H 0.034 0.966 43 H 0.249 0.751 44 H 0.047 0.953 45 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.055 -7.392 24.273 25.395 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.023 4.023 3 N -0.324 5.324 4 C 0.305 3.695 5 O -0.467 6.467 6 C -0.128 4.128 7 H 0.144 0.856 8 C -0.140 4.140 9 C -0.145 4.145 10 C -0.156 4.156 11 H 0.138 0.862 12 C 0.405 3.595 13 F -0.167 7.167 14 F -0.176 7.176 15 F -0.163 7.163 16 C -0.146 4.146 17 C 0.009 3.991 18 C 0.037 3.963 19 N -0.365 5.365 20 C -0.363 4.363 21 H 0.103 0.897 22 C -0.258 4.258 23 N -0.600 5.600 24 Si 0.809 3.191 25 H -0.189 1.189 26 H -0.216 1.216 27 H -0.221 1.221 28 C -0.011 4.011 29 H 0.109 0.891 30 H 0.087 0.913 31 H 0.056 0.944 32 H 0.093 0.907 33 H 0.133 0.867 34 H 0.129 0.871 35 H 0.083 0.917 36 H 0.116 0.884 37 H 0.117 0.883 38 H 0.088 0.912 39 H 0.109 0.891 40 H 0.105 0.895 41 H 0.063 0.937 42 H 0.052 0.948 43 H 0.058 0.942 44 H 0.065 0.935 45 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 1.234 -6.772 23.966 24.935 hybrid contribution -0.322 0.698 -1.308 1.517 sum 0.912 -6.074 22.658 23.475 Atomic orbital electron populations 1.22339 0.95176 1.03627 1.02060 1.21822 0.95122 0.80804 1.04526 1.48165 1.64063 1.15165 1.05042 1.21264 0.77209 0.85080 0.85989 1.90659 1.46379 1.22304 1.87363 1.22098 1.01461 0.98585 0.90647 0.85600 1.22309 0.95907 1.02132 0.93686 1.22601 1.03174 0.91737 0.96993 1.23397 0.98920 1.03701 0.89611 0.86155 1.20645 0.78779 0.73406 0.86715 1.93174 1.72077 1.95196 1.56258 1.93179 1.88348 1.39175 1.96863 1.93158 1.59379 1.67024 1.96787 1.22123 0.99478 0.99823 0.93148 1.23230 0.96887 0.97072 0.81885 1.22561 0.90276 0.98217 0.85280 1.46002 1.05517 1.83052 1.01927 1.19405 0.94048 1.41176 0.81631 0.89739 1.25640 0.95200 1.02525 1.02458 1.70005 0.99449 1.56104 1.34425 0.84983 0.77874 0.76777 0.79512 1.18949 1.21608 1.22061 1.23074 0.94885 0.98199 0.84944 0.89120 0.91251 0.94408 0.90710 0.86693 0.87140 0.91667 0.88427 0.88300 0.91245 0.89059 0.89510 0.93687 0.94778 0.94176 0.93469 0.92175 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.54 9.70 71.98 0.70 -2.84 16 2 C 0.10 2.11 4.79 86.38 0.41 2.52 16 3 N -0.59 -17.32 2.70 -803.51 -2.17 -19.49 16 4 C 0.51 14.50 6.52 87.66 0.57 15.08 16 5 O -0.59 -21.77 15.30 -3.06 -0.05 -21.81 16 6 C -0.11 -1.86 2.40 -10.81 -0.03 -1.89 16 7 H 0.13 1.63 5.10 -2.39 -0.01 1.62 16 8 C -0.10 -1.27 6.10 31.67 0.19 -1.07 16 9 C -0.11 -1.10 6.11 31.89 0.19 -0.91 16 10 C -0.14 -2.05 2.88 -9.68 -0.03 -2.08 16 11 H 0.12 1.87 8.14 -2.39 -0.02 1.85 16 12 C 0.46 7.63 2.69 71.98 0.19 7.83 16 13 F -0.19 -3.15 17.11 44.97 0.77 -2.38 16 14 F -0.19 -3.95 17.16 44.97 0.77 -3.17 16 15 F -0.18 -3.02 15.77 44.97 0.71 -2.31 16 16 C -0.11 -1.97 5.67 31.36 0.18 -1.79 16 17 C 0.11 4.51 4.38 46.75 0.20 4.71 16 18 C 0.16 7.62 6.45 86.48 0.56 8.18 16 19 N -0.64 -32.80 3.70 -717.32 -2.65 -35.45 16 20 C -0.23 -13.18 10.70 84.03 0.90 -12.29 16 21 H 0.08 4.56 7.83 -2.91 -0.02 4.53 16 22 C -0.07 -3.70 5.50 84.86 0.47 -3.24 16 23 N -0.95 -57.13 11.38 21.65 0.25 -56.89 16 24 Si 0.98 45.69 29.55 68.60 2.03 47.71 16 25 H -0.27 -11.61 7.11 99.48 0.71 -10.90 16 26 H -0.29 -13.33 7.11 99.48 0.71 -12.62 16 27 H -0.29 -13.76 7.11 99.48 0.71 -13.05 16 28 C 0.11 4.66 8.44 86.48 0.73 5.39 16 29 H 0.09 1.39 8.14 -2.38 -0.02 1.37 16 30 H 0.07 1.20 6.62 -2.39 -0.02 1.18 16 31 H 0.04 1.05 6.37 -2.39 -0.02 1.03 16 32 H 0.07 1.84 6.19 -2.39 -0.01 1.82 16 33 H 0.12 1.49 6.38 -2.39 -0.02 1.48 16 34 H 0.11 0.79 7.76 -2.39 -0.02 0.77 16 35 H 0.06 1.04 7.85 -2.38 -0.02 1.02 16 36 H 0.10 0.78 7.49 -2.39 -0.02 0.76 16 37 H 0.10 0.79 8.14 -2.39 -0.02 0.77 16 38 H 0.07 1.69 6.88 -2.39 -0.02 1.67 16 39 H 0.09 1.45 7.22 -2.39 -0.02 1.43 16 40 H 0.09 3.89 7.28 -2.39 -0.02 3.88 16 41 H 0.05 2.02 5.24 -2.39 -0.01 2.01 16 42 H 0.03 1.86 7.15 -2.39 -0.02 1.84 16 43 H 0.25 14.51 8.31 -92.71 -0.77 13.74 16 44 H 0.05 1.89 8.14 -2.39 -0.02 1.87 16 45 H 0.06 2.16 7.02 -2.38 -0.02 2.15 16 Total: -1.00 -71.89 359.58 5.93 -65.97 By element: Atomic # 1 Polarization: 9.21 SS G_CDS: 1.02 Total: 10.23 kcal Atomic # 6 Polarization: 12.35 SS G_CDS: 5.25 Total: 17.59 kcal Atomic # 7 Polarization: -107.25 SS G_CDS: -4.57 Total: -111.83 kcal Atomic # 8 Polarization: -21.77 SS G_CDS: -0.05 Total: -21.81 kcal Atomic # 9 Polarization: -10.11 SS G_CDS: 2.25 Total: -7.86 kcal Atomic # 14 Polarization: 45.69 SS G_CDS: 2.03 Total: 47.71 kcal Total: -71.89 5.93 -65.97 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000951551304.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -94.883 kcal (2) G-P(sol) polarization free energy of solvation -71.894 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -166.777 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.929 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.965 kcal (6) G-S(sol) free energy of system = (1) + (5) -160.848 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds