Wall clock time and date at job start Tue Mar 31 2020 18:32:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46496 * 109.47406 * 2 1 4 4 C 1.34783 * 119.99945 * 252.58734 * 3 2 1 5 5 O 1.21619 * 119.99721 * 180.24186 * 4 3 2 6 6 C 1.47294 * 119.99727 * 0.23467 * 4 3 2 7 7 C 1.39863 * 120.13761 * 28.10426 * 6 4 3 8 8 C 1.37543 * 119.96000 * 179.76131 * 7 6 4 9 9 C 1.39178 * 120.24317 * 0.52133 * 8 7 6 10 10 O 1.35719 * 119.86365 * 179.71384 * 9 8 7 11 11 C 1.42903 * 116.99677 * 0.02562 * 10 9 8 12 12 C 1.38689 * 120.27594 * 359.73738 * 9 8 7 13 13 C 1.38436 * 120.02794 * 359.97438 * 12 9 8 14 14 O 1.35668 * 120.11808 * 179.97438 * 13 12 9 15 15 C 1.42897 * 116.99947 * 0.02562 * 14 13 12 16 16 C 1.46502 * 120.00142 * 72.58108 * 3 2 1 17 17 C 1.53492 * 114.20508 * 120.00343 * 16 3 2 18 18 N 1.47069 * 87.98612 * 87.52047 * 17 16 3 19 19 C 1.36936 * 136.05685 * 207.08250 * 18 17 16 20 20 H 1.08003 * 120.00123 * 9.15853 * 19 18 17 21 21 C 1.38805 * 120.00232 * 189.15825 * 19 18 17 22 22 N 1.31616 * 120.00367 * 194.05630 * 21 19 18 23 23 Si 1.86805 * 119.99981 * 14.04750 * 21 19 18 24 24 H 1.48497 * 109.47498 * 270.00589 * 23 21 19 25 25 H 1.48505 * 109.46678 * 30.00372 * 23 21 19 26 26 H 1.48499 * 109.47110 * 149.99932 * 23 21 19 27 27 C 1.47066 * 87.88364 * 27.34183 * 18 17 16 28 28 H 1.09001 * 109.46825 * 60.00045 * 1 2 3 29 29 H 1.08994 * 109.47377 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.47192 * 300.00420 * 1 2 3 31 31 H 1.08997 * 109.47192 * 239.99580 * 2 1 3 32 32 H 1.09001 * 109.46825 * 119.99955 * 2 1 3 33 33 H 1.07999 * 120.01413 * 0.02562 * 7 6 4 34 34 H 1.08003 * 119.87289 * 180.25628 * 8 7 6 35 35 H 1.09003 * 109.46900 * 179.97438 * 11 10 9 36 36 H 1.09000 * 109.47005 * 299.99096 * 11 10 9 37 37 H 1.08994 * 109.47647 * 60.00040 * 11 10 9 38 38 H 1.07995 * 119.98258 * 180.02562 * 12 9 8 39 39 H 1.08999 * 109.46949 * 59.99659 * 15 14 13 40 40 H 1.08992 * 109.46986 * 180.02562 * 15 14 13 41 41 H 1.09000 * 109.46985 * 300.00061 * 15 14 13 42 42 H 1.09002 * 113.28003 * 346.93567 * 16 3 2 43 43 H 1.09000 * 113.47152 * 332.74002 * 17 16 3 44 44 H 1.09004 * 113.47043 * 202.29880 * 17 16 3 45 45 H 0.97001 * 119.99614 * 354.92395 * 22 21 19 46 46 H 1.08999 * 113.46767 * 87.43742 * 27 18 17 47 47 H 1.09004 * 113.46613 * 217.87765 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.5724 1.9001 -1.1138 5 8 2.9818 3.0453 -1.1124 6 6 2.6820 1.0801 -2.3324 7 6 1.7615 0.0552 -2.5744 8 6 1.8644 -0.7050 -3.7160 9 6 2.8885 -0.4658 -4.6276 10 8 2.9861 -1.2245 -5.7487 11 6 2.0048 -2.2478 -5.9270 12 6 3.8099 0.5444 -4.3950 13 6 3.7135 1.3203 -3.2526 14 8 4.6141 2.3086 -3.0230 15 6 5.6372 2.4945 -4.0031 16 6 1.9046 2.1984 1.2105 17 6 3.2472 2.7005 1.7595 18 7 3.1184 3.8624 0.8671 19 6 3.9783 4.7256 0.2420 20 1 5.0401 4.5284 0.2473 21 6 3.4852 5.8541 -0.3984 22 7 4.2542 6.5305 -1.2250 23 14 1.7300 6.4127 -0.0871 24 1 0.8228 5.7641 -1.0677 25 1 1.3256 6.0300 1.2896 26 1 1.6463 7.8878 -0.2356 27 6 1.6597 3.6933 0.9469 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8899 31 1 1.8934 -0.5139 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 0.9680 -0.1362 -1.8673 34 1 1.1504 -1.4934 -3.9035 35 1 2.1976 -2.7775 -6.8600 36 1 2.0553 -2.9487 -5.0938 37 1 1.0128 -1.7976 -5.9636 38 1 4.6023 0.7262 -5.1058 39 1 5.1809 2.7316 -4.9642 40 1 6.2883 3.3135 -3.6977 41 1 6.2230 1.5799 -4.0948 42 1 1.2482 1.7630 1.9641 43 1 4.0876 2.0527 1.5102 44 1 3.2138 2.9601 2.8176 45 1 5.1866 6.2847 -1.3309 46 1 1.2078 4.2145 1.7908 47 1 1.1477 3.8913 0.0052 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000957320393.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:32:28 Heat of formation + Delta-G solvation = 65.289990 kcal Electronic energy + Delta-G solvation = -31168.837684 eV Core-core repulsion = 27130.641047 eV Total energy + Delta-G solvation = -4038.196637 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -40.80615 -39.72624 -38.83846 -37.16892 -35.88807 -35.07962 -31.98939 -30.81028 -30.18503 -29.68152 -27.75182 -27.28388 -26.90076 -25.03864 -23.71562 -23.07583 -22.35912 -21.74023 -20.12254 -18.76790 -18.01675 -17.09667 -16.97838 -16.68283 -16.23141 -16.00020 -15.44151 -15.32998 -15.07598 -14.82103 -14.41624 -14.34170 -14.06610 -13.40951 -13.17416 -13.03802 -12.97445 -12.87919 -12.62042 -12.45758 -12.31720 -12.13059 -11.62143 -11.54308 -11.35228 -11.32603 -11.19513 -10.92110 -10.79291 -10.66271 -10.29726 -10.22150 -9.90147 -9.37434 -8.84788 -8.66324 -8.50263 -8.11977 -7.86104 -7.76334 -6.51976 -5.83142 -2.66405 1.16916 1.44163 3.03103 3.40354 3.51365 3.58554 3.66885 3.73979 3.86777 4.19172 4.65167 4.85427 4.90324 4.91343 4.95280 4.98996 5.04163 5.13816 5.15792 5.19806 5.23998 5.33606 5.40037 5.42052 5.51562 5.54981 5.62058 5.71150 5.75912 5.83399 5.86676 5.95847 6.07380 6.17630 6.22831 6.29323 6.34042 6.41756 6.54502 6.55808 6.67265 6.80964 7.19979 7.44096 7.55601 7.64309 8.17825 8.66030 9.32623 9.43065 10.01633 10.84226 11.68645 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.012981 B = 0.005028 C = 0.004066 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2156.451235 B = 5567.783964 C = 6884.431022 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.078 3.922 3 N -0.600 5.600 4 C 0.512 3.488 5 O -0.392 6.392 6 C -0.189 4.189 7 C -0.045 4.045 8 C -0.260 4.260 9 C 0.177 3.823 10 O -0.317 6.317 11 C 0.028 3.972 12 C -0.258 4.258 13 C 0.219 3.781 14 O -0.264 6.264 15 C 0.026 3.974 16 C 0.106 3.894 17 C 0.101 3.899 18 N -0.592 5.592 19 C -0.238 4.238 20 H 0.068 0.932 21 C -0.021 4.021 22 N -0.950 5.950 23 Si 1.063 2.937 24 H -0.301 1.301 25 H -0.287 1.287 26 H -0.306 1.306 27 C 0.099 3.901 28 H 0.061 0.939 29 H 0.063 0.937 30 H 0.064 0.936 31 H 0.104 0.896 32 H 0.065 0.935 33 H 0.161 0.839 34 H 0.130 0.870 35 H 0.098 0.902 36 H 0.057 0.943 37 H 0.057 0.943 38 H 0.138 0.862 39 H 0.055 0.945 40 H 0.104 0.896 41 H 0.051 0.949 42 H 0.088 0.912 43 H 0.039 0.961 44 H 0.037 0.963 45 H 0.253 0.747 46 H 0.045 0.955 47 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.688 -21.578 -4.559 23.046 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C -0.045 4.045 3 N -0.338 5.338 4 C 0.297 3.703 5 O -0.257 6.257 6 C -0.193 4.193 7 C -0.063 4.063 8 C -0.279 4.279 9 C 0.131 3.869 10 O -0.230 6.230 11 C -0.068 4.068 12 C -0.277 4.277 13 C 0.169 3.831 14 O -0.174 6.174 15 C -0.070 4.070 16 C 0.001 3.999 17 C -0.027 4.027 18 N -0.319 5.319 19 C -0.365 4.365 20 H 0.086 0.914 21 C -0.217 4.217 22 N -0.595 5.595 23 Si 0.898 3.102 24 H -0.230 1.230 25 H -0.214 1.214 26 H -0.234 1.234 27 C -0.028 4.028 28 H 0.080 0.920 29 H 0.082 0.918 30 H 0.083 0.917 31 H 0.121 0.879 32 H 0.083 0.917 33 H 0.178 0.822 34 H 0.147 0.853 35 H 0.116 0.884 36 H 0.075 0.925 37 H 0.076 0.924 38 H 0.156 0.844 39 H 0.073 0.927 40 H 0.123 0.877 41 H 0.069 0.931 42 H 0.105 0.895 43 H 0.057 0.943 44 H 0.055 0.945 45 H 0.063 0.937 46 H 0.062 0.938 47 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -7.207 -19.438 -5.145 21.360 hybrid contribution 0.951 -1.600 0.228 1.875 sum -6.255 -21.038 -4.916 22.492 Atomic orbital electron populations 1.22298 0.96534 1.01790 1.02980 1.22247 0.93914 0.84486 1.03820 1.47332 1.63040 1.12027 1.11375 1.18260 0.80749 0.88780 0.82528 1.91541 1.39605 1.14160 1.80363 1.19592 0.98934 1.01995 0.98791 1.21807 0.97636 0.91327 0.95550 1.20996 1.02438 1.06776 0.97712 1.18813 0.93102 0.89739 0.85209 1.86013 1.52206 1.45496 1.39257 1.23070 0.91614 0.89420 1.02653 1.20309 1.05068 1.01328 1.01012 1.18741 0.88010 0.85700 0.90604 1.86524 1.37452 1.47762 1.45639 1.23136 0.89767 1.02058 0.92008 1.22615 0.98579 0.92335 0.86372 1.22800 0.95262 0.90728 0.93912 1.45748 1.00286 1.34780 1.51099 1.19661 0.88835 1.00077 1.27916 0.91381 1.25305 1.05525 0.94373 0.96530 1.70861 1.07183 1.46212 1.35282 0.83759 0.76415 0.74727 0.75322 1.22994 1.21434 1.23397 1.22914 0.89452 0.91399 0.99044 0.92031 0.91820 0.91702 0.87891 0.91696 0.82235 0.85255 0.88355 0.92471 0.92435 0.84397 0.92665 0.87735 0.93083 0.89465 0.94278 0.94542 0.93661 0.93774 0.92903 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.73 9.14 37.16 0.34 -1.39 16 2 C 0.08 0.94 5.62 -4.04 -0.02 0.92 16 3 N -0.60 -10.47 2.80 -167.04 -0.47 -10.94 16 4 C 0.51 10.91 6.94 -12.58 -0.09 10.82 16 5 O -0.39 -10.53 9.03 -14.36 -0.13 -10.66 16 6 C -0.19 -3.43 5.57 -104.83 -0.58 -4.01 16 7 C -0.05 -0.62 7.42 -39.23 -0.29 -0.91 16 8 C -0.26 -3.13 9.01 -39.49 -0.36 -3.49 16 9 C 0.18 2.39 6.69 -39.07 -0.26 2.13 16 10 O -0.32 -3.73 10.48 -18.86 -0.20 -3.93 16 11 C 0.03 0.20 9.80 101.05 0.99 1.19 16 12 C -0.26 -3.94 8.96 -39.34 -0.35 -4.29 16 13 C 0.22 4.04 6.66 -38.73 -0.26 3.78 16 14 O -0.26 -5.54 8.94 -38.32 -0.34 -5.88 16 15 C 0.03 0.40 9.81 101.05 0.99 1.39 16 16 C 0.11 1.94 4.67 -67.68 -0.32 1.62 16 17 C 0.10 2.14 8.25 -8.51 -0.07 2.07 16 18 N -0.59 -15.60 1.98 -184.62 -0.37 -15.97 16 19 C -0.24 -7.37 8.68 -15.06 -0.13 -7.50 16 20 H 0.07 2.28 8.06 -52.48 -0.42 1.85 16 21 C -0.02 -0.66 5.26 -17.43 -0.09 -0.76 16 22 N -0.95 -32.25 13.70 55.49 0.76 -31.49 16 23 Si 1.06 29.66 25.52 -169.99 -4.34 25.33 16 24 H -0.30 -8.39 6.99 56.52 0.40 -8.00 16 25 H -0.29 -7.35 5.58 56.52 0.32 -7.03 16 26 H -0.31 -8.59 7.11 56.52 0.40 -8.19 16 27 C 0.10 2.26 4.53 -8.37 -0.04 2.22 16 28 H 0.06 0.65 7.12 -51.93 -0.37 0.28 16 29 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 30 H 0.06 0.65 7.71 -51.93 -0.40 0.25 16 31 H 0.10 1.19 3.81 -53.77 -0.20 0.99 16 32 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 33 H 0.16 1.81 2.97 -52.49 -0.16 1.66 16 34 H 0.13 1.13 6.27 -52.48 -0.33 0.80 16 35 H 0.10 0.49 8.14 -51.93 -0.42 0.07 16 36 H 0.06 0.34 7.65 -51.93 -0.40 -0.06 16 37 H 0.06 0.37 7.65 -51.93 -0.40 -0.03 16 38 H 0.14 1.88 6.29 -52.49 -0.33 1.55 16 39 H 0.05 0.77 7.66 -51.93 -0.40 0.37 16 40 H 0.10 1.63 8.14 -51.93 -0.42 1.21 16 41 H 0.05 0.65 7.66 -51.93 -0.40 0.25 16 42 H 0.09 1.24 7.76 -51.93 -0.40 0.84 16 43 H 0.04 0.86 8.14 -51.93 -0.42 0.43 16 44 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 45 H 0.25 8.55 8.73 -40.82 -0.36 8.20 16 46 H 0.04 0.98 6.96 -51.93 -0.36 0.61 16 47 H 0.05 1.33 5.52 -51.93 -0.29 1.04 16 LS Contribution 359.82 15.07 5.42 5.42 Total: -1.00 -39.78 359.82 -6.83 -46.62 By element: Atomic # 1 Polarization: 4.32 SS G_CDS: -6.63 Total: -2.31 kcal Atomic # 6 Polarization: 4.34 SS G_CDS: -0.54 Total: 3.80 kcal Atomic # 7 Polarization: -58.32 SS G_CDS: -0.07 Total: -58.39 kcal Atomic # 8 Polarization: -19.79 SS G_CDS: -0.67 Total: -20.46 kcal Atomic # 14 Polarization: 29.66 SS G_CDS: -4.34 Total: 25.33 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -39.78 -6.83 -46.62 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000957320393.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.905 kcal (2) G-P(sol) polarization free energy of solvation -39.784 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.121 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.831 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.615 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.290 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds