Wall clock time and date at job start Tue Mar 31 2020 18:32:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46496 * 109.47406 * 2 1 4 4 C 1.34783 * 119.99945 * 252.58734 * 3 2 1 5 5 O 1.21619 * 119.99721 * 180.24186 * 4 3 2 6 6 C 1.47294 * 119.99727 * 0.23467 * 4 3 2 7 7 C 1.39863 * 120.13761 * 28.10426 * 6 4 3 8 8 C 1.37543 * 119.96000 * 179.76131 * 7 6 4 9 9 C 1.39178 * 120.24317 * 0.52133 * 8 7 6 10 10 O 1.35719 * 119.86365 * 179.71384 * 9 8 7 11 11 C 1.42903 * 116.99677 * 0.02562 * 10 9 8 12 12 C 1.38689 * 120.27594 * 359.73738 * 9 8 7 13 13 C 1.38436 * 120.02794 * 359.97438 * 12 9 8 14 14 O 1.35668 * 120.11808 * 179.97438 * 13 12 9 15 15 C 1.42897 * 116.99947 * 0.02562 * 14 13 12 16 16 C 1.46502 * 120.00142 * 72.58108 * 3 2 1 17 17 C 1.53492 * 114.20508 * 120.00343 * 16 3 2 18 18 N 1.47069 * 87.98612 * 87.52047 * 17 16 3 19 19 C 1.36936 * 136.05685 * 207.08250 * 18 17 16 20 20 H 1.08003 * 120.00123 * 9.15853 * 19 18 17 21 21 C 1.38805 * 120.00232 * 189.15825 * 19 18 17 22 22 N 1.31616 * 120.00367 * 194.05630 * 21 19 18 23 23 Si 1.86805 * 119.99981 * 14.04750 * 21 19 18 24 24 H 1.48497 * 109.47498 * 270.00589 * 23 21 19 25 25 H 1.48505 * 109.46678 * 30.00372 * 23 21 19 26 26 H 1.48499 * 109.47110 * 149.99932 * 23 21 19 27 27 C 1.47066 * 87.88364 * 27.34183 * 18 17 16 28 28 H 1.09001 * 109.46825 * 60.00045 * 1 2 3 29 29 H 1.08994 * 109.47377 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.47192 * 300.00420 * 1 2 3 31 31 H 1.08997 * 109.47192 * 239.99580 * 2 1 3 32 32 H 1.09001 * 109.46825 * 119.99955 * 2 1 3 33 33 H 1.07999 * 120.01413 * 0.02562 * 7 6 4 34 34 H 1.08003 * 119.87289 * 180.25628 * 8 7 6 35 35 H 1.09003 * 109.46900 * 179.97438 * 11 10 9 36 36 H 1.09000 * 109.47005 * 299.99096 * 11 10 9 37 37 H 1.08994 * 109.47647 * 60.00040 * 11 10 9 38 38 H 1.07995 * 119.98258 * 180.02562 * 12 9 8 39 39 H 1.08999 * 109.46949 * 59.99659 * 15 14 13 40 40 H 1.08992 * 109.46986 * 180.02562 * 15 14 13 41 41 H 1.09000 * 109.46985 * 300.00061 * 15 14 13 42 42 H 1.09002 * 113.28003 * 346.93567 * 16 3 2 43 43 H 1.09000 * 113.47152 * 332.74002 * 17 16 3 44 44 H 1.09004 * 113.47043 * 202.29880 * 17 16 3 45 45 H 0.97001 * 119.99614 * 354.92395 * 22 21 19 46 46 H 1.08999 * 113.46767 * 87.43742 * 27 18 17 47 47 H 1.09004 * 113.46613 * 217.87765 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.5724 1.9001 -1.1138 5 8 2.9818 3.0453 -1.1124 6 6 2.6820 1.0801 -2.3324 7 6 1.7615 0.0552 -2.5744 8 6 1.8644 -0.7050 -3.7160 9 6 2.8885 -0.4658 -4.6276 10 8 2.9861 -1.2245 -5.7487 11 6 2.0048 -2.2478 -5.9270 12 6 3.8099 0.5444 -4.3950 13 6 3.7135 1.3203 -3.2526 14 8 4.6141 2.3086 -3.0230 15 6 5.6372 2.4945 -4.0031 16 6 1.9046 2.1984 1.2105 17 6 3.2472 2.7005 1.7595 18 7 3.1184 3.8624 0.8671 19 6 3.9783 4.7256 0.2420 20 1 5.0401 4.5284 0.2473 21 6 3.4852 5.8541 -0.3984 22 7 4.2542 6.5305 -1.2250 23 14 1.7300 6.4127 -0.0871 24 1 0.8228 5.7641 -1.0677 25 1 1.3256 6.0300 1.2896 26 1 1.6463 7.8878 -0.2356 27 6 1.6597 3.6933 0.9469 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8899 31 1 1.8934 -0.5139 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 0.9680 -0.1362 -1.8673 34 1 1.1504 -1.4934 -3.9035 35 1 2.1976 -2.7775 -6.8600 36 1 2.0553 -2.9487 -5.0938 37 1 1.0128 -1.7976 -5.9636 38 1 4.6023 0.7262 -5.1058 39 1 5.1809 2.7316 -4.9642 40 1 6.2883 3.3135 -3.6977 41 1 6.2230 1.5799 -4.0948 42 1 1.2482 1.7630 1.9641 43 1 4.0876 2.0527 1.5102 44 1 3.2138 2.9601 2.8176 45 1 5.1866 6.2847 -1.3309 46 1 1.2078 4.2145 1.7908 47 1 1.1477 3.8913 0.0052 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000957320393.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:32:27 Heat of formation + Delta-G solvation = 35.689943 kcal Electronic energy + Delta-G solvation = -31170.121238 eV Core-core repulsion = 27130.641047 eV Total energy + Delta-G solvation = -4039.480191 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.07829 -41.07810 -40.01415 -38.64099 -37.34007 -36.35435 -34.23865 -32.01645 -31.36600 -30.87112 -29.39875 -28.26810 -28.17808 -26.81418 -25.17397 -24.34614 -23.46899 -23.12297 -21.79781 -20.09210 -19.48776 -19.09307 -18.27913 -17.88435 -17.34583 -17.00692 -16.86607 -16.47414 -16.35032 -16.23412 -16.01789 -15.70206 -15.50432 -15.41963 -15.14422 -14.44309 -14.21324 -14.00638 -13.66667 -13.43291 -13.38824 -13.16598 -13.01781 -12.95481 -12.62631 -12.52963 -12.46186 -12.45802 -12.27233 -12.06633 -11.86465 -11.81235 -11.32787 -11.26381 -11.06511 -10.68808 -10.05276 -9.62944 -9.34471 -9.07332 -8.64613 -8.29590 -5.04380 0.00297 0.30467 1.37466 1.52624 1.66220 2.08928 2.16534 2.20305 2.42071 2.72691 2.83615 3.22629 3.50345 3.65079 3.70267 3.80429 4.00963 4.01951 4.12696 4.15559 4.21534 4.38891 4.40615 4.42764 4.44613 4.45457 4.47528 4.55498 4.58666 4.68757 4.72808 4.78872 4.80855 4.86892 4.92907 5.04838 5.06873 5.17980 5.20425 5.21619 5.45507 5.46062 5.51801 6.04016 6.21712 6.26843 6.41118 6.78458 6.97617 7.68910 7.83970 8.59800 9.22392 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.012981 B = 0.005028 C = 0.004066 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2156.451235 B = 5567.783964 C = 6884.431022 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.071 3.929 3 N -0.599 5.599 4 C 0.505 3.495 5 O -0.470 6.470 6 C -0.227 4.227 7 C -0.030 4.030 8 C -0.244 4.244 9 C 0.185 3.815 10 O -0.328 6.328 11 C 0.013 3.987 12 C -0.268 4.268 13 C 0.189 3.811 14 O -0.317 6.317 15 C 0.024 3.976 16 C 0.135 3.865 17 C 0.098 3.902 18 N -0.623 5.623 19 C -0.201 4.201 20 H 0.018 0.982 21 C -0.088 4.088 22 N -0.992 5.992 23 Si 1.108 2.892 24 H -0.307 1.307 25 H -0.246 1.246 26 H -0.313 1.313 27 C 0.092 3.908 28 H 0.050 0.950 29 H 0.101 0.899 30 H 0.068 0.932 31 H 0.108 0.892 32 H 0.089 0.911 33 H 0.188 0.812 34 H 0.176 0.824 35 H 0.120 0.880 36 H 0.076 0.924 37 H 0.070 0.930 38 H 0.145 0.855 39 H 0.066 0.934 40 H 0.089 0.911 41 H 0.078 0.922 42 H 0.150 0.850 43 H 0.021 0.979 44 H 0.067 0.933 45 H 0.233 0.767 46 H 0.066 0.934 47 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.701 -26.483 -3.581 28.787 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.050 4.050 3 N -0.335 5.335 4 C 0.292 3.708 5 O -0.340 6.340 6 C -0.231 4.231 7 C -0.048 4.048 8 C -0.262 4.262 9 C 0.138 3.862 10 O -0.241 6.241 11 C -0.081 4.081 12 C -0.287 4.287 13 C 0.141 3.859 14 O -0.229 6.229 15 C -0.071 4.071 16 C 0.029 3.971 17 C -0.029 4.029 18 N -0.350 5.350 19 C -0.329 4.329 20 H 0.036 0.964 21 C -0.277 4.277 22 N -0.642 5.642 23 Si 0.938 3.062 24 H -0.236 1.236 25 H -0.171 1.171 26 H -0.242 1.242 27 C -0.034 4.034 28 H 0.069 0.931 29 H 0.119 0.881 30 H 0.087 0.913 31 H 0.125 0.875 32 H 0.107 0.893 33 H 0.205 0.795 34 H 0.193 0.807 35 H 0.138 0.862 36 H 0.094 0.906 37 H 0.089 0.911 38 H 0.163 0.837 39 H 0.084 0.916 40 H 0.107 0.893 41 H 0.097 0.903 42 H 0.167 0.833 43 H 0.039 0.961 44 H 0.085 0.915 45 H 0.042 0.958 46 H 0.083 0.917 47 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges -11.265 -24.479 -4.109 27.258 hybrid contribution 2.226 -0.441 -0.175 2.276 sum -9.039 -24.920 -4.283 26.853 Atomic orbital electron populations 1.22271 0.93959 1.04156 1.02683 1.22612 0.95829 0.81208 1.05303 1.47512 1.61910 1.14039 1.09995 1.18843 0.79574 0.88226 0.84127 1.91478 1.43093 1.17301 1.82151 1.19635 1.01030 1.04145 0.98285 1.22073 0.96655 0.89555 0.96468 1.21442 1.02102 1.06707 0.95975 1.18921 0.92442 0.88929 0.85871 1.86023 1.53835 1.46120 1.38139 1.23501 0.91193 0.88699 1.04680 1.20376 1.06213 1.01862 1.00244 1.19089 0.88416 0.86169 0.92242 1.86439 1.39073 1.49617 1.47759 1.23229 0.89315 1.02928 0.91598 1.22471 0.96862 0.90345 0.87374 1.23084 0.96736 0.88490 0.94566 1.45681 1.02005 1.34991 1.52340 1.19275 0.87434 0.99806 1.26412 0.96424 1.26493 1.08752 0.95514 0.96920 1.70975 1.06439 1.48253 1.38521 0.83225 0.72335 0.73576 0.77099 1.23612 1.17079 1.24216 1.23129 0.86762 0.95183 0.98361 0.93081 0.88071 0.91331 0.87468 0.89262 0.79510 0.80716 0.86155 0.90579 0.91117 0.83729 0.91570 0.89255 0.90313 0.83251 0.96053 0.91516 0.95845 0.91669 0.95507 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.34 9.14 71.98 0.66 -1.68 16 2 C 0.07 1.38 5.62 86.38 0.49 1.87 16 3 N -0.60 -19.57 2.80 -800.64 -2.24 -21.81 16 4 C 0.51 21.93 6.94 86.62 0.60 22.53 16 5 O -0.47 -26.71 9.03 14.66 0.13 -26.57 16 6 C -0.23 -8.29 5.57 -20.00 -0.11 -8.40 16 7 C -0.03 -0.74 7.42 22.50 0.17 -0.57 16 8 C -0.24 -4.86 9.01 22.33 0.20 -4.66 16 9 C 0.19 4.54 6.69 22.60 0.15 4.69 16 10 O -0.33 -6.66 10.48 -90.40 -0.95 -7.61 16 11 C 0.01 0.12 9.80 113.37 1.11 1.24 16 12 C -0.27 -8.20 8.96 22.42 0.20 -8.00 16 13 C 0.19 7.33 6.66 22.82 0.15 7.48 16 14 O -0.32 -14.64 8.94 -71.09 -0.64 -15.28 16 15 C 0.02 0.82 9.81 113.37 1.11 1.93 16 16 C 0.13 4.47 4.67 45.55 0.21 4.68 16 17 C 0.10 4.03 8.25 83.18 0.69 4.72 16 18 N -0.62 -33.39 1.98 -738.01 -1.46 -34.85 16 19 C -0.20 -13.21 8.68 84.03 0.73 -12.48 16 20 H 0.02 1.31 8.06 -2.91 -0.02 1.28 16 21 C -0.09 -5.98 5.26 84.86 0.45 -5.53 16 22 N -0.99 -72.50 13.70 21.65 0.30 -72.21 16 23 Si 1.11 62.32 25.52 68.60 1.75 64.07 16 24 H -0.31 -17.33 6.99 99.48 0.70 -16.64 16 25 H -0.25 -11.96 5.58 99.48 0.56 -11.40 16 26 H -0.31 -17.72 7.11 99.48 0.71 -17.01 16 27 C 0.09 4.03 4.53 83.27 0.38 4.41 16 28 H 0.05 0.83 7.12 -2.39 -0.02 0.81 16 29 H 0.10 0.69 8.14 -2.39 -0.02 0.67 16 30 H 0.07 0.93 7.71 -2.39 -0.02 0.91 16 31 H 0.11 2.02 3.81 -4.12 -0.02 2.01 16 32 H 0.09 1.38 8.14 -2.39 -0.02 1.36 16 33 H 0.19 3.40 2.97 -2.91 -0.01 3.39 16 34 H 0.18 1.88 6.27 -2.91 -0.02 1.86 16 35 H 0.12 0.66 8.14 -2.39 -0.02 0.64 16 36 H 0.08 0.48 7.65 -2.39 -0.02 0.46 16 37 H 0.07 0.53 7.65 -2.39 -0.02 0.51 16 38 H 0.15 4.02 6.29 -2.91 -0.02 4.01 16 39 H 0.07 2.04 7.66 -2.39 -0.02 2.03 16 40 H 0.09 3.23 8.14 -2.39 -0.02 3.21 16 41 H 0.08 2.17 7.66 -2.39 -0.02 2.15 16 42 H 0.15 3.25 7.76 -2.39 -0.02 3.23 16 43 H 0.02 0.94 8.14 -2.39 -0.02 0.92 16 44 H 0.07 2.40 8.14 -2.39 -0.02 2.38 16 45 H 0.23 17.27 8.73 -92.71 -0.81 16.46 16 46 H 0.07 2.62 6.96 -2.39 -0.02 2.60 16 47 H 0.03 1.34 5.52 -2.38 -0.01 1.32 16 Total: -1.00 -99.76 359.82 4.87 -94.89 By element: Atomic # 1 Polarization: 6.37 SS G_CDS: 0.79 Total: 7.16 kcal Atomic # 6 Polarization: 5.04 SS G_CDS: 7.18 Total: 12.22 kcal Atomic # 7 Polarization: -125.47 SS G_CDS: -3.40 Total: -128.87 kcal Atomic # 8 Polarization: -48.01 SS G_CDS: -1.45 Total: -49.46 kcal Atomic # 14 Polarization: 62.32 SS G_CDS: 1.75 Total: 64.07 kcal Total: -99.76 4.87 -94.89 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000957320393.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.581 kcal (2) G-P(sol) polarization free energy of solvation -99.757 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.823 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.867 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -94.891 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.690 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds