Wall clock time and date at job start Tue Mar 31 2020 18:32:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46500 * 109.47103 * 2 1 4 4 C 1.34779 * 120.00237 * 99.07971 * 3 2 1 5 5 O 1.21546 * 120.00315 * 186.74197 * 4 3 2 6 6 C 1.47873 * 119.99806 * 6.73888 * 4 3 2 7 7 C 1.39510 * 120.09341 * 149.77236 * 6 4 3 8 8 C 1.38513 * 119.90790 * 179.97438 * 7 6 4 9 9 O 1.35909 * 119.95526 * 179.97438 * 8 7 6 10 10 C 1.42895 * 117.00030 * 180.02562 * 9 8 7 11 11 C 1.38729 * 120.09195 * 0.02562 * 8 7 6 12 12 C 1.38736 * 120.18897 * 359.96704 * 11 8 7 13 13 O 1.35909 * 119.95382 * 180.02562 * 12 11 8 14 14 C 1.42900 * 117.00162 * 0.02562 * 13 12 11 15 15 C 1.38511 * 120.09229 * 0.03064 * 12 11 8 16 16 C 1.46498 * 120.00095 * 279.08289 * 3 2 1 17 17 C 1.53940 * 113.74194 * 222.67943 * 16 3 2 18 18 N 1.47812 * 86.03820 * 222.08339 * 17 16 3 19 19 C 1.36944 * 134.45371 * 204.64344 * 18 17 16 20 20 H 1.08004 * 119.99324 * 179.86836 * 19 18 17 21 21 C 1.38814 * 120.00213 * 359.86783 * 19 18 17 22 22 N 1.31618 * 120.00103 * 359.97438 * 21 19 18 23 23 Si 1.86795 * 119.99782 * 179.97438 * 21 19 18 24 24 H 1.48498 * 109.47140 * 359.97438 * 23 21 19 25 25 H 1.48499 * 109.47287 * 120.00069 * 23 21 19 26 26 H 1.48506 * 109.46961 * 240.00264 * 23 21 19 27 27 C 1.47576 * 91.05133 * 24.55110 * 18 17 16 28 28 H 1.08997 * 109.47610 * 299.99981 * 1 2 3 29 29 H 1.09003 * 109.46972 * 60.00631 * 1 2 3 30 30 H 1.09006 * 109.46973 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.47610 * 240.00019 * 2 1 3 32 32 H 1.09006 * 109.47393 * 119.99661 * 2 1 3 33 33 H 1.07998 * 120.04578 * 359.70350 * 7 6 4 34 34 H 1.08998 * 109.47047 * 299.99906 * 10 9 8 35 35 H 1.08999 * 109.47292 * 59.99316 * 10 9 8 36 36 H 1.08997 * 109.47446 * 179.97438 * 10 9 8 37 37 H 1.08002 * 119.90677 * 179.97438 * 11 8 7 38 38 H 1.08999 * 109.47147 * 180.02562 * 14 13 12 39 39 H 1.09005 * 109.46798 * 300.00042 * 14 13 12 40 40 H 1.08997 * 109.46855 * 59.99875 * 14 13 12 41 41 H 1.07995 * 120.05062 * 179.97438 * 15 12 11 42 42 H 1.09000 * 112.94730 * 354.27113 * 16 3 2 43 43 H 1.09004 * 113.77470 * 336.34869 * 17 16 3 44 44 H 1.09006 * 113.77288 * 107.74361 * 17 16 3 45 45 H 0.96993 * 119.99805 * 180.02562 * 22 21 19 46 46 H 1.08998 * 113.76901 * 221.15414 * 27 18 17 47 47 H 1.08998 * 113.77318 * 89.75312 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.4166 1.9552 1.1526 5 8 2.7051 3.1357 1.1757 6 6 2.5025 1.1488 2.3891 7 6 3.4411 1.4700 3.3699 8 6 3.5179 0.7123 4.5269 9 8 4.4323 1.0240 5.4828 10 6 4.4569 0.2003 6.6502 11 6 2.6634 -0.3650 4.7108 12 6 1.7284 -0.6878 3.7381 13 8 0.8932 -1.7439 3.9234 14 6 1.0337 -2.4759 5.1426 15 6 1.6449 0.0646 2.5781 16 6 2.0736 2.1386 -1.2528 17 6 3.3625 2.9632 -1.4221 18 7 2.4860 4.0373 -1.9349 19 6 2.6697 5.1106 -2.7652 20 1 1.8414 5.7655 -2.9924 21 6 3.9204 5.3569 -3.3149 22 7 4.9298 4.5591 -3.0376 23 14 4.1707 6.8207 -4.4480 24 1 2.8887 7.5547 -4.5990 25 1 5.1948 7.7262 -3.8681 26 1 4.6274 6.3443 -5.7784 27 6 1.3336 3.4873 -1.1949 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8934 -0.5138 -0.8899 32 1 1.8934 -0.5138 0.8900 33 1 4.1099 2.3055 3.2254 34 1 3.4876 0.2447 7.1467 35 1 4.6717 -0.8292 6.3640 36 1 5.2304 0.5570 7.3303 37 1 2.7261 -0.9540 5.6139 38 1 0.3095 -3.2903 5.1630 39 1 2.0420 -2.8851 5.2066 40 1 0.8571 -1.8109 5.9880 41 1 0.9171 -0.1875 1.8212 42 1 1.8203 1.5361 -2.1251 43 1 3.8538 3.2090 -0.4806 44 1 4.0474 2.5598 -2.1680 45 1 5.8038 4.7315 -3.4213 46 1 0.4015 3.5016 -1.7598 47 1 1.2275 3.8873 -0.1866 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000957320607.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:32:31 Heat of formation + Delta-G solvation = 23.868173 kcal Electronic energy + Delta-G solvation = -29602.248711 eV Core-core repulsion = 25562.255889 eV Total energy + Delta-G solvation = -4039.992821 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.08508 -39.90512 -39.09003 -37.30120 -36.25590 -35.40427 -32.08713 -30.71531 -30.59907 -30.04422 -28.36576 -27.26549 -26.86420 -24.59035 -24.26984 -23.33854 -22.57631 -22.21253 -20.33143 -19.32933 -17.74799 -17.25675 -17.00864 -16.66370 -16.28017 -16.20881 -16.10264 -15.78288 -15.23818 -15.01176 -14.65606 -14.55096 -14.17728 -13.83081 -13.60598 -13.33113 -13.03226 -12.74728 -12.52118 -12.34134 -12.22182 -12.20635 -11.92708 -11.64487 -11.53050 -11.36174 -11.32478 -11.16762 -11.01001 -10.78395 -10.65901 -10.46062 -10.00934 -9.86893 -9.38929 -9.31334 -8.87127 -8.55494 -8.17597 -8.01564 -6.67336 -5.62309 -2.92661 0.77566 1.26132 2.84240 2.87575 3.05121 3.36850 3.48285 3.53352 3.55764 3.74063 4.42375 4.55440 4.60295 4.67207 4.75542 4.78277 4.80483 4.89163 4.93084 5.00484 5.07911 5.13669 5.21402 5.24363 5.40676 5.42852 5.47953 5.64421 5.77060 5.77511 5.84876 5.91796 5.93926 6.01361 6.19690 6.25924 6.31783 6.45810 6.70624 6.72934 6.87185 7.05657 7.21391 7.41366 7.67753 7.71165 7.83767 8.12009 8.57979 9.19099 9.85159 10.76821 11.55225 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.017769 B = 0.002969 C = 0.002627 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1575.402135 B = 9427.693845 C =10657.972248 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.067 3.933 3 N -0.591 5.591 4 C 0.551 3.449 5 O -0.500 6.500 6 C -0.043 4.043 7 C -0.131 4.131 8 C 0.158 3.842 9 O -0.310 6.310 10 C 0.027 3.973 11 C -0.282 4.282 12 C 0.155 3.845 13 O -0.312 6.312 14 C 0.027 3.973 15 C -0.189 4.189 16 C 0.090 3.910 17 C 0.156 3.844 18 N -0.604 5.604 19 C -0.214 4.214 20 H 0.079 0.921 21 C -0.011 4.011 22 N -0.920 5.920 23 Si 0.911 3.089 24 H -0.280 1.280 25 H -0.291 1.291 26 H -0.291 1.291 27 C 0.111 3.889 28 H 0.061 0.939 29 H 0.067 0.933 30 H 0.067 0.933 31 H 0.076 0.924 32 H 0.108 0.892 33 H 0.145 0.855 34 H 0.054 0.946 35 H 0.054 0.946 36 H 0.102 0.898 37 H 0.135 0.865 38 H 0.101 0.899 39 H 0.055 0.945 40 H 0.054 0.946 41 H 0.171 0.829 42 H 0.105 0.895 43 H 0.052 0.948 44 H 0.067 0.933 45 H 0.251 0.749 46 H 0.036 0.964 47 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.107 -19.487 19.265 28.309 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C -0.056 4.056 3 N -0.324 5.324 4 C 0.338 3.662 5 O -0.375 6.375 6 C -0.047 4.047 7 C -0.150 4.150 8 C 0.113 3.887 9 O -0.223 6.223 10 C -0.068 4.068 11 C -0.302 4.302 12 C 0.109 3.891 13 O -0.225 6.225 14 C -0.068 4.068 15 C -0.208 4.208 16 C -0.013 4.013 17 C 0.030 3.970 18 N -0.330 5.330 19 C -0.342 4.342 20 H 0.097 0.903 21 C -0.207 4.207 22 N -0.568 5.568 23 Si 0.742 3.258 24 H -0.205 1.205 25 H -0.218 1.218 26 H -0.218 1.218 27 C -0.015 4.015 28 H 0.080 0.920 29 H 0.086 0.914 30 H 0.086 0.914 31 H 0.094 0.906 32 H 0.125 0.875 33 H 0.163 0.837 34 H 0.073 0.927 35 H 0.073 0.927 36 H 0.120 0.880 37 H 0.153 0.847 38 H 0.120 0.880 39 H 0.073 0.927 40 H 0.073 0.927 41 H 0.188 0.812 42 H 0.123 0.877 43 H 0.070 0.930 44 H 0.086 0.914 45 H 0.061 0.939 46 H 0.054 0.946 47 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -6.777 -18.540 18.915 27.339 hybrid contribution 0.250 0.445 -0.021 0.511 sum -6.527 -18.095 18.894 26.963 Atomic orbital electron populations 1.22276 0.95954 1.02226 1.03059 1.22479 0.94489 0.83886 1.04762 1.47982 1.63140 1.13493 1.07800 1.18058 0.78404 0.87059 0.82715 1.90885 1.47306 1.14739 1.84533 1.19652 0.95572 0.94534 0.94899 1.20389 1.01559 1.01761 0.91312 1.18540 0.88521 0.92740 0.88922 1.86142 1.53575 1.54537 1.28024 1.23070 1.02780 0.94995 0.85972 1.21357 1.02835 1.03328 1.02669 1.18565 0.89341 0.87804 0.93358 1.86094 1.55618 1.40589 1.40176 1.23067 1.02695 0.95802 0.85281 1.21553 1.04683 0.96576 0.97969 1.24100 1.02222 0.91361 0.83612 1.22705 0.91398 0.85159 0.97724 1.45686 1.06036 1.30276 1.51006 1.19040 0.95168 1.02060 1.17929 0.90284 1.24775 0.95586 0.99279 1.01049 1.69842 1.00595 1.38625 1.47696 0.86051 0.77604 0.82043 0.80117 1.20540 1.21837 1.21847 1.22955 0.91930 0.90471 0.96192 0.91974 0.91437 0.91426 0.90562 0.87493 0.83707 0.92724 0.92705 0.88004 0.84730 0.88034 0.92687 0.92719 0.81233 0.87722 0.93001 0.91432 0.93861 0.94597 0.93050 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.81 9.15 37.16 0.34 -1.47 16 2 C 0.07 0.80 5.58 -4.04 -0.02 0.78 16 3 N -0.59 -9.86 2.74 -169.00 -0.46 -10.33 16 4 C 0.55 10.12 6.87 -12.32 -0.08 10.04 16 5 O -0.50 -11.44 12.45 5.33 0.07 -11.38 16 6 C -0.04 -0.65 5.58 -105.00 -0.59 -1.24 16 7 C -0.13 -1.95 9.53 -39.01 -0.37 -2.32 16 8 C 0.16 1.98 6.68 -39.30 -0.26 1.72 16 9 O -0.31 -3.58 10.49 -19.46 -0.20 -3.78 16 10 C 0.03 0.18 9.81 101.05 0.99 1.17 16 11 C -0.28 -2.92 8.02 -39.22 -0.31 -3.23 16 12 C 0.15 1.71 6.68 -39.30 -0.26 1.45 16 13 O -0.31 -2.95 10.49 -19.45 -0.20 -3.15 16 14 C 0.03 0.14 9.81 101.05 0.99 1.14 16 15 C -0.19 -2.35 7.42 -39.00 -0.29 -2.64 16 16 C 0.09 1.81 4.58 -70.15 -0.32 1.49 16 17 C 0.16 4.02 6.78 -2.84 -0.02 4.01 16 18 N -0.60 -16.81 3.70 -177.88 -0.66 -17.47 16 19 C -0.21 -6.40 10.70 -15.06 -0.16 -6.56 16 20 H 0.08 2.28 7.83 -52.48 -0.41 1.87 16 21 C -0.01 -0.32 5.50 -17.43 -0.10 -0.42 16 22 N -0.92 -28.77 11.39 55.49 0.63 -28.14 16 23 Si 0.91 23.25 29.55 -169.99 -5.02 18.22 16 24 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 25 H -0.29 -7.50 7.11 56.52 0.40 -7.10 16 26 H -0.29 -7.37 7.11 56.52 0.40 -6.97 16 27 C 0.11 2.55 8.27 -2.97 -0.02 2.53 16 28 H 0.06 0.67 7.10 -51.93 -0.37 0.30 16 29 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 30 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.08 0.84 8.13 -51.93 -0.42 0.41 16 32 H 0.11 1.19 3.97 -52.25 -0.21 0.98 16 33 H 0.15 2.33 7.93 -52.49 -0.42 1.92 16 34 H 0.05 0.30 7.66 -51.93 -0.40 -0.10 16 35 H 0.05 0.29 7.65 -51.93 -0.40 -0.10 16 36 H 0.10 0.48 8.14 -51.93 -0.42 0.06 16 37 H 0.14 0.98 4.49 -52.49 -0.24 0.75 16 38 H 0.10 0.34 8.14 -51.93 -0.42 -0.08 16 39 H 0.05 0.25 7.65 -51.93 -0.40 -0.15 16 40 H 0.05 0.25 7.66 -51.93 -0.40 -0.15 16 41 H 0.17 1.89 2.64 -52.49 -0.14 1.75 16 42 H 0.10 1.93 8.07 -51.93 -0.42 1.51 16 43 H 0.05 1.46 5.76 -51.93 -0.30 1.16 16 44 H 0.07 1.88 7.17 -51.93 -0.37 1.51 16 45 H 0.25 7.57 8.31 -40.82 -0.34 7.23 16 46 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 47 H 0.05 1.25 6.26 -51.93 -0.32 0.93 16 LS Contribution 372.09 15.07 5.61 5.61 Total: -1.00 -36.79 372.09 -7.20 -43.99 By element: Atomic # 1 Polarization: 6.44 SS G_CDS: -6.45 Total: -0.02 kcal Atomic # 6 Polarization: 6.93 SS G_CDS: -0.49 Total: 6.44 kcal Atomic # 7 Polarization: -55.44 SS G_CDS: -0.49 Total: -55.93 kcal Atomic # 8 Polarization: -17.97 SS G_CDS: -0.34 Total: -18.32 kcal Atomic # 14 Polarization: 23.25 SS G_CDS: -5.02 Total: 18.22 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -36.79 -7.20 -43.99 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000957320607.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.857 kcal (2) G-P(sol) polarization free energy of solvation -36.793 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.064 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.196 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.989 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.868 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds