Wall clock time and date at job start Tue Mar 31 2020 18:32:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46499 * 109.47042 * 2 1 4 4 C 1.34776 * 120.00103 * 253.68679 * 3 2 1 5 5 O 1.21589 * 119.99892 * 184.45602 * 4 3 2 6 6 C 1.47600 * 120.00104 * 4.44995 * 4 3 2 7 7 C 1.39711 * 120.07088 * 22.76821 * 6 4 3 8 8 C 1.37787 * 120.00338 * 180.02562 * 7 6 4 9 9 C 1.38840 * 120.15262 * 0.02562 * 8 7 6 10 10 O 1.35791 * 119.92931 * 180.02562 * 9 8 7 11 11 C 1.42899 * 117.00236 * 0.02562 * 10 9 8 12 12 C 1.39398 * 120.14018 * 359.97438 * 9 8 7 13 13 O 1.36002 * 120.00280 * 180.02562 * 12 9 8 14 14 C 1.42899 * 117.00261 * 180.02562 * 13 12 9 15 15 C 1.38144 * 119.99526 * 359.71992 * 12 9 8 16 16 C 1.46507 * 119.99982 * 73.68505 * 3 2 1 17 17 C 1.53945 * 113.74004 * 141.26097 * 16 3 2 18 18 N 1.47812 * 86.03828 * 90.88127 * 17 16 3 19 19 C 1.36936 * 134.46003 * 204.64235 * 18 17 16 20 20 H 1.07998 * 120.00500 * 179.86917 * 19 18 17 21 21 C 1.38809 * 119.99445 * 359.86536 * 19 18 17 22 22 N 1.31615 * 120.00558 * 0.02562 * 21 19 18 23 23 Si 1.86810 * 119.99769 * 179.97438 * 21 19 18 24 24 H 1.48493 * 109.47042 * 0.02562 * 23 21 19 25 25 H 1.48501 * 109.46816 * 120.00203 * 23 21 19 26 26 H 1.48497 * 109.46966 * 239.99950 * 23 21 19 27 27 C 1.47587 * 91.04904 * 24.54683 * 18 17 16 28 28 H 1.08997 * 109.46820 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.47302 * 300.00047 * 1 2 3 30 30 H 1.09003 * 109.46820 * 60.00415 * 1 2 3 31 31 H 1.08999 * 109.47302 * 239.99953 * 2 1 3 32 32 H 1.08995 * 109.47152 * 119.99587 * 2 1 3 33 33 H 1.07993 * 119.99550 * 0.02562 * 7 6 4 34 34 H 1.08001 * 119.92426 * 180.02562 * 8 7 6 35 35 H 1.09004 * 109.47409 * 300.00526 * 11 10 9 36 36 H 1.09000 * 109.47228 * 59.99933 * 11 10 9 37 37 H 1.08996 * 109.47296 * 180.02562 * 11 10 9 38 38 H 1.09007 * 109.47077 * 300.00037 * 14 13 12 39 39 H 1.08996 * 109.47158 * 59.99354 * 14 13 12 40 40 H 1.08991 * 109.47440 * 180.02562 * 14 13 12 41 41 H 1.08006 * 120.07525 * 180.29717 * 15 12 9 42 42 H 1.08994 * 112.94033 * 9.66570 * 16 3 2 43 43 H 1.09002 * 113.76632 * 205.14627 * 17 16 3 44 44 H 1.08997 * 113.77324 * 336.54212 * 17 16 3 45 45 H 0.97001 * 120.00488 * 180.02562 * 22 21 19 46 46 H 1.09005 * 113.76601 * 221.14914 * 27 18 17 47 47 H 1.09000 * 113.77041 * 89.75854 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.5520 1.9073 -1.1202 5 8 3.0308 3.0247 -1.0987 6 6 2.5554 1.1269 -2.3730 7 6 1.6323 0.0945 -2.5572 8 6 1.6371 -0.6334 -3.7271 9 6 2.5582 -0.3441 -4.7248 10 8 2.5585 -1.0640 -5.8761 11 6 1.5837 -2.1025 -5.9922 12 6 3.4821 0.6847 -4.5475 13 8 4.3828 0.9661 -5.5269 14 6 5.3003 2.0328 -5.2775 15 6 3.4785 1.4224 -3.3796 16 6 1.9264 2.1907 1.2177 17 6 3.1483 3.0970 1.4531 18 7 2.4057 4.1227 0.6907 19 6 2.7671 5.2194 -0.0454 20 1 2.0092 5.8250 -0.5199 21 6 4.1077 5.5527 -0.1815 22 7 5.0314 4.8145 0.3965 23 14 4.6009 7.0484 -1.1862 24 1 3.3836 7.7040 -1.7281 25 1 5.3346 8.0062 -0.3205 26 1 5.4764 6.6243 -2.3081 27 6 1.1191 3.4892 1.0392 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8901 31 1 1.8934 -0.5138 -0.8900 32 1 1.8933 -0.5137 0.8900 33 1 0.9150 -0.1329 -1.7826 34 1 0.9226 -1.4309 -3.8683 35 1 1.7295 -2.8287 -5.1926 36 1 0.5847 -1.6733 -5.9155 37 1 1.6936 -2.5978 -6.9569 38 1 4.7467 2.9575 -5.1142 39 1 5.8927 1.8029 -4.3919 40 1 5.9610 2.1521 -6.1361 41 1 4.1906 2.2229 -3.2429 42 1 1.6356 1.6099 2.0930 43 1 3.3074 3.3569 2.4997 44 1 4.0548 2.7500 0.9572 45 1 5.9682 5.0477 0.3016 46 1 0.4084 3.4548 0.2134 47 1 0.6807 3.8646 1.9639 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000957343287.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:32:37 Heat of formation + Delta-G solvation = 58.144543 kcal Electronic energy + Delta-G solvation = -30728.438382 eV Core-core repulsion = 26689.931895 eV Total energy + Delta-G solvation = -4038.506487 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -40.76358 -39.66322 -38.42567 -37.24570 -35.79461 -35.08490 -31.85377 -30.43594 -30.23925 -29.72731 -27.66693 -27.22610 -26.88418 -24.61725 -23.77721 -23.12816 -22.29648 -21.97411 -20.28046 -18.64106 -17.95516 -17.17300 -16.65509 -16.52847 -16.08374 -15.97206 -15.37900 -15.21727 -14.71306 -14.49232 -14.44304 -14.35057 -14.12306 -13.47399 -13.33111 -12.99563 -12.91321 -12.58923 -12.35894 -12.29478 -12.10022 -12.04437 -11.53521 -11.43288 -11.21605 -11.17019 -11.06696 -11.00294 -10.85025 -10.67758 -10.42696 -10.33054 -9.96269 -9.57352 -9.24156 -8.73411 -8.61974 -8.25093 -7.74245 -7.69872 -6.36413 -5.40114 -2.65445 1.18091 1.40325 3.19031 3.33895 3.42695 3.54671 3.60256 3.60870 3.61921 4.23370 4.72352 4.74286 4.89840 4.91323 4.97697 5.00178 5.15252 5.23951 5.26653 5.31256 5.37669 5.41386 5.41874 5.45031 5.51572 5.69604 5.71694 5.76421 5.79572 5.81456 5.89800 6.06750 6.14971 6.17704 6.31812 6.43558 6.54096 6.62932 6.66239 6.71820 7.03818 7.08549 7.44260 7.58998 7.63677 7.90219 8.21477 8.31977 9.29000 9.36757 10.08825 10.94874 11.79069 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.011166 B = 0.004941 C = 0.003625 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2507.008114 B = 5665.079979 C = 7721.874853 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.077 3.923 3 N -0.596 5.596 4 C 0.509 3.491 5 O -0.397 6.397 6 C -0.108 4.108 7 C -0.127 4.127 8 C -0.185 4.185 9 C 0.107 3.893 10 O -0.307 6.307 11 C 0.027 3.973 12 C 0.090 3.910 13 O -0.310 6.310 14 C 0.024 3.976 15 C -0.117 4.117 16 C 0.097 3.903 17 C 0.160 3.840 18 N -0.581 5.581 19 C -0.175 4.175 20 H 0.067 0.933 21 C 0.001 3.999 22 N -0.919 5.919 23 Si 0.895 3.105 24 H -0.285 1.285 25 H -0.297 1.297 26 H -0.296 1.296 27 C 0.102 3.898 28 H 0.062 0.938 29 H 0.065 0.935 30 H 0.062 0.938 31 H 0.105 0.895 32 H 0.065 0.935 33 H 0.165 0.835 34 H 0.135 0.865 35 H 0.054 0.946 36 H 0.054 0.946 37 H 0.097 0.903 38 H 0.059 0.941 39 H 0.058 0.942 40 H 0.099 0.901 41 H 0.149 0.851 42 H 0.076 0.924 43 H 0.027 0.973 44 H 0.079 0.921 45 H 0.243 0.757 46 H 0.037 0.963 47 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.975 -17.237 -6.955 20.226 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C -0.047 4.047 3 N -0.333 5.333 4 C 0.293 3.707 5 O -0.262 6.262 6 C -0.112 4.112 7 C -0.145 4.145 8 C -0.204 4.204 9 C 0.061 3.939 10 O -0.221 6.221 11 C -0.069 4.069 12 C 0.045 3.955 13 O -0.224 6.224 14 C -0.071 4.071 15 C -0.137 4.137 16 C -0.008 4.008 17 C 0.033 3.967 18 N -0.307 5.307 19 C -0.303 4.303 20 H 0.085 0.915 21 C -0.194 4.194 22 N -0.569 5.569 23 Si 0.728 3.272 24 H -0.210 1.210 25 H -0.225 1.225 26 H -0.223 1.223 27 C -0.025 4.025 28 H 0.081 0.919 29 H 0.084 0.916 30 H 0.081 0.919 31 H 0.123 0.877 32 H 0.083 0.917 33 H 0.181 0.819 34 H 0.153 0.847 35 H 0.073 0.927 36 H 0.073 0.927 37 H 0.116 0.884 38 H 0.078 0.922 39 H 0.077 0.923 40 H 0.117 0.883 41 H 0.166 0.834 42 H 0.094 0.906 43 H 0.044 0.956 44 H 0.097 0.903 45 H 0.053 0.947 46 H 0.055 0.945 47 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -7.303 -16.390 -7.480 19.441 hybrid contribution 0.068 0.814 -0.265 0.859 sum -7.235 -15.576 -7.745 18.840 Atomic orbital electron populations 1.22310 0.96623 1.01715 1.02960 1.22307 0.93913 0.84580 1.03867 1.47301 1.63062 1.12070 1.10873 1.18386 0.82045 0.87616 0.82690 1.91478 1.37255 1.14930 1.82580 1.20109 0.97455 0.97466 0.96175 1.22235 0.99941 0.94730 0.97560 1.20981 1.00995 1.04050 0.94396 1.18420 0.95621 0.92708 0.87170 1.86119 1.55004 1.46085 1.34846 1.23048 0.91526 0.89252 1.03032 1.18097 0.92310 0.95599 0.89506 1.86113 1.44078 1.52564 1.39626 1.23109 0.92003 0.89076 1.02941 1.21260 1.00826 1.00056 0.91534 1.23026 1.01178 0.91350 0.85211 1.22509 0.94929 0.85255 0.93963 1.45555 0.99170 1.30193 1.55784 1.18644 0.91110 0.99199 1.21334 0.91497 1.24439 0.95524 0.98532 1.00947 1.69793 0.98922 1.39494 1.48659 0.86284 0.77989 0.83085 0.79875 1.21033 1.22473 1.22340 1.22980 0.91595 0.90822 0.97144 0.91915 0.91643 0.91949 0.87742 0.91657 0.81851 0.84736 0.92727 0.92728 0.88436 0.92212 0.92343 0.88308 0.83369 0.90563 0.95578 0.90295 0.94712 0.94486 0.94726 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.78 9.06 37.16 0.34 -1.44 16 2 C 0.08 0.94 5.59 -4.04 -0.02 0.92 16 3 N -0.60 -10.40 2.77 -169.10 -0.47 -10.87 16 4 C 0.51 10.50 7.03 -12.44 -0.09 10.41 16 5 O -0.40 -10.29 10.07 5.29 0.05 -10.24 16 6 C -0.11 -1.89 5.60 -104.97 -0.59 -2.48 16 7 C -0.13 -1.72 7.49 -39.20 -0.29 -2.02 16 8 C -0.19 -2.27 9.01 -39.52 -0.36 -2.63 16 9 C 0.11 1.54 6.71 -38.93 -0.26 1.28 16 10 O -0.31 -4.10 10.26 -33.75 -0.35 -4.44 16 11 C 0.03 0.22 9.81 101.05 0.99 1.21 16 12 C 0.09 1.48 6.69 -39.18 -0.26 1.22 16 13 O -0.31 -4.96 10.28 -34.41 -0.35 -5.31 16 14 C 0.02 0.32 9.81 101.05 0.99 1.31 16 15 C -0.12 -2.09 8.57 -39.06 -0.33 -2.42 16 16 C 0.10 1.83 4.49 -70.14 -0.32 1.51 16 17 C 0.16 3.87 6.46 -2.84 -0.02 3.85 16 18 N -0.58 -15.32 2.10 -177.87 -0.37 -15.69 16 19 C -0.17 -5.15 8.71 -15.06 -0.13 -5.28 16 20 H 0.07 1.98 7.83 -52.49 -0.41 1.57 16 21 C 0.00 0.02 5.01 -17.43 -0.09 -0.07 16 22 N -0.92 -28.35 11.39 55.49 0.63 -27.72 16 23 Si 0.89 23.62 29.55 -169.99 -5.02 18.59 16 24 H -0.28 -7.36 7.11 56.52 0.40 -6.96 16 25 H -0.30 -7.85 7.11 56.52 0.40 -7.45 16 26 H -0.30 -7.84 7.11 56.52 0.40 -7.44 16 27 C 0.10 2.16 8.42 -2.97 -0.02 2.13 16 28 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 29 H 0.06 0.69 8.05 -51.93 -0.42 0.27 16 30 H 0.06 0.68 7.03 -51.93 -0.37 0.31 16 31 H 0.11 1.23 4.00 -52.70 -0.21 1.02 16 32 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 33 H 0.16 1.87 2.38 -52.49 -0.13 1.75 16 34 H 0.13 1.18 6.27 -52.49 -0.33 0.85 16 35 H 0.05 0.37 7.65 -51.93 -0.40 -0.03 16 36 H 0.05 0.38 7.65 -51.93 -0.40 -0.02 16 37 H 0.10 0.59 8.14 -51.93 -0.42 0.16 16 38 H 0.06 0.83 7.65 -51.93 -0.40 0.44 16 39 H 0.06 0.78 7.67 -51.93 -0.40 0.38 16 40 H 0.10 1.04 8.14 -51.93 -0.42 0.61 16 41 H 0.15 2.86 6.04 -52.48 -0.32 2.54 16 42 H 0.08 1.18 8.08 -51.93 -0.42 0.76 16 43 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 44 H 0.08 2.18 6.37 -51.93 -0.33 1.85 16 45 H 0.24 7.36 8.31 -40.82 -0.34 7.02 16 46 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 47 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 LS Contribution 368.18 15.07 5.55 5.55 Total: -1.00 -36.41 368.18 -7.41 -43.82 By element: Atomic # 1 Polarization: 5.43 SS G_CDS: -6.61 Total: -1.18 kcal Atomic # 6 Polarization: 7.97 SS G_CDS: -0.46 Total: 7.50 kcal Atomic # 7 Polarization: -54.07 SS G_CDS: -0.21 Total: -54.28 kcal Atomic # 8 Polarization: -19.35 SS G_CDS: -0.65 Total: -20.00 kcal Atomic # 14 Polarization: 23.62 SS G_CDS: -5.02 Total: 18.59 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -36.41 -7.41 -43.82 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000957343287.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.961 kcal (2) G-P(sol) polarization free energy of solvation -36.411 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.551 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.406 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.817 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.145 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds