Wall clock time and date at job start Tue Mar 31 2020 18:32:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46499 * 109.47042 * 2 1 4 4 C 1.34776 * 120.00103 * 253.68679 * 3 2 1 5 5 O 1.21589 * 119.99892 * 184.45602 * 4 3 2 6 6 C 1.47600 * 120.00104 * 4.44995 * 4 3 2 7 7 C 1.39711 * 120.07088 * 22.76821 * 6 4 3 8 8 C 1.37787 * 120.00338 * 180.02562 * 7 6 4 9 9 C 1.38840 * 120.15262 * 0.02562 * 8 7 6 10 10 O 1.35791 * 119.92931 * 180.02562 * 9 8 7 11 11 C 1.42899 * 117.00236 * 0.02562 * 10 9 8 12 12 C 1.39398 * 120.14018 * 359.97438 * 9 8 7 13 13 O 1.36002 * 120.00280 * 180.02562 * 12 9 8 14 14 C 1.42899 * 117.00261 * 180.02562 * 13 12 9 15 15 C 1.38144 * 119.99526 * 359.71992 * 12 9 8 16 16 C 1.46507 * 119.99982 * 73.68505 * 3 2 1 17 17 C 1.53945 * 113.74004 * 141.26097 * 16 3 2 18 18 N 1.47812 * 86.03828 * 90.88127 * 17 16 3 19 19 C 1.36936 * 134.46003 * 204.64235 * 18 17 16 20 20 H 1.07998 * 120.00500 * 179.86917 * 19 18 17 21 21 C 1.38809 * 119.99445 * 359.86536 * 19 18 17 22 22 N 1.31615 * 120.00558 * 0.02562 * 21 19 18 23 23 Si 1.86810 * 119.99769 * 179.97438 * 21 19 18 24 24 H 1.48493 * 109.47042 * 0.02562 * 23 21 19 25 25 H 1.48501 * 109.46816 * 120.00203 * 23 21 19 26 26 H 1.48497 * 109.46966 * 239.99950 * 23 21 19 27 27 C 1.47587 * 91.04904 * 24.54683 * 18 17 16 28 28 H 1.08997 * 109.46820 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.47302 * 300.00047 * 1 2 3 30 30 H 1.09003 * 109.46820 * 60.00415 * 1 2 3 31 31 H 1.08999 * 109.47302 * 239.99953 * 2 1 3 32 32 H 1.08995 * 109.47152 * 119.99587 * 2 1 3 33 33 H 1.07993 * 119.99550 * 0.02562 * 7 6 4 34 34 H 1.08001 * 119.92426 * 180.02562 * 8 7 6 35 35 H 1.09004 * 109.47409 * 300.00526 * 11 10 9 36 36 H 1.09000 * 109.47228 * 59.99933 * 11 10 9 37 37 H 1.08996 * 109.47296 * 180.02562 * 11 10 9 38 38 H 1.09007 * 109.47077 * 300.00037 * 14 13 12 39 39 H 1.08996 * 109.47158 * 59.99354 * 14 13 12 40 40 H 1.08991 * 109.47440 * 180.02562 * 14 13 12 41 41 H 1.08006 * 120.07525 * 180.29717 * 15 12 9 42 42 H 1.08994 * 112.94033 * 9.66570 * 16 3 2 43 43 H 1.09002 * 113.76632 * 205.14627 * 17 16 3 44 44 H 1.08997 * 113.77324 * 336.54212 * 17 16 3 45 45 H 0.97001 * 120.00488 * 180.02562 * 22 21 19 46 46 H 1.09005 * 113.76601 * 221.14914 * 27 18 17 47 47 H 1.09000 * 113.77041 * 89.75854 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.5520 1.9073 -1.1202 5 8 3.0308 3.0247 -1.0987 6 6 2.5554 1.1269 -2.3730 7 6 1.6323 0.0945 -2.5572 8 6 1.6371 -0.6334 -3.7271 9 6 2.5582 -0.3441 -4.7248 10 8 2.5585 -1.0640 -5.8761 11 6 1.5837 -2.1025 -5.9922 12 6 3.4821 0.6847 -4.5475 13 8 4.3828 0.9661 -5.5269 14 6 5.3003 2.0328 -5.2775 15 6 3.4785 1.4224 -3.3796 16 6 1.9264 2.1907 1.2177 17 6 3.1483 3.0970 1.4531 18 7 2.4057 4.1227 0.6907 19 6 2.7671 5.2194 -0.0454 20 1 2.0092 5.8250 -0.5199 21 6 4.1077 5.5527 -0.1815 22 7 5.0314 4.8145 0.3965 23 14 4.6009 7.0484 -1.1862 24 1 3.3836 7.7040 -1.7281 25 1 5.3346 8.0062 -0.3205 26 1 5.4764 6.6243 -2.3081 27 6 1.1191 3.4892 1.0392 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8901 31 1 1.8934 -0.5138 -0.8900 32 1 1.8933 -0.5137 0.8900 33 1 0.9150 -0.1329 -1.7826 34 1 0.9226 -1.4309 -3.8683 35 1 1.7295 -2.8287 -5.1926 36 1 0.5847 -1.6733 -5.9155 37 1 1.6936 -2.5978 -6.9569 38 1 4.7467 2.9575 -5.1142 39 1 5.8927 1.8029 -4.3919 40 1 5.9610 2.1521 -6.1361 41 1 4.1906 2.2229 -3.2429 42 1 1.6356 1.6099 2.0930 43 1 3.3074 3.3569 2.4997 44 1 4.0548 2.7500 0.9572 45 1 5.9682 5.0477 0.3016 46 1 0.4084 3.4548 0.2134 47 1 0.6807 3.8646 1.9639 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000957343287.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:32:36 Heat of formation + Delta-G solvation = 33.653533 kcal Electronic energy + Delta-G solvation = -30729.500391 eV Core-core repulsion = 26689.931895 eV Total energy + Delta-G solvation = -4039.568496 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.99569 -41.04553 -39.49185 -38.70173 -37.29803 -36.39136 -33.93413 -31.70213 -31.41158 -30.87639 -29.25607 -28.30403 -28.11697 -26.43664 -25.38546 -24.40034 -23.45587 -23.21661 -21.82319 -19.98924 -19.08324 -18.60486 -18.51310 -17.74696 -17.29579 -17.10954 -16.71761 -16.49119 -16.20210 -16.10371 -15.80922 -15.51737 -15.48400 -15.35029 -14.53539 -14.42995 -14.16660 -14.01873 -13.66120 -13.35313 -13.26068 -13.14423 -12.94948 -12.86500 -12.79361 -12.46682 -12.41198 -12.38387 -12.25936 -12.08558 -11.90246 -11.85559 -11.55555 -11.38642 -11.27482 -10.68790 -10.07445 -9.80262 -9.25700 -8.85169 -8.42080 -7.65167 -4.87756 -0.04602 0.25894 1.39303 1.40990 1.48826 2.11766 2.17196 2.27926 2.31522 2.58646 2.87141 3.51576 3.59245 3.71975 3.75636 3.93417 3.96260 4.08764 4.13213 4.22488 4.31230 4.33430 4.46229 4.48173 4.49069 4.49498 4.59934 4.61646 4.68289 4.72822 4.80625 4.86680 4.92566 5.00072 5.04420 5.09554 5.16978 5.32604 5.34690 5.43779 5.51309 5.55547 5.69050 5.99845 6.10125 6.23077 6.51482 6.80794 7.13865 7.80016 7.89375 8.82749 9.53848 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.011166 B = 0.004941 C = 0.003625 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2507.008114 B = 5665.079979 C = 7721.874853 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.068 3.932 3 N -0.594 5.594 4 C 0.501 3.499 5 O -0.468 6.468 6 C -0.136 4.136 7 C -0.107 4.107 8 C -0.169 4.169 9 C 0.112 3.888 10 O -0.327 6.327 11 C 0.013 3.987 12 C 0.069 3.931 13 O -0.321 6.321 14 C 0.025 3.975 15 C -0.136 4.136 16 C 0.127 3.873 17 C 0.154 3.846 18 N -0.607 5.607 19 C -0.170 4.170 20 H 0.056 0.944 21 C -0.054 4.054 22 N -0.946 5.946 23 Si 0.947 3.053 24 H -0.276 1.276 25 H -0.295 1.295 26 H -0.303 1.303 27 C 0.104 3.896 28 H 0.101 0.899 29 H 0.064 0.936 30 H 0.053 0.947 31 H 0.112 0.888 32 H 0.088 0.912 33 H 0.193 0.807 34 H 0.184 0.816 35 H 0.075 0.925 36 H 0.071 0.929 37 H 0.117 0.883 38 H 0.044 0.956 39 H 0.049 0.951 40 H 0.130 0.870 41 H 0.114 0.886 42 H 0.128 0.872 43 H 0.020 0.980 44 H 0.035 0.965 45 H 0.232 0.768 46 H 0.034 0.966 47 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.250 -20.867 -7.220 24.781 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.053 4.053 3 N -0.329 5.329 4 C 0.288 3.712 5 O -0.339 6.339 6 C -0.140 4.140 7 C -0.124 4.124 8 C -0.187 4.187 9 C 0.066 3.934 10 O -0.241 6.241 11 C -0.081 4.081 12 C 0.024 3.976 13 O -0.235 6.235 14 C -0.070 4.070 15 C -0.156 4.156 16 C 0.022 3.978 17 C 0.028 3.972 18 N -0.332 5.332 19 C -0.299 4.299 20 H 0.074 0.926 21 C -0.246 4.246 22 N -0.598 5.598 23 Si 0.780 3.220 24 H -0.201 1.201 25 H -0.223 1.223 26 H -0.231 1.231 27 C -0.022 4.022 28 H 0.120 0.880 29 H 0.083 0.917 30 H 0.072 0.928 31 H 0.129 0.871 32 H 0.106 0.894 33 H 0.209 0.791 34 H 0.201 0.799 35 H 0.093 0.907 36 H 0.090 0.910 37 H 0.135 0.865 38 H 0.063 0.937 39 H 0.068 0.932 40 H 0.148 0.852 41 H 0.132 0.868 42 H 0.146 0.854 43 H 0.038 0.962 44 H 0.054 0.946 45 H 0.042 0.958 46 H 0.053 0.947 47 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -10.650 -20.084 -7.733 24.012 hybrid contribution 0.986 1.762 -0.266 2.036 sum -9.664 -18.322 -7.999 22.205 Atomic orbital electron populations 1.22274 0.94087 1.04129 1.02566 1.22678 0.95823 0.81357 1.05393 1.47445 1.62135 1.13937 1.09381 1.18961 0.80812 0.87207 0.84269 1.91435 1.40465 1.18028 1.83942 1.19941 0.99583 0.99489 0.94974 1.22491 0.98579 0.92719 0.98642 1.21443 1.00503 1.04171 0.92589 1.18623 0.94849 0.91804 0.88123 1.86109 1.56781 1.47067 1.34122 1.23479 0.91135 0.88424 1.05084 1.18305 0.93451 0.96715 0.89155 1.86079 1.44446 1.53120 1.39859 1.23201 0.91786 0.87989 1.04037 1.21041 1.01268 1.00222 0.93021 1.22679 0.96553 0.91203 0.87364 1.22418 0.95443 0.86756 0.92621 1.45783 1.02028 1.29707 1.55708 1.18783 0.90917 0.99493 1.20753 0.92612 1.25019 0.95718 1.01123 1.02728 1.69983 0.98364 1.40964 1.50466 0.85432 0.77602 0.80562 0.78444 1.20091 1.22301 1.23131 1.23169 0.89958 0.91451 0.97646 0.88030 0.91691 0.92773 0.87075 0.89407 0.79097 0.79911 0.90665 0.91045 0.86481 0.93717 0.93186 0.85161 0.86769 0.85430 0.96225 0.94618 0.95849 0.94748 0.92402 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.53 9.06 71.98 0.65 -1.88 16 2 C 0.07 1.40 5.59 86.38 0.48 1.88 16 3 N -0.59 -19.89 2.77 -807.17 -2.24 -22.13 16 4 C 0.50 21.29 7.03 86.71 0.61 21.90 16 5 O -0.47 -25.84 10.07 -3.99 -0.04 -25.89 16 6 C -0.14 -4.82 5.60 -20.09 -0.11 -4.94 16 7 C -0.11 -2.60 7.49 22.52 0.17 -2.43 16 8 C -0.17 -3.46 9.01 22.31 0.20 -3.25 16 9 C 0.11 3.04 6.71 22.69 0.15 3.19 16 10 O -0.33 -7.85 10.26 -77.19 -0.79 -8.64 16 11 C 0.01 0.15 9.81 113.37 1.11 1.26 16 12 C 0.07 2.32 6.69 22.53 0.15 2.47 16 13 O -0.32 -10.65 10.28 -79.56 -0.82 -11.47 16 14 C 0.02 0.71 9.81 113.37 1.11 1.82 16 15 C -0.14 -5.16 8.57 22.61 0.19 -4.96 16 16 C 0.13 4.58 4.49 46.74 0.21 4.79 16 17 C 0.15 7.68 6.46 86.44 0.56 8.24 16 18 N -0.61 -32.92 2.10 -716.66 -1.50 -34.42 16 19 C -0.17 -10.46 8.71 84.03 0.73 -9.73 16 20 H 0.06 3.44 7.83 -2.91 -0.02 3.42 16 21 C -0.05 -3.38 5.01 84.86 0.42 -2.96 16 22 N -0.95 -61.91 11.39 21.65 0.25 -61.66 16 23 Si 0.95 51.10 29.55 68.60 2.03 53.13 16 24 H -0.28 -14.25 7.11 99.48 0.71 -13.55 16 25 H -0.30 -15.66 7.11 99.48 0.71 -14.95 16 26 H -0.30 -16.51 7.11 99.48 0.71 -15.80 16 27 C 0.10 4.29 8.42 86.48 0.73 5.02 16 28 H 0.10 0.78 8.14 -2.39 -0.02 0.76 16 29 H 0.06 1.02 8.05 -2.39 -0.02 1.00 16 30 H 0.05 0.92 7.03 -2.39 -0.02 0.90 16 31 H 0.11 2.16 4.00 -3.11 -0.01 2.15 16 32 H 0.09 1.49 8.14 -2.39 -0.02 1.47 16 33 H 0.19 3.51 2.38 -2.91 -0.01 3.50 16 34 H 0.18 1.96 6.27 -2.91 -0.02 1.95 16 35 H 0.07 0.60 7.65 -2.38 -0.02 0.58 16 36 H 0.07 0.62 7.65 -2.39 -0.02 0.60 16 37 H 0.12 0.92 8.14 -2.39 -0.02 0.90 16 38 H 0.04 1.40 7.65 -2.38 -0.02 1.38 16 39 H 0.05 1.50 7.67 -2.39 -0.02 1.48 16 40 H 0.13 2.82 8.14 -2.39 -0.02 2.80 16 41 H 0.11 5.01 6.04 -2.91 -0.02 4.99 16 42 H 0.13 3.38 8.08 -2.39 -0.02 3.36 16 43 H 0.02 1.00 8.14 -2.39 -0.02 0.98 16 44 H 0.04 2.09 6.37 -2.39 -0.02 2.07 16 45 H 0.23 15.01 8.31 -92.71 -0.77 14.24 16 46 H 0.03 1.43 8.14 -2.38 -0.02 1.41 16 47 H 0.06 2.16 8.14 -2.39 -0.02 2.14 16 Total: -1.00 -88.13 368.18 5.25 -82.88 By element: Atomic # 1 Polarization: 6.78 SS G_CDS: 0.99 Total: 7.78 kcal Atomic # 6 Polarization: 13.05 SS G_CDS: 7.38 Total: 20.43 kcal Atomic # 7 Polarization: -114.72 SS G_CDS: -3.49 Total: -118.21 kcal Atomic # 8 Polarization: -44.35 SS G_CDS: -1.65 Total: -46.00 kcal Atomic # 14 Polarization: 51.10 SS G_CDS: 2.03 Total: 53.13 kcal Total: -88.13 5.25 -82.88 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000957343287.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.534 kcal (2) G-P(sol) polarization free energy of solvation -88.133 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.400 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.253 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.880 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.654 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds