Wall clock time and date at job start Tue Mar 31 2020 18:32:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46500 * 109.47419 * 2 1 4 4 C 1.34770 * 120.00228 * 105.70066 * 3 2 1 5 5 O 1.21593 * 119.99906 * 186.74051 * 4 3 2 6 6 C 1.47541 * 120.00039 * 6.73769 * 4 3 2 7 7 C 1.39712 * 120.16563 * 325.87099 * 6 4 3 8 8 C 1.38238 * 119.84878 * 179.97438 * 7 6 4 9 9 O 1.35989 * 119.90756 * 180.02562 * 8 7 6 10 10 C 1.42899 * 116.99891 * 180.02562 * 9 8 7 11 11 C 1.38962 * 120.18351 * 359.97438 * 8 7 6 12 12 C 1.38024 * 120.34186 * 359.72928 * 11 8 7 13 13 C 1.38681 * 120.14673 * 0.55325 * 12 11 8 14 14 O 1.35724 * 120.09847 * 179.72112 * 13 12 11 15 15 C 1.42897 * 117.00114 * 359.72648 * 14 13 12 16 16 C 1.46506 * 119.99385 * 285.70142 * 3 2 1 17 17 C 1.53943 * 113.74038 * 222.78370 * 16 3 2 18 18 N 1.47813 * 86.03730 * 222.08751 * 17 16 3 19 19 C 1.36934 * 134.45416 * 204.64454 * 18 17 16 20 20 H 1.07999 * 119.99786 * 179.87142 * 19 18 17 21 21 C 1.38817 * 120.00355 * 359.87048 * 19 18 17 22 22 N 1.31621 * 119.99369 * 359.97438 * 21 19 18 23 23 Si 1.86788 * 120.00235 * 179.97438 * 21 19 18 24 24 H 1.48505 * 109.47506 * 89.99707 * 23 21 19 25 25 H 1.48505 * 109.47250 * 209.99936 * 23 21 19 26 26 H 1.48500 * 109.47298 * 329.99676 * 23 21 19 27 27 C 1.47579 * 91.05071 * 24.55283 * 18 17 16 28 28 H 1.08998 * 109.47182 * 180.02562 * 1 2 3 29 29 H 1.08993 * 109.47386 * 300.00449 * 1 2 3 30 30 H 1.09000 * 109.46494 * 60.00584 * 1 2 3 31 31 H 1.08996 * 109.47166 * 239.99075 * 2 1 3 32 32 H 1.09004 * 109.46944 * 119.99560 * 2 1 3 33 33 H 1.07998 * 120.07806 * 359.95121 * 7 6 4 34 34 H 1.09006 * 109.46941 * 179.97438 * 10 9 8 35 35 H 1.09008 * 109.46751 * 299.99034 * 10 9 8 36 36 H 1.08988 * 109.47735 * 59.99333 * 10 9 8 37 37 H 1.08008 * 119.82762 * 180.02562 * 11 8 7 38 38 H 1.08002 * 119.93191 * 180.30329 * 12 11 8 39 39 H 1.09002 * 109.47106 * 300.00035 * 15 14 13 40 40 H 1.08998 * 109.47031 * 59.99798 * 15 14 13 41 41 H 1.09003 * 109.47553 * 180.02562 * 15 14 13 42 42 H 1.08994 * 112.94424 * 354.38386 * 16 3 2 43 43 H 1.09007 * 113.77147 * 336.35599 * 17 16 3 44 44 H 1.09006 * 113.76612 * 107.74634 * 17 16 3 45 45 H 0.97002 * 119.99508 * 179.97438 * 22 21 19 46 46 H 1.08998 * 113.76603 * 221.15111 * 27 18 17 47 47 H 1.08996 * 113.77173 * 89.75445 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.5409 1.9112 1.1236 5 8 2.8329 3.0910 1.1605 6 6 2.7584 1.0600 2.3089 7 6 1.8759 0.0153 2.5945 8 6 2.0862 -0.7785 3.7065 9 8 1.2282 -1.7961 3.9853 10 6 1.5042 -2.5766 5.1501 11 6 3.1727 -0.5403 4.5395 12 6 4.0528 0.4858 4.2613 13 6 3.8518 1.2945 3.1527 14 8 4.7148 2.3068 2.8832 15 6 5.8065 2.4868 3.7876 16 6 1.9389 2.1862 -1.2215 17 6 3.2044 3.0173 -1.4996 18 7 2.2809 4.1099 -1.8715 19 6 2.3764 5.2144 -2.6753 20 1 1.5308 5.8771 -2.7850 21 6 3.5602 5.4823 -3.3491 22 7 4.5909 4.6749 -3.2149 23 14 3.6902 6.9886 -4.4461 24 1 4.1741 8.1428 -3.6468 25 1 4.6451 6.7159 -5.5502 26 1 2.3547 7.3045 -5.0134 27 6 1.2147 3.5313 -1.0312 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3634 0.5139 0.8899 30 1 -0.3632 0.5138 -0.8901 31 1 1.8934 -0.5140 -0.8899 32 1 1.8933 -0.5138 0.8901 33 1 1.0310 -0.1715 1.9482 34 1 0.7453 -3.3518 5.2562 35 1 2.4861 -3.0399 5.0526 36 1 1.4917 -1.9335 6.0299 37 1 3.3318 -1.1644 5.4066 38 1 4.8978 0.6620 4.9105 39 1 5.4209 2.6888 4.7869 40 1 6.4138 1.5819 3.8086 41 1 6.4171 3.3271 3.4574 42 1 1.5891 1.6175 -2.0831 43 1 3.7969 3.2269 -0.6089 44 1 3.8019 2.6432 -2.3310 45 1 5.4180 4.8619 -3.6861 46 1 0.2263 3.5668 -1.4894 47 1 1.2213 3.8922 -0.0027 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000957372241.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:32:40 Heat of formation + Delta-G solvation = 22.525437 kcal Electronic energy + Delta-G solvation = -30051.197750 eV Core-core repulsion = 26011.146703 eV Total energy + Delta-G solvation = -4040.051047 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.00505 -39.60312 -39.02986 -36.93272 -36.22416 -35.26728 -32.14268 -31.26874 -30.29898 -29.71048 -27.76441 -27.14998 -26.98030 -24.52633 -24.22771 -23.38095 -22.53294 -21.99224 -20.31206 -18.99979 -17.92079 -17.43212 -16.95297 -16.66465 -16.32369 -16.03679 -15.63665 -15.46757 -15.02776 -14.85136 -14.57023 -14.43961 -14.07175 -13.65716 -13.37844 -13.14261 -12.98764 -12.87289 -12.59723 -12.33050 -12.23691 -12.12098 -11.75387 -11.66123 -11.51010 -11.28430 -11.17525 -11.05253 -10.85345 -10.75246 -10.54805 -10.43971 -9.96340 -9.85537 -9.33703 -9.26520 -8.95253 -8.49538 -7.97424 -7.81382 -6.62629 -5.58582 -2.88574 0.77812 1.27485 2.97974 3.09085 3.31190 3.36440 3.50215 3.54663 3.56162 3.78385 4.44228 4.51655 4.63293 4.77697 4.84795 4.87415 4.92944 5.02953 5.09112 5.12456 5.16553 5.24539 5.28173 5.45750 5.49862 5.50617 5.55561 5.67494 5.71251 5.81513 5.84242 5.91307 5.98138 6.01227 6.06594 6.27779 6.31520 6.51476 6.76248 6.81571 7.09271 7.13675 7.38861 7.46408 7.72999 7.79890 7.95680 8.15899 8.75315 9.22677 9.88737 10.81655 11.58853 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.017290 B = 0.003342 C = 0.002900 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1619.072336 B = 8375.585350 C = 9651.196682 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.068 3.932 3 N -0.596 5.596 4 C 0.555 3.445 5 O -0.489 6.489 6 C -0.120 4.120 7 C -0.104 4.104 8 C 0.077 3.923 9 O -0.316 6.316 10 C 0.028 3.972 11 C -0.148 4.148 12 C -0.181 4.181 13 C 0.148 3.852 14 O -0.284 6.284 15 C 0.025 3.975 16 C 0.092 3.908 17 C 0.157 3.843 18 N -0.604 5.604 19 C -0.213 4.213 20 H 0.078 0.922 21 C -0.011 4.011 22 N -0.920 5.920 23 Si 0.911 3.089 24 H -0.290 1.290 25 H -0.291 1.291 26 H -0.282 1.282 27 C 0.112 3.888 28 H 0.065 0.935 29 H 0.059 0.941 30 H 0.066 0.934 31 H 0.072 0.928 32 H 0.104 0.896 33 H 0.166 0.834 34 H 0.099 0.901 35 H 0.053 0.947 36 H 0.053 0.947 37 H 0.132 0.868 38 H 0.136 0.864 39 H 0.053 0.947 40 H 0.053 0.947 41 H 0.103 0.897 42 H 0.103 0.897 43 H 0.054 0.946 44 H 0.065 0.935 45 H 0.251 0.749 46 H 0.035 0.965 47 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.587 -18.410 18.682 26.472 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.055 4.055 3 N -0.330 5.330 4 C 0.342 3.658 5 O -0.363 6.363 6 C -0.124 4.124 7 C -0.122 4.122 8 C 0.032 3.968 9 O -0.230 6.230 10 C -0.067 4.067 11 C -0.167 4.167 12 C -0.200 4.200 13 C 0.101 3.899 14 O -0.195 6.195 15 C -0.070 4.070 16 C -0.011 4.011 17 C 0.031 3.969 18 N -0.330 5.330 19 C -0.341 4.341 20 H 0.096 0.904 21 C -0.207 4.207 22 N -0.568 5.568 23 Si 0.741 3.259 24 H -0.218 1.218 25 H -0.218 1.218 26 H -0.207 1.207 27 C -0.015 4.015 28 H 0.084 0.916 29 H 0.078 0.922 30 H 0.085 0.915 31 H 0.090 0.910 32 H 0.122 0.878 33 H 0.183 0.817 34 H 0.117 0.883 35 H 0.072 0.928 36 H 0.072 0.928 37 H 0.149 0.851 38 H 0.153 0.847 39 H 0.072 0.928 40 H 0.071 0.929 41 H 0.121 0.879 42 H 0.121 0.879 43 H 0.072 0.928 44 H 0.084 0.916 45 H 0.061 0.939 46 H 0.053 0.947 47 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -3.425 -17.433 18.176 25.417 hybrid contribution 0.502 0.593 0.030 0.777 sum -2.923 -16.841 18.206 24.972 Atomic orbital electron populations 1.22223 0.95918 1.02022 1.03006 1.22397 0.94551 0.84098 1.04425 1.47964 1.60904 1.13089 1.11065 1.17821 0.78576 0.87250 0.82169 1.90895 1.48592 1.14898 1.81931 1.19294 0.96252 0.98739 0.98139 1.21111 1.01408 0.93532 0.96187 1.18688 0.91370 0.91122 0.95590 1.86082 1.49476 1.42177 1.45289 1.23025 1.02326 0.94798 0.86567 1.21121 0.95339 0.99777 1.00489 1.20985 1.02282 0.98047 0.98678 1.18896 0.90080 0.88221 0.92737 1.86370 1.36274 1.46886 1.49989 1.23119 0.88045 1.02477 0.93373 1.24014 1.02212 0.90380 0.84506 1.22703 0.91252 0.84601 0.98353 1.45681 1.10416 1.27303 1.49624 1.18990 0.97827 0.99859 1.17437 0.90403 1.24767 0.95866 0.99074 1.01017 1.69847 1.02928 1.37880 1.46112 0.86134 0.77218 0.82579 0.79934 1.21770 1.21780 1.20737 1.22952 0.92569 0.90316 0.95695 0.91586 0.92243 0.91541 0.90967 0.87808 0.81712 0.88287 0.92795 0.92835 0.85056 0.84652 0.92827 0.92862 0.87872 0.87936 0.92816 0.91636 0.93889 0.94730 0.93061 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.86 9.24 37.16 0.34 -1.52 16 2 C 0.07 0.86 5.62 -4.04 -0.02 0.84 16 3 N -0.60 -10.41 2.77 -169.12 -0.47 -10.88 16 4 C 0.56 10.71 6.69 -12.47 -0.08 10.63 16 5 O -0.49 -11.70 11.63 -12.87 -0.15 -11.85 16 6 C -0.12 -1.89 5.53 -104.86 -0.58 -2.47 16 7 C -0.10 -1.32 7.36 -39.03 -0.29 -1.60 16 8 C 0.08 0.85 6.68 -39.31 -0.26 0.59 16 9 O -0.32 -3.07 10.49 -19.71 -0.21 -3.28 16 10 C 0.03 0.16 9.81 101.05 0.99 1.15 16 11 C -0.15 -1.45 9.02 -39.39 -0.36 -1.80 16 12 C -0.18 -2.00 9.02 -39.50 -0.36 -2.35 16 13 C 0.15 2.21 6.66 -38.72 -0.26 1.95 16 14 O -0.28 -4.69 9.10 -37.03 -0.34 -5.03 16 15 C 0.03 0.27 9.81 101.05 0.99 1.26 16 16 C 0.09 1.92 4.41 -70.14 -0.31 1.61 16 17 C 0.16 4.15 6.79 -2.84 -0.02 4.13 16 18 N -0.60 -17.12 3.70 -177.88 -0.66 -17.78 16 19 C -0.21 -6.46 10.70 -15.06 -0.16 -6.62 16 20 H 0.08 2.27 7.83 -52.49 -0.41 1.86 16 21 C -0.01 -0.34 5.50 -17.43 -0.10 -0.43 16 22 N -0.92 -29.07 11.39 55.49 0.63 -28.44 16 23 Si 0.91 23.44 29.55 -169.99 -5.02 18.41 16 24 H -0.29 -7.49 7.11 56.52 0.40 -7.08 16 25 H -0.29 -7.47 7.11 56.52 0.40 -7.07 16 26 H -0.28 -7.00 7.11 56.52 0.40 -6.60 16 27 C 0.11 2.62 8.27 -2.96 -0.02 2.60 16 28 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 29 H 0.06 0.66 7.28 -51.93 -0.38 0.28 16 30 H 0.07 0.77 8.06 -51.93 -0.42 0.35 16 31 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16 32 H 0.10 1.21 3.66 -53.55 -0.20 1.01 16 33 H 0.17 1.90 3.52 -52.49 -0.18 1.71 16 34 H 0.10 0.37 8.14 -51.93 -0.42 -0.05 16 35 H 0.05 0.25 7.65 -51.92 -0.40 -0.15 16 36 H 0.05 0.26 7.66 -51.94 -0.40 -0.14 16 37 H 0.13 0.88 6.27 -52.48 -0.33 0.55 16 38 H 0.14 1.12 6.29 -52.49 -0.33 0.79 16 39 H 0.05 0.47 7.67 -51.93 -0.40 0.08 16 40 H 0.05 0.46 7.65 -51.93 -0.40 0.06 16 41 H 0.10 1.06 8.14 -51.93 -0.42 0.64 16 42 H 0.10 1.96 8.07 -51.93 -0.42 1.54 16 43 H 0.05 1.56 5.77 -51.93 -0.30 1.26 16 44 H 0.07 1.87 7.17 -51.93 -0.37 1.49 16 45 H 0.25 7.65 8.31 -40.82 -0.34 7.31 16 46 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 47 H 0.05 1.29 6.25 -51.93 -0.32 0.96 16 LS Contribution 370.88 15.07 5.59 5.59 Total: -1.00 -38.01 370.88 -7.62 -45.62 By element: Atomic # 1 Polarization: 6.18 SS G_CDS: -6.50 Total: -0.32 kcal Atomic # 6 Polarization: 8.44 SS G_CDS: -0.49 Total: 7.95 kcal Atomic # 7 Polarization: -56.61 SS G_CDS: -0.50 Total: -57.10 kcal Atomic # 8 Polarization: -19.46 SS G_CDS: -0.69 Total: -20.16 kcal Atomic # 14 Polarization: 23.44 SS G_CDS: -5.02 Total: 18.41 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -38.01 -7.62 -45.62 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000957372241.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.150 kcal (2) G-P(sol) polarization free energy of solvation -38.009 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.141 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.615 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.625 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.525 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds