Wall clock time and date at job start Tue Mar 31 2020 18:32:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46500 * 109.47419 * 2 1 4 4 C 1.34770 * 120.00228 * 105.70066 * 3 2 1 5 5 O 1.21593 * 119.99906 * 186.74051 * 4 3 2 6 6 C 1.47541 * 120.00039 * 6.73769 * 4 3 2 7 7 C 1.39712 * 120.16563 * 325.87099 * 6 4 3 8 8 C 1.38238 * 119.84878 * 179.97438 * 7 6 4 9 9 O 1.35989 * 119.90756 * 180.02562 * 8 7 6 10 10 C 1.42899 * 116.99891 * 180.02562 * 9 8 7 11 11 C 1.38962 * 120.18351 * 359.97438 * 8 7 6 12 12 C 1.38024 * 120.34186 * 359.72928 * 11 8 7 13 13 C 1.38681 * 120.14673 * 0.55325 * 12 11 8 14 14 O 1.35724 * 120.09847 * 179.72112 * 13 12 11 15 15 C 1.42897 * 117.00114 * 359.72648 * 14 13 12 16 16 C 1.46506 * 119.99385 * 285.70142 * 3 2 1 17 17 C 1.53943 * 113.74038 * 222.78370 * 16 3 2 18 18 N 1.47813 * 86.03730 * 222.08751 * 17 16 3 19 19 C 1.36934 * 134.45416 * 204.64454 * 18 17 16 20 20 H 1.07999 * 119.99786 * 179.87142 * 19 18 17 21 21 C 1.38817 * 120.00355 * 359.87048 * 19 18 17 22 22 N 1.31621 * 119.99369 * 359.97438 * 21 19 18 23 23 Si 1.86788 * 120.00235 * 179.97438 * 21 19 18 24 24 H 1.48505 * 109.47506 * 89.99707 * 23 21 19 25 25 H 1.48505 * 109.47250 * 209.99936 * 23 21 19 26 26 H 1.48500 * 109.47298 * 329.99676 * 23 21 19 27 27 C 1.47579 * 91.05071 * 24.55283 * 18 17 16 28 28 H 1.08998 * 109.47182 * 180.02562 * 1 2 3 29 29 H 1.08993 * 109.47386 * 300.00449 * 1 2 3 30 30 H 1.09000 * 109.46494 * 60.00584 * 1 2 3 31 31 H 1.08996 * 109.47166 * 239.99075 * 2 1 3 32 32 H 1.09004 * 109.46944 * 119.99560 * 2 1 3 33 33 H 1.07998 * 120.07806 * 359.95121 * 7 6 4 34 34 H 1.09006 * 109.46941 * 179.97438 * 10 9 8 35 35 H 1.09008 * 109.46751 * 299.99034 * 10 9 8 36 36 H 1.08988 * 109.47735 * 59.99333 * 10 9 8 37 37 H 1.08008 * 119.82762 * 180.02562 * 11 8 7 38 38 H 1.08002 * 119.93191 * 180.30329 * 12 11 8 39 39 H 1.09002 * 109.47106 * 300.00035 * 15 14 13 40 40 H 1.08998 * 109.47031 * 59.99798 * 15 14 13 41 41 H 1.09003 * 109.47553 * 180.02562 * 15 14 13 42 42 H 1.08994 * 112.94424 * 354.38386 * 16 3 2 43 43 H 1.09007 * 113.77147 * 336.35599 * 17 16 3 44 44 H 1.09006 * 113.76612 * 107.74634 * 17 16 3 45 45 H 0.97002 * 119.99508 * 179.97438 * 22 21 19 46 46 H 1.08998 * 113.76603 * 221.15111 * 27 18 17 47 47 H 1.08996 * 113.77173 * 89.75445 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.5409 1.9112 1.1236 5 8 2.8329 3.0910 1.1605 6 6 2.7584 1.0600 2.3089 7 6 1.8759 0.0153 2.5945 8 6 2.0862 -0.7785 3.7065 9 8 1.2282 -1.7961 3.9853 10 6 1.5042 -2.5766 5.1501 11 6 3.1727 -0.5403 4.5395 12 6 4.0528 0.4858 4.2613 13 6 3.8518 1.2945 3.1527 14 8 4.7148 2.3068 2.8832 15 6 5.8065 2.4868 3.7876 16 6 1.9389 2.1862 -1.2215 17 6 3.2044 3.0173 -1.4996 18 7 2.2809 4.1099 -1.8715 19 6 2.3764 5.2144 -2.6753 20 1 1.5308 5.8771 -2.7850 21 6 3.5602 5.4823 -3.3491 22 7 4.5909 4.6749 -3.2149 23 14 3.6902 6.9886 -4.4461 24 1 4.1741 8.1428 -3.6468 25 1 4.6451 6.7159 -5.5502 26 1 2.3547 7.3045 -5.0134 27 6 1.2147 3.5313 -1.0312 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3634 0.5139 0.8899 30 1 -0.3632 0.5138 -0.8901 31 1 1.8934 -0.5140 -0.8899 32 1 1.8933 -0.5138 0.8901 33 1 1.0310 -0.1715 1.9482 34 1 0.7453 -3.3518 5.2562 35 1 2.4861 -3.0399 5.0526 36 1 1.4917 -1.9335 6.0299 37 1 3.3318 -1.1644 5.4066 38 1 4.8978 0.6620 4.9105 39 1 5.4209 2.6888 4.7869 40 1 6.4138 1.5819 3.8086 41 1 6.4171 3.3271 3.4574 42 1 1.5891 1.6175 -2.0831 43 1 3.7969 3.2269 -0.6089 44 1 3.8019 2.6432 -2.3310 45 1 5.4180 4.8619 -3.6861 46 1 0.2263 3.5668 -1.4894 47 1 1.2213 3.8922 -0.0027 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000957372241.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:32:40 Heat of formation + Delta-G solvation = -3.918905 kcal Electronic energy + Delta-G solvation = -30052.344463 eV Core-core repulsion = 26011.146703 eV Total energy + Delta-G solvation = -4041.197760 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.13150 -40.88691 -39.95156 -38.57679 -37.42190 -36.53467 -34.22029 -32.43129 -31.47340 -30.65416 -29.34136 -28.28008 -27.74955 -26.56660 -25.74476 -24.70195 -23.57225 -23.18277 -21.85205 -20.38800 -18.89043 -18.75232 -18.51378 -17.90860 -17.63021 -17.08674 -16.83916 -16.64198 -16.40483 -16.13992 -15.89124 -15.68245 -15.61154 -15.19595 -14.51282 -14.26151 -14.18729 -13.91308 -13.72657 -13.70470 -13.52784 -13.35728 -13.02582 -12.94859 -12.81909 -12.66769 -12.49899 -12.45597 -12.43862 -12.03987 -11.95893 -11.85999 -11.68308 -11.46604 -11.30475 -10.96388 -10.50907 -9.99772 -9.49138 -8.88278 -8.75674 -7.89341 -5.23319 -0.19247 0.35547 1.41844 1.46639 1.54994 1.80447 1.98628 2.30102 2.45521 2.49989 2.70072 3.28554 3.49035 3.54218 3.68804 3.85184 3.95011 4.06081 4.07573 4.19774 4.28340 4.34167 4.36574 4.40423 4.49604 4.52055 4.58313 4.61150 4.67313 4.71794 4.76259 4.84583 4.87679 4.92902 4.99099 5.05436 5.14485 5.17286 5.23844 5.31445 5.40758 5.43591 5.48959 5.89272 5.92859 6.33240 6.48234 6.57850 6.90869 7.31876 7.59797 8.58562 9.28142 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.017290 B = 0.003342 C = 0.002900 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1619.072336 B = 8375.585350 C = 9651.196682 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.063 3.937 3 N -0.595 5.595 4 C 0.549 3.451 5 O -0.551 6.551 6 C -0.150 4.150 7 C -0.107 4.107 8 C 0.083 3.917 9 O -0.326 6.326 10 C 0.015 3.985 11 C -0.133 4.133 12 C -0.171 4.171 13 C 0.122 3.878 14 O -0.332 6.332 15 C 0.017 3.983 16 C 0.128 3.872 17 C 0.157 3.843 18 N -0.631 5.631 19 C -0.236 4.236 20 H 0.084 0.916 21 C -0.072 4.072 22 N -0.955 5.955 23 Si 0.986 3.014 24 H -0.290 1.290 25 H -0.289 1.289 26 H -0.263 1.263 27 C 0.114 3.886 28 H 0.099 0.901 29 H 0.054 0.946 30 H 0.058 0.942 31 H 0.086 0.914 32 H 0.119 0.881 33 H 0.174 0.826 34 H 0.118 0.882 35 H 0.068 0.932 36 H 0.065 0.935 37 H 0.172 0.828 38 H 0.166 0.834 39 H 0.075 0.925 40 H 0.077 0.923 41 H 0.097 0.903 42 H 0.128 0.872 43 H 0.019 0.981 44 H 0.036 0.964 45 H 0.248 0.752 46 H 0.058 0.942 47 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.846 -21.152 20.433 29.806 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.058 4.058 3 N -0.327 5.327 4 C 0.339 3.661 5 O -0.429 6.429 6 C -0.154 4.154 7 C -0.125 4.125 8 C 0.038 3.962 9 O -0.241 6.241 10 C -0.079 4.079 11 C -0.151 4.151 12 C -0.190 4.190 13 C 0.075 3.925 14 O -0.245 6.245 15 C -0.077 4.077 16 C 0.024 3.976 17 C 0.030 3.970 18 N -0.358 5.358 19 C -0.364 4.364 20 H 0.101 0.899 21 C -0.264 4.264 22 N -0.603 5.603 23 Si 0.813 3.187 24 H -0.217 1.217 25 H -0.215 1.215 26 H -0.188 1.188 27 C -0.012 4.012 28 H 0.117 0.883 29 H 0.073 0.927 30 H 0.077 0.923 31 H 0.104 0.896 32 H 0.136 0.864 33 H 0.191 0.809 34 H 0.137 0.863 35 H 0.087 0.913 36 H 0.084 0.916 37 H 0.189 0.811 38 H 0.183 0.817 39 H 0.093 0.907 40 H 0.095 0.905 41 H 0.116 0.884 42 H 0.146 0.854 43 H 0.037 0.963 44 H 0.055 0.945 45 H 0.057 0.943 46 H 0.076 0.924 47 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges -4.733 -20.248 19.960 28.823 hybrid contribution 0.887 1.315 -0.325 1.619 sum -3.847 -18.933 19.634 27.546 Atomic orbital electron populations 1.22189 0.93976 1.03993 1.02392 1.22749 0.96046 0.81137 1.05864 1.47966 1.60663 1.14663 1.09406 1.18508 0.77211 0.87014 0.83409 1.90849 1.51079 1.17685 1.83296 1.19089 0.98505 1.00153 0.97656 1.21069 1.01002 0.93087 0.97339 1.18718 0.91667 0.90972 0.94890 1.86084 1.49177 1.41785 1.47031 1.23395 1.04008 0.95051 0.85457 1.21570 0.93738 0.98942 1.00857 1.21291 1.03199 0.97122 0.97349 1.19239 0.90135 0.88945 0.94148 1.86304 1.37861 1.48137 1.52233 1.23360 0.87255 1.03543 0.93564 1.23359 0.97431 0.90134 0.86712 1.22462 0.92755 0.86066 0.95680 1.46104 1.12220 1.27407 1.50038 1.19457 0.98329 1.00827 1.17786 0.89866 1.25749 0.95429 1.02434 1.02823 1.70075 1.03301 1.39770 1.47196 0.84970 0.77867 0.78178 0.77639 1.21747 1.21505 1.18755 1.22976 0.92773 0.91356 0.94085 0.88260 0.92708 0.92314 0.89611 0.86370 0.80934 0.86335 0.91312 0.91607 0.81076 0.81708 0.90696 0.90486 0.88413 0.85400 0.96282 0.94531 0.94346 0.92431 0.94899 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.23 9.24 71.98 0.66 -2.56 16 2 C 0.06 1.51 5.62 86.38 0.49 1.99 16 3 N -0.59 -21.28 2.77 -807.23 -2.24 -23.52 16 4 C 0.55 22.42 6.69 86.70 0.58 23.00 16 5 O -0.55 -28.60 11.63 13.35 0.16 -28.45 16 6 C -0.15 -4.82 5.53 -20.02 -0.11 -4.93 16 7 C -0.11 -2.56 7.36 22.63 0.17 -2.40 16 8 C 0.08 1.58 6.68 22.44 0.15 1.73 16 9 O -0.33 -5.11 10.49 -93.42 -0.98 -6.09 16 10 C 0.02 0.10 9.81 113.37 1.11 1.21 16 11 C -0.13 -2.08 9.02 22.39 0.20 -1.87 16 12 C -0.17 -3.36 9.02 22.32 0.20 -3.16 16 13 C 0.12 3.69 6.66 22.83 0.15 3.84 16 14 O -0.33 -11.65 9.10 -73.11 -0.67 -12.31 16 15 C 0.02 0.37 9.81 113.37 1.11 1.49 16 16 C 0.13 5.49 4.41 46.75 0.21 5.70 16 17 C 0.16 8.84 6.79 86.44 0.59 9.43 16 18 N -0.63 -37.42 3.70 -716.68 -2.65 -40.07 16 19 C -0.24 -14.74 10.70 84.04 0.90 -13.84 16 20 H 0.08 4.95 7.83 -2.91 -0.02 4.92 16 21 C -0.07 -4.48 5.50 84.86 0.47 -4.01 16 22 N -0.95 -63.03 11.39 21.65 0.25 -62.78 16 23 Si 0.99 49.40 29.55 68.60 2.03 51.43 16 24 H -0.29 -14.45 7.11 99.48 0.71 -13.74 16 25 H -0.29 -14.23 7.11 99.48 0.71 -13.52 16 26 H -0.26 -12.27 7.11 99.48 0.71 -11.56 16 27 C 0.11 5.55 8.27 86.49 0.72 6.27 16 28 H 0.10 1.28 8.14 -2.39 -0.02 1.26 16 29 H 0.05 1.12 7.28 -2.39 -0.02 1.10 16 30 H 0.06 1.24 8.06 -2.39 -0.02 1.22 16 31 H 0.09 1.84 8.14 -2.39 -0.02 1.83 16 32 H 0.12 2.57 3.66 -3.91 -0.01 2.56 16 33 H 0.17 3.69 3.52 -2.91 -0.01 3.68 16 34 H 0.12 0.36 8.14 -2.38 -0.02 0.34 16 35 H 0.07 0.29 7.65 -2.38 -0.02 0.27 16 36 H 0.07 0.31 7.66 -2.39 -0.02 0.29 16 37 H 0.17 1.30 6.27 -2.91 -0.02 1.28 16 38 H 0.17 2.16 6.29 -2.91 -0.02 2.14 16 39 H 0.07 1.26 7.67 -2.39 -0.02 1.24 16 40 H 0.08 1.26 7.65 -2.39 -0.02 1.24 16 41 H 0.10 2.15 8.14 -2.39 -0.02 2.13 16 42 H 0.13 4.83 8.07 -2.39 -0.02 4.81 16 43 H 0.02 1.23 5.77 -2.38 -0.01 1.21 16 44 H 0.04 2.23 7.17 -2.38 -0.02 2.21 16 45 H 0.25 15.72 8.31 -92.71 -0.77 14.95 16 46 H 0.06 2.51 8.14 -2.39 -0.02 2.49 16 47 H 0.03 1.75 6.25 -2.39 -0.01 1.74 16 Total: -1.00 -90.30 370.88 4.47 -85.82 By element: Atomic # 1 Polarization: 13.10 SS G_CDS: 0.99 Total: 14.10 kcal Atomic # 6 Polarization: 14.28 SS G_CDS: 7.59 Total: 21.87 kcal Atomic # 7 Polarization: -121.73 SS G_CDS: -4.65 Total: -126.37 kcal Atomic # 8 Polarization: -45.36 SS G_CDS: -1.49 Total: -46.85 kcal Atomic # 14 Polarization: 49.40 SS G_CDS: 2.03 Total: 51.43 kcal Total: -90.30 4.47 -85.82 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000957372241.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.906 kcal (2) G-P(sol) polarization free energy of solvation -90.299 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.393 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.475 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.825 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.919 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds