Wall clock time and date at job start Tue Mar 31 2020 18:05:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35982 * 116.99949 * 2 1 4 4 C 1.38697 * 120.00162 * 179.97438 * 3 2 1 5 5 C 1.38137 * 119.99741 * 179.97438 * 4 3 2 6 6 C 1.38690 * 120.00284 * 359.97438 * 5 4 3 7 7 O 1.35982 * 120.00182 * 179.97438 * 6 5 4 8 8 C 1.42898 * 116.99767 * 5.55560 * 7 6 5 9 9 H 1.08994 * 109.47082 * 35.08421 * 8 7 6 10 10 C 1.53001 * 109.47451 * 275.08134 * 8 7 6 11 11 C 1.50700 * 109.47124 * 155.08447 * 8 7 6 12 12 O 1.21282 * 119.99904 * 10.97586 * 11 8 7 13 13 N 1.34775 * 120.00138 * 190.97968 * 11 8 7 14 14 C 1.47022 * 125.65001 * 355.44009 * 13 11 8 15 15 C 1.54326 * 107.27177 * 181.02912 * 14 13 11 16 16 C 1.55152 * 102.94333 * 22.19111 * 15 14 13 17 17 H 1.08995 * 111.03855 * 82.58641 * 16 15 14 18 18 N 1.46500 * 111.00449 * 206.42671 * 16 15 14 19 19 C 1.36940 * 119.99748 * 267.19790 * 18 16 15 20 20 H 1.07994 * 120.00106 * 0.02562 * 19 18 16 21 21 C 1.38815 * 119.99814 * 179.97438 * 19 18 16 22 22 N 1.31626 * 119.99821 * 359.97438 * 21 19 18 23 23 Si 1.86794 * 120.00114 * 180.02562 * 21 19 18 24 24 H 1.48499 * 109.46991 * 0.02562 * 23 21 19 25 25 H 1.48502 * 109.47190 * 119.99641 * 23 21 19 26 26 H 1.48500 * 109.47142 * 240.00007 * 23 21 19 27 27 C 1.47432 * 125.64829 * 175.39997 * 13 11 8 28 28 C 1.38705 * 119.99959 * 0.27035 * 6 5 4 29 29 C 1.38128 * 119.99918 * 359.51650 * 28 6 5 30 30 H 1.09009 * 109.47291 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.47514 * 299.99504 * 1 2 3 32 32 H 1.08997 * 109.47684 * 60.00439 * 1 2 3 33 33 H 1.07997 * 120.00159 * 359.97438 * 4 3 2 34 34 H 1.08004 * 119.99313 * 179.97438 * 5 4 3 35 35 H 1.08998 * 109.47351 * 174.51904 * 10 8 7 36 36 H 1.09004 * 109.47011 * 294.52537 * 10 8 7 37 37 H 1.09005 * 109.46682 * 54.52060 * 10 8 7 38 38 H 1.09007 * 109.87591 * 300.44378 * 14 13 11 39 39 H 1.08993 * 109.88312 * 61.45214 * 14 13 11 40 40 H 1.09004 * 110.71248 * 263.82737 * 15 14 13 41 41 H 1.08999 * 110.71767 * 140.55670 * 15 14 13 42 42 H 0.96998 * 120.00334 * 86.91820 * 18 16 15 43 43 H 0.97005 * 119.99708 * 179.97438 * 22 21 19 44 44 H 1.08997 * 110.36534 * 37.07138 * 27 13 11 45 45 H 1.08997 * 110.36846 * 274.74129 * 27 13 11 46 46 H 1.07996 * 119.99952 * 179.73070 * 28 6 5 47 47 H 1.07999 * 120.00162 * 180.27945 * 29 28 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2116 0.0000 4 6 3.4314 1.2843 0.0005 5 6 4.0584 2.5151 0.0000 6 6 3.3030 3.6782 -0.0016 7 8 3.9202 4.8899 -0.0016 8 6 5.3440 4.8926 -0.1232 9 1 5.6543 4.0787 -0.7785 10 6 5.9743 4.7036 1.2581 11 6 5.7960 6.2068 -0.7059 12 8 5.0130 7.1278 -0.8041 13 7 7.0702 6.3587 -1.1180 14 6 8.1424 5.3635 -0.9717 15 6 9.4265 5.9833 -1.5622 16 6 9.1395 7.5066 -1.4954 17 1 9.3562 7.9025 -0.5033 18 7 9.8947 8.2287 -2.5223 19 6 11.1248 8.7526 -2.2261 20 1 11.5383 8.6330 -1.2357 21 6 11.8406 9.4363 -3.1993 22 7 11.3371 9.5807 -4.4068 23 14 13.5188 10.1503 -2.7955 24 1 13.8564 9.8516 -1.3806 25 1 14.5415 9.5452 -3.6862 26 1 13.4930 11.6211 -2.9989 27 6 7.6194 7.5500 -1.7908 28 6 1.9178 3.6056 0.0030 29 6 1.2908 2.3749 -0.0009 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3634 0.5137 0.8900 32 1 -0.3634 0.5137 -0.8900 33 1 4.0196 0.3786 0.0014 34 1 5.1369 2.5716 0.0008 35 1 7.0551 4.6081 1.1544 36 1 5.7440 5.5661 1.8836 37 1 5.5726 3.8019 1.7204 38 1 8.2930 5.1332 0.0830 39 1 7.8822 4.4556 -1.5157 40 1 9.5702 5.6627 -2.5940 41 1 10.2936 5.7272 -0.9533 42 1 9.5252 8.3323 -3.4132 43 1 11.8372 10.0589 -5.0868 44 1 7.1783 8.4566 -1.3767 45 1 7.4399 7.4958 -2.8645 46 1 1.3296 4.5113 0.0061 47 1 0.2123 2.3183 -0.0019 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000969524039.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:05:54 Heat of formation + Delta-G solvation = -56.090542 kcal Electronic energy + Delta-G solvation = -28135.721378 eV Core-core repulsion = 24092.261286 eV Total energy + Delta-G solvation = -4043.460092 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.96710 -40.09021 -39.06166 -37.36860 -36.46941 -34.28402 -32.63096 -31.54507 -31.01012 -29.63764 -29.55837 -27.78378 -27.46941 -25.08666 -23.68427 -23.22722 -22.73957 -21.78459 -20.21746 -19.35652 -18.87433 -17.98081 -17.46315 -17.12570 -16.39300 -16.13436 -16.01572 -15.69189 -15.53577 -15.10952 -14.52253 -14.38949 -13.95959 -13.81223 -13.74056 -13.49316 -13.35423 -13.08197 -12.92853 -12.82627 -12.70668 -12.48447 -12.18777 -12.06504 -11.98703 -11.68509 -11.57206 -11.23045 -10.98436 -10.89249 -10.77282 -10.73314 -10.32963 -10.09553 -9.83526 -9.67827 -9.41312 -9.02041 -8.51780 -8.02451 -7.10574 -5.87066 -3.18049 0.91578 1.15943 2.41745 2.58850 2.94557 3.37958 3.41172 3.42024 3.45082 3.46157 4.25199 4.42669 4.46448 4.50419 4.54419 4.65921 4.67020 4.75795 4.81842 4.93351 4.96335 5.05314 5.07763 5.16035 5.28573 5.32066 5.37017 5.46554 5.52946 5.61290 5.66535 5.69167 5.81514 5.90665 5.97395 6.01641 6.07793 6.16477 6.22539 6.28881 6.44574 6.54016 6.82694 6.94417 7.18878 7.56986 7.61521 8.16339 8.30092 9.41952 9.95207 10.29948 11.35016 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.034236 B = 0.001868 C = 0.001842 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 817.658334 B =14983.291300 C =15199.723025 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.319 6.319 3 C 0.086 3.914 4 C -0.109 4.109 5 C -0.172 4.172 6 C 0.099 3.901 7 O -0.285 6.285 8 C 0.073 3.927 9 H 0.096 0.904 10 C -0.180 4.180 11 C 0.531 3.469 12 O -0.522 6.522 13 N -0.609 5.609 14 C 0.093 3.907 15 C -0.156 4.156 16 C 0.172 3.828 17 H 0.068 0.932 18 N -0.713 5.713 19 C -0.246 4.246 20 H 0.074 0.926 21 C -0.009 4.009 22 N -0.929 5.929 23 Si 0.909 3.091 24 H -0.279 1.279 25 H -0.291 1.291 26 H -0.291 1.291 27 C 0.099 3.901 28 C -0.109 4.109 29 C -0.167 4.167 30 H 0.099 0.901 31 H 0.054 0.946 32 H 0.055 0.945 33 H 0.134 0.866 34 H 0.138 0.862 35 H 0.084 0.916 36 H 0.075 0.925 37 H 0.075 0.925 38 H 0.068 0.932 39 H 0.062 0.938 40 H 0.077 0.923 41 H 0.076 0.924 42 H 0.387 0.613 43 H 0.257 0.743 44 H 0.078 0.922 45 H 0.070 0.930 46 H 0.136 0.864 47 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.460 -20.152 10.913 29.428 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.233 6.233 3 C 0.042 3.958 4 C -0.128 4.128 5 C -0.191 4.191 6 C 0.054 3.946 7 O -0.198 6.198 8 C 0.013 3.987 9 H 0.113 0.887 10 C -0.237 4.237 11 C 0.318 3.682 12 O -0.397 6.397 13 N -0.345 5.345 14 C -0.030 4.030 15 C -0.197 4.197 16 C 0.060 3.940 17 H 0.086 0.914 18 N -0.353 5.353 19 C -0.377 4.377 20 H 0.091 0.909 21 C -0.206 4.206 22 N -0.576 5.576 23 Si 0.740 3.260 24 H -0.205 1.205 25 H -0.218 1.218 26 H -0.218 1.218 27 C -0.024 4.024 28 C -0.128 4.128 29 C -0.185 4.185 30 H 0.117 0.883 31 H 0.073 0.927 32 H 0.073 0.927 33 H 0.152 0.848 34 H 0.155 0.845 35 H 0.103 0.897 36 H 0.094 0.906 37 H 0.094 0.906 38 H 0.086 0.914 39 H 0.081 0.919 40 H 0.096 0.904 41 H 0.095 0.905 42 H 0.221 0.779 43 H 0.066 0.934 44 H 0.097 0.903 45 H 0.088 0.912 46 H 0.154 0.846 47 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -18.797 -19.557 10.959 29.256 hybrid contribution 0.768 0.289 -0.231 0.852 sum -18.029 -19.269 10.728 28.485 Atomic orbital electron populations 1.23040 0.78529 1.03888 1.01326 1.86070 1.21224 1.26710 1.89346 1.18904 0.92290 0.84241 1.00402 1.20202 0.91381 0.97993 1.03229 1.21152 1.00366 0.91396 1.06152 1.18963 0.92330 0.84267 0.99065 1.86223 1.19510 1.26186 1.87859 1.22135 0.80467 0.97304 0.98824 0.88690 1.22408 1.02014 1.04098 0.95181 1.19592 0.81173 0.88864 0.78607 1.90739 1.52458 1.41665 1.54822 1.48310 1.08152 1.19243 1.58801 1.22299 0.88305 0.91677 1.00679 1.23442 0.94606 0.99948 1.01686 1.21294 0.88014 0.90262 0.94422 0.91377 1.42269 1.18835 1.63990 1.10224 1.19271 0.93485 1.28174 0.96808 0.90851 1.24785 0.99028 1.00990 0.95803 1.69677 1.38516 1.46606 1.02838 0.86092 0.83789 0.78660 0.77441 1.20463 1.21788 1.21752 1.22662 0.95428 0.87203 0.97123 1.20245 0.91422 0.98166 1.02980 1.21055 1.00082 0.91342 1.06064 0.88311 0.92700 0.92677 0.84804 0.84474 0.89697 0.90603 0.90599 0.91401 0.91938 0.90449 0.90500 0.77900 0.93358 0.90311 0.91151 0.84625 0.84795 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.14 9.81 101.05 0.99 1.13 16 2 O -0.32 -2.82 10.50 -19.68 -0.21 -3.03 16 3 C 0.09 0.82 6.69 -39.24 -0.26 0.55 16 4 C -0.11 -1.00 9.98 -39.45 -0.39 -1.40 16 5 C -0.17 -1.63 8.21 -39.45 -0.32 -1.95 16 6 C 0.10 1.13 6.58 -39.24 -0.26 0.87 16 7 O -0.28 -3.87 9.36 -39.35 -0.37 -4.23 16 8 C 0.07 0.86 2.05 -27.88 -0.06 0.80 16 9 H 0.10 0.92 6.16 -51.93 -0.32 0.60 16 10 C -0.18 -1.65 8.96 37.16 0.33 -1.32 16 11 C 0.53 8.31 7.18 -10.99 -0.08 8.23 16 12 O -0.52 -10.38 16.77 -14.11 -0.24 -10.62 16 13 N -0.61 -9.01 3.33 -170.51 -0.57 -9.57 16 14 C 0.09 1.11 6.08 -3.06 -0.02 1.09 16 15 C -0.16 -2.33 6.65 -24.90 -0.17 -2.50 16 16 C 0.17 3.18 3.71 -65.78 -0.24 2.93 16 17 H 0.07 1.28 8.09 -51.93 -0.42 0.86 16 18 N -0.71 -16.87 5.24 -51.35 -0.27 -17.14 16 19 C -0.25 -6.50 9.96 -15.06 -0.15 -6.65 16 20 H 0.07 1.87 7.83 -52.49 -0.41 1.46 16 21 C -0.01 -0.26 5.50 -17.43 -0.10 -0.36 16 22 N -0.93 -27.20 13.06 55.49 0.72 -26.47 16 23 Si 0.91 21.65 29.55 -169.99 -5.02 16.63 16 24 H -0.28 -6.42 7.11 56.52 0.40 -6.01 16 25 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 26 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 27 C 0.10 1.71 6.58 -2.52 -0.02 1.69 16 28 C -0.11 -1.13 9.98 -39.45 -0.39 -1.52 16 29 C -0.17 -1.47 9.03 -39.45 -0.36 -1.83 16 30 H 0.10 0.31 8.14 -51.92 -0.42 -0.11 16 31 H 0.05 0.22 7.66 -51.93 -0.40 -0.17 16 32 H 0.05 0.24 7.66 -51.93 -0.40 -0.16 16 33 H 0.13 1.00 8.06 -52.49 -0.42 0.58 16 34 H 0.14 1.04 5.49 -52.48 -0.29 0.75 16 35 H 0.08 0.65 5.48 -51.93 -0.28 0.36 16 36 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 37 H 0.08 0.59 6.97 -51.93 -0.36 0.22 16 38 H 0.07 0.66 5.91 -51.92 -0.31 0.35 16 39 H 0.06 0.62 8.06 -51.93 -0.42 0.20 16 40 H 0.08 1.25 8.14 -51.93 -0.42 0.83 16 41 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16 42 H 0.39 9.80 7.76 -40.82 -0.32 9.48 16 43 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 44 H 0.08 1.45 7.99 -51.93 -0.42 1.04 16 45 H 0.07 1.26 8.00 -51.93 -0.42 0.84 16 46 H 0.14 1.28 8.06 -52.49 -0.42 0.86 16 47 H 0.13 0.84 6.29 -52.49 -0.33 0.51 16 LS Contribution 382.44 15.07 5.76 5.76 Total: -1.00 -33.20 382.44 -8.43 -41.63 By element: Atomic # 1 Polarization: 14.03 SS G_CDS: -6.76 Total: 7.28 kcal Atomic # 6 Polarization: 1.26 SS G_CDS: -1.49 Total: -0.23 kcal Atomic # 7 Polarization: -53.07 SS G_CDS: -0.11 Total: -53.19 kcal Atomic # 8 Polarization: -17.06 SS G_CDS: -0.81 Total: -17.88 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -5.02 Total: 16.63 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -33.20 -8.43 -41.63 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000969524039.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.463 kcal (2) G-P(sol) polarization free energy of solvation -33.197 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.660 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.431 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.628 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.091 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds