Wall clock time and date at job start Tue Mar 31 2020 18:05:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35982 * 116.99949 * 2 1 4 4 C 1.38697 * 120.00162 * 179.97438 * 3 2 1 5 5 C 1.38137 * 119.99741 * 179.97438 * 4 3 2 6 6 C 1.38690 * 120.00284 * 359.97438 * 5 4 3 7 7 O 1.35982 * 120.00182 * 179.97438 * 6 5 4 8 8 C 1.42898 * 116.99767 * 5.55560 * 7 6 5 9 9 H 1.08994 * 109.47082 * 35.08421 * 8 7 6 10 10 C 1.53001 * 109.47451 * 275.08134 * 8 7 6 11 11 C 1.50700 * 109.47124 * 155.08447 * 8 7 6 12 12 O 1.21282 * 119.99904 * 10.97586 * 11 8 7 13 13 N 1.34775 * 120.00138 * 190.97968 * 11 8 7 14 14 C 1.47022 * 125.65001 * 355.44009 * 13 11 8 15 15 C 1.54326 * 107.27177 * 181.02912 * 14 13 11 16 16 C 1.55152 * 102.94333 * 22.19111 * 15 14 13 17 17 H 1.08995 * 111.03855 * 82.58641 * 16 15 14 18 18 N 1.46500 * 111.00449 * 206.42671 * 16 15 14 19 19 C 1.36940 * 119.99748 * 267.19790 * 18 16 15 20 20 H 1.07994 * 120.00106 * 0.02562 * 19 18 16 21 21 C 1.38815 * 119.99814 * 179.97438 * 19 18 16 22 22 N 1.31626 * 119.99821 * 359.97438 * 21 19 18 23 23 Si 1.86794 * 120.00114 * 180.02562 * 21 19 18 24 24 H 1.48499 * 109.46991 * 0.02562 * 23 21 19 25 25 H 1.48502 * 109.47190 * 119.99641 * 23 21 19 26 26 H 1.48500 * 109.47142 * 240.00007 * 23 21 19 27 27 C 1.47432 * 125.64829 * 175.39997 * 13 11 8 28 28 C 1.38705 * 119.99959 * 0.27035 * 6 5 4 29 29 C 1.38128 * 119.99918 * 359.51650 * 28 6 5 30 30 H 1.09009 * 109.47291 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.47514 * 299.99504 * 1 2 3 32 32 H 1.08997 * 109.47684 * 60.00439 * 1 2 3 33 33 H 1.07997 * 120.00159 * 359.97438 * 4 3 2 34 34 H 1.08004 * 119.99313 * 179.97438 * 5 4 3 35 35 H 1.08998 * 109.47351 * 174.51904 * 10 8 7 36 36 H 1.09004 * 109.47011 * 294.52537 * 10 8 7 37 37 H 1.09005 * 109.46682 * 54.52060 * 10 8 7 38 38 H 1.09007 * 109.87591 * 300.44378 * 14 13 11 39 39 H 1.08993 * 109.88312 * 61.45214 * 14 13 11 40 40 H 1.09004 * 110.71248 * 263.82737 * 15 14 13 41 41 H 1.08999 * 110.71767 * 140.55670 * 15 14 13 42 42 H 0.96998 * 120.00334 * 86.91820 * 18 16 15 43 43 H 0.97005 * 119.99708 * 179.97438 * 22 21 19 44 44 H 1.08997 * 110.36534 * 37.07138 * 27 13 11 45 45 H 1.08997 * 110.36846 * 274.74129 * 27 13 11 46 46 H 1.07996 * 119.99952 * 179.73070 * 28 6 5 47 47 H 1.07999 * 120.00162 * 180.27945 * 29 28 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2116 0.0000 4 6 3.4314 1.2843 0.0005 5 6 4.0584 2.5151 0.0000 6 6 3.3030 3.6782 -0.0016 7 8 3.9202 4.8899 -0.0016 8 6 5.3440 4.8926 -0.1232 9 1 5.6543 4.0787 -0.7785 10 6 5.9743 4.7036 1.2581 11 6 5.7960 6.2068 -0.7059 12 8 5.0130 7.1278 -0.8041 13 7 7.0702 6.3587 -1.1180 14 6 8.1424 5.3635 -0.9717 15 6 9.4265 5.9833 -1.5622 16 6 9.1395 7.5066 -1.4954 17 1 9.3562 7.9025 -0.5033 18 7 9.8947 8.2287 -2.5223 19 6 11.1248 8.7526 -2.2261 20 1 11.5383 8.6330 -1.2357 21 6 11.8406 9.4363 -3.1993 22 7 11.3371 9.5807 -4.4068 23 14 13.5188 10.1503 -2.7955 24 1 13.8564 9.8516 -1.3806 25 1 14.5415 9.5452 -3.6862 26 1 13.4930 11.6211 -2.9989 27 6 7.6194 7.5500 -1.7908 28 6 1.9178 3.6056 0.0030 29 6 1.2908 2.3749 -0.0009 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3634 0.5137 0.8900 32 1 -0.3634 0.5137 -0.8900 33 1 4.0196 0.3786 0.0014 34 1 5.1369 2.5716 0.0008 35 1 7.0551 4.6081 1.1544 36 1 5.7440 5.5661 1.8836 37 1 5.5726 3.8019 1.7204 38 1 8.2930 5.1332 0.0830 39 1 7.8822 4.4556 -1.5157 40 1 9.5702 5.6627 -2.5940 41 1 10.2936 5.7272 -0.9533 42 1 9.5252 8.3323 -3.4132 43 1 11.8372 10.0589 -5.0868 44 1 7.1783 8.4566 -1.3767 45 1 7.4399 7.4958 -2.8645 46 1 1.3296 4.5113 0.0061 47 1 0.2123 2.3183 -0.0019 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000969524039.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:05:53 Heat of formation + Delta-G solvation = -77.384126 kcal Electronic energy + Delta-G solvation = -28136.644737 eV Core-core repulsion = 24092.261286 eV Total energy + Delta-G solvation = -4044.383451 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.85469 -41.02399 -39.95079 -38.65076 -37.26942 -36.00048 -33.83375 -32.82505 -31.93203 -31.01521 -30.22011 -29.23742 -27.97639 -26.27981 -25.25999 -24.13513 -23.71817 -22.60394 -21.67592 -20.45626 -19.61273 -19.32785 -18.71264 -18.21632 -17.42495 -17.24572 -16.78431 -16.62709 -16.49434 -16.18002 -15.79694 -15.55236 -15.20753 -15.05880 -14.72371 -14.53953 -14.40934 -14.13320 -14.01491 -13.70661 -13.53502 -13.38587 -13.34078 -13.06635 -13.04956 -12.95876 -12.69955 -12.56605 -12.38806 -12.25428 -12.07649 -11.75203 -11.67758 -11.55851 -11.44677 -10.96006 -10.90360 -10.09514 -9.75659 -9.05133 -8.75226 -7.95279 -5.25406 0.24009 0.42931 1.35044 1.43218 1.50260 1.51017 1.60516 2.36257 2.49717 2.58545 2.71432 3.23095 3.39252 3.65287 3.68738 3.81443 3.82993 3.87303 3.91077 4.03824 4.06759 4.21396 4.27075 4.32126 4.41613 4.43093 4.49356 4.55770 4.60713 4.66752 4.70546 4.75911 4.81540 4.94987 4.98575 4.99694 5.14103 5.14396 5.26968 5.28950 5.31518 5.43373 5.54393 5.55981 6.22997 6.25612 6.40249 6.51309 6.95856 7.32445 8.03838 8.27368 9.28161 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.034236 B = 0.001868 C = 0.001842 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 817.658334 B =14983.291300 C =15199.723025 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.334 6.334 3 C 0.080 3.920 4 C -0.116 4.116 5 C -0.167 4.167 6 C 0.074 3.926 7 O -0.315 6.315 8 C 0.079 3.921 9 H 0.123 0.877 10 C -0.173 4.173 11 C 0.526 3.474 12 O -0.576 6.576 13 N -0.606 5.606 14 C 0.096 3.904 15 C -0.144 4.144 16 C 0.166 3.834 17 H 0.067 0.933 18 N -0.729 5.729 19 C -0.239 4.239 20 H 0.083 0.917 21 C -0.075 4.075 22 N -0.970 5.970 23 Si 0.973 3.027 24 H -0.262 1.262 25 H -0.294 1.294 26 H -0.298 1.298 27 C 0.106 3.894 28 C -0.125 4.125 29 C -0.166 4.166 30 H 0.118 0.882 31 H 0.064 0.936 32 H 0.062 0.938 33 H 0.152 0.848 34 H 0.159 0.841 35 H 0.107 0.893 36 H 0.058 0.942 37 H 0.095 0.905 38 H 0.103 0.897 39 H 0.096 0.904 40 H 0.064 0.936 41 H 0.090 0.910 42 H 0.374 0.626 43 H 0.251 0.749 44 H 0.058 0.942 45 H 0.059 0.941 46 H 0.133 0.867 47 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.191 -23.232 12.703 32.125 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.248 6.248 3 C 0.035 3.965 4 C -0.134 4.134 5 C -0.185 4.185 6 C 0.030 3.970 7 O -0.229 6.229 8 C 0.019 3.981 9 H 0.140 0.860 10 C -0.231 4.231 11 C 0.314 3.686 12 O -0.455 6.455 13 N -0.340 5.340 14 C -0.025 4.025 15 C -0.185 4.185 16 C 0.055 3.945 17 H 0.085 0.915 18 N -0.368 5.368 19 C -0.371 4.371 20 H 0.101 0.899 21 C -0.267 4.267 22 N -0.620 5.620 23 Si 0.803 3.197 24 H -0.186 1.186 25 H -0.221 1.221 26 H -0.226 1.226 27 C -0.018 4.018 28 C -0.143 4.143 29 C -0.185 4.185 30 H 0.136 0.864 31 H 0.082 0.918 32 H 0.080 0.920 33 H 0.169 0.831 34 H 0.177 0.823 35 H 0.125 0.875 36 H 0.078 0.922 37 H 0.114 0.886 38 H 0.121 0.879 39 H 0.114 0.886 40 H 0.083 0.917 41 H 0.109 0.891 42 H 0.206 0.794 43 H 0.059 0.941 44 H 0.076 0.924 45 H 0.077 0.923 46 H 0.151 0.849 47 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -18.532 -22.707 12.812 31.988 hybrid contribution 0.531 1.169 -0.747 1.486 sum -18.001 -21.538 12.065 30.553 Atomic orbital electron populations 1.23321 0.76732 1.05513 1.02131 1.86056 1.23175 1.26410 1.89186 1.19136 0.92792 0.84650 0.99931 1.20490 0.91630 0.98569 1.02760 1.21335 1.01329 0.90646 1.05213 1.19191 0.92797 0.84197 1.00816 1.86179 1.20406 1.27786 1.88488 1.22202 0.80253 0.95073 1.00547 0.85951 1.22419 1.03160 1.04292 0.93182 1.20427 0.80599 0.89885 0.77678 1.90710 1.53906 1.43850 1.57082 1.48332 1.08812 1.18828 1.58043 1.22516 0.85403 0.91428 1.03161 1.23225 0.96991 0.96542 1.01713 1.21461 0.87935 0.92237 0.92825 0.91500 1.42423 1.18695 1.64933 1.10721 1.19675 0.94060 1.26517 0.96835 0.89891 1.25577 1.02692 1.02501 0.95916 1.69833 1.39956 1.48354 1.03848 0.85073 0.79657 0.77123 0.77876 1.18641 1.22122 1.22575 1.22334 0.94855 0.87987 0.96632 1.20423 0.91553 0.98812 1.03554 1.21253 1.01228 0.90621 1.05355 0.86413 0.91760 0.91973 0.83078 0.82316 0.87499 0.92239 0.88633 0.87919 0.88586 0.91671 0.89108 0.79394 0.94061 0.92360 0.92283 0.84864 0.82709 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.14 9.81 113.37 1.11 1.25 16 2 O -0.33 -5.19 10.50 -93.35 -0.98 -6.17 16 3 C 0.08 1.36 6.69 22.49 0.15 1.51 16 4 C -0.12 -1.83 9.98 22.36 0.22 -1.61 16 5 C -0.17 -2.72 8.21 22.35 0.18 -2.54 16 6 C 0.07 1.61 6.58 22.49 0.15 1.76 16 7 O -0.31 -8.34 9.36 -74.54 -0.70 -9.04 16 8 C 0.08 1.68 2.05 29.85 0.06 1.74 16 9 H 0.12 1.90 6.16 -2.39 -0.01 1.89 16 10 C -0.17 -2.63 8.96 71.98 0.65 -1.98 16 11 C 0.53 16.07 7.18 87.66 0.63 16.70 16 12 O -0.58 -23.67 16.77 15.77 0.26 -23.40 16 13 N -0.61 -17.06 3.33 -811.77 -2.70 -19.76 16 14 C 0.10 1.92 6.08 86.73 0.53 2.44 16 15 C -0.14 -3.98 6.65 31.78 0.21 -3.76 16 16 C 0.17 6.03 3.71 46.38 0.17 6.20 16 17 H 0.07 2.45 8.09 -2.39 -0.02 2.43 16 18 N -0.73 -34.89 5.24 -316.38 -1.66 -36.55 16 19 C -0.24 -12.61 9.96 84.03 0.84 -11.77 16 20 H 0.08 4.13 7.83 -2.91 -0.02 4.10 16 21 C -0.07 -4.14 5.50 84.86 0.47 -3.67 16 22 N -0.97 -58.20 13.06 21.65 0.28 -57.91 16 23 Si 0.97 44.76 29.55 68.60 2.03 46.79 16 24 H -0.26 -11.16 7.11 99.48 0.71 -10.45 16 25 H -0.29 -13.54 7.11 99.48 0.71 -12.84 16 26 H -0.30 -13.96 7.11 99.48 0.71 -13.25 16 27 C 0.11 3.72 6.58 86.85 0.57 4.29 16 28 C -0.12 -2.51 9.98 22.36 0.22 -2.29 16 29 C -0.17 -2.70 9.03 22.36 0.20 -2.49 16 30 H 0.12 0.45 8.14 -2.38 -0.02 0.43 16 31 H 0.06 0.38 7.66 -2.39 -0.02 0.37 16 32 H 0.06 0.40 7.66 -2.39 -0.02 0.38 16 33 H 0.15 1.79 8.06 -2.91 -0.02 1.76 16 34 H 0.16 1.74 5.49 -2.91 -0.02 1.73 16 35 H 0.11 1.10 5.48 -2.39 -0.01 1.09 16 36 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 37 H 0.09 1.11 6.97 -2.38 -0.02 1.09 16 38 H 0.10 1.42 5.91 -2.38 -0.01 1.41 16 39 H 0.10 1.39 8.06 -2.39 -0.02 1.38 16 40 H 0.06 1.99 8.14 -2.38 -0.02 1.97 16 41 H 0.09 2.29 8.14 -2.39 -0.02 2.27 16 42 H 0.37 19.59 7.76 -92.71 -0.72 18.87 16 43 H 0.25 14.64 8.31 -92.70 -0.77 13.87 16 44 H 0.06 2.26 7.99 -2.39 -0.02 2.24 16 45 H 0.06 2.20 8.00 -2.39 -0.02 2.18 16 46 H 0.13 2.59 8.06 -2.91 -0.02 2.57 16 47 H 0.16 1.69 6.29 -2.91 -0.02 1.67 16 Total: -1.00 -75.21 382.44 3.18 -72.03 By element: Atomic # 1 Polarization: 27.97 SS G_CDS: 0.28 Total: 28.25 kcal Atomic # 6 Polarization: -0.59 SS G_CDS: 6.36 Total: 5.77 kcal Atomic # 7 Polarization: -110.15 SS G_CDS: -4.08 Total: -114.23 kcal Atomic # 8 Polarization: -37.20 SS G_CDS: -1.41 Total: -38.61 kcal Atomic # 14 Polarization: 44.76 SS G_CDS: 2.03 Total: 46.79 kcal Total: -75.21 3.18 -72.03 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000969524039.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.357 kcal (2) G-P(sol) polarization free energy of solvation -75.206 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.562 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.178 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.027 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.384 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds