Wall clock time and date at job start Tue Mar 31 2020 18:03:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08990 * 109.47206 * 2 1 4 4 C 1.50703 * 109.47031 * 240.00296 * 2 1 3 5 5 O 1.21282 * 120.00378 * 265.58001 * 4 2 1 6 6 N 1.34774 * 120.00234 * 85.57191 * 4 2 1 7 7 C 1.48108 * 127.85005 * 182.73815 * 6 4 2 8 8 C 1.54314 * 104.71476 * 219.78631 * 7 6 4 9 9 C 1.53002 * 112.07425 * 97.96061 * 8 7 6 10 10 C 1.54058 * 108.91175 * 223.84238 * 8 7 6 11 11 N 1.47206 * 106.25100 * 131.01918 * 10 8 7 12 12 C 1.36935 * 126.69828 * 148.61251 * 11 10 8 13 13 H 1.07999 * 120.00783 * 339.45665 * 12 11 10 14 14 C 1.38816 * 119.99811 * 159.45776 * 12 11 10 15 15 N 1.31619 * 119.99880 * 351.09263 * 14 12 11 16 16 Si 1.86796 * 120.00138 * 171.08435 * 14 12 11 17 17 H 1.48505 * 109.46784 * 60.00498 * 16 14 12 18 18 H 1.48500 * 109.47208 * 180.02562 * 16 14 12 19 19 H 1.48502 * 109.47650 * 300.00388 * 16 14 12 20 20 C 1.47198 * 106.59326 * 328.34826 * 11 10 8 21 21 C 1.53753 * 106.40656 * 31.57112 * 20 11 10 22 22 C 1.52997 * 112.06508 * 104.51264 * 21 20 11 23 23 C 1.48118 * 127.84347 * 2.74848 * 6 4 2 24 24 C 1.53002 * 109.47451 * 120.00340 * 2 1 3 25 25 F 1.39894 * 109.47017 * 179.97438 * 24 2 1 26 26 F 1.39901 * 109.46972 * 299.99865 * 24 2 1 27 27 F 1.39899 * 109.46659 * 59.99714 * 24 2 1 28 28 H 1.09000 * 109.47350 * 184.02525 * 1 2 3 29 29 H 1.09001 * 109.47249 * 304.02658 * 1 2 3 30 30 H 1.08994 * 109.47338 * 64.02664 * 1 2 3 31 31 H 1.09003 * 110.38828 * 338.59840 * 7 6 4 32 32 H 1.08999 * 110.38875 * 100.86519 * 7 6 4 33 33 H 1.08997 * 109.46851 * 302.40852 * 9 8 7 34 34 H 1.09004 * 109.47304 * 62.40879 * 9 8 7 35 35 H 1.08999 * 109.46870 * 182.41046 * 9 8 7 36 36 H 1.08999 * 110.21312 * 11.79000 * 10 8 7 37 37 H 1.09004 * 110.07462 * 250.16649 * 10 8 7 38 38 H 0.96998 * 120.00014 * 179.97438 * 15 14 12 39 39 H 1.08998 * 110.06938 * 150.81031 * 20 11 10 40 40 H 1.09001 * 110.06598 * 272.33157 * 20 11 10 41 41 H 1.08994 * 109.47797 * 61.01444 * 22 21 20 42 42 H 1.09003 * 109.46889 * 181.01546 * 22 21 20 43 43 H 1.09000 * 109.46818 * 301.00603 * 22 21 20 44 44 H 1.08999 * 110.38933 * 21.40171 * 23 6 4 45 45 H 1.09001 * 110.48455 * 259.07558 * 23 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2305 5 8 2.3108 -1.8897 -1.1788 6 7 2.1720 -0.0352 -2.3886 7 6 2.5934 -0.5667 -3.7052 8 6 3.5134 0.5243 -4.2921 9 6 4.9939 0.2091 -4.0690 10 6 3.1573 0.7324 -5.7764 11 7 3.0103 2.1850 -5.9650 12 6 3.2861 2.8944 -7.1033 13 1 3.9440 2.4793 -7.8524 14 6 2.7200 4.1474 -7.2944 15 7 1.7862 4.5798 -6.4737 16 14 3.2836 5.2200 -8.7161 17 1 3.0331 4.5139 -9.9984 18 1 2.5302 6.4996 -8.6999 19 1 4.7357 5.4994 -8.5803 20 6 2.5028 2.7247 -4.6931 21 6 3.0798 1.8326 -3.5817 22 6 4.2252 2.5163 -2.8325 23 6 1.9391 1.4069 -2.6335 24 6 2.0401 -0.7213 1.2492 25 9 3.4390 -0.7218 1.2488 26 9 1.5738 -0.0619 2.3915 27 9 1.5737 -2.0403 1.2491 28 1 -0.3634 -1.0251 0.0721 29 1 -0.3634 0.5751 0.8517 30 1 -0.3634 0.4500 -0.9238 31 1 3.1427 -1.4998 -3.5799 32 1 1.7264 -0.7207 -4.3477 33 1 5.1840 0.0939 -3.0019 34 1 5.2504 -0.7159 -4.5856 35 1 5.6020 1.0246 -4.4605 36 1 2.2207 0.2277 -6.0134 37 1 3.9584 0.3522 -6.4103 38 1 1.3909 5.4555 -6.6070 39 1 2.8411 3.7524 -4.5613 40 1 1.4136 2.6843 -4.6777 41 1 3.8579 3.4273 -2.3601 42 1 4.6134 1.8422 -2.0689 43 1 5.0205 2.7663 -3.5347 44 1 1.9942 1.9646 -1.6987 45 1 0.9712 1.5614 -3.1104 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000982444073.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:03:03 Heat of formation + Delta-G solvation = -161.232340 kcal Electronic energy + Delta-G solvation = -31314.070673 eV Core-core repulsion = 26724.194551 eV Total energy + Delta-G solvation = -4589.876122 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.161 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -50.21448 -47.74678 -47.60344 -40.68279 -38.85825 -35.16607 -34.23420 -32.79443 -31.78939 -30.66977 -27.56054 -26.70352 -25.97238 -25.76468 -25.11302 -23.35431 -21.98821 -20.33711 -19.64839 -18.72188 -18.51481 -18.14982 -17.17620 -17.04537 -16.65016 -15.67424 -15.23550 -14.78663 -14.61714 -14.54420 -14.46618 -14.16661 -14.08068 -13.83835 -13.77533 -13.68395 -13.45222 -13.37917 -13.28635 -12.85276 -12.62665 -12.35718 -12.15437 -12.07224 -11.92960 -11.87158 -11.60840 -11.38846 -11.30870 -10.86555 -10.81716 -10.69684 -10.25722 -10.07612 -10.04661 -9.93773 -9.77395 -9.68799 -8.70860 -8.65848 -6.84743 -5.88016 -3.23637 2.24268 2.50093 2.87777 3.33998 3.39417 3.39814 3.52082 3.85024 3.86751 4.37581 4.41211 4.57975 4.64823 4.70228 4.83809 5.09260 5.19971 5.28053 5.37032 5.39183 5.42709 5.53397 5.57058 5.67991 5.75057 5.75707 5.86941 5.94640 6.01237 6.13318 6.15956 6.23092 6.38508 6.40515 6.56333 6.64911 6.72516 6.84979 7.23818 7.42878 7.48633 7.66510 7.94743 8.17170 9.07062 9.68882 10.43261 11.26582 Molecular weight = 334.16amu Principal moments of inertia in cm(-1) A = 0.024362 B = 0.003163 C = 0.003053 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1149.061370 B = 8849.611738 C = 9168.869031 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.160 4.160 3 H 0.133 0.867 4 C 0.540 3.460 5 O -0.530 6.530 6 N -0.609 5.609 7 C 0.117 3.883 8 C -0.080 4.080 9 C -0.121 4.121 10 C 0.142 3.858 11 N -0.589 5.589 12 C -0.234 4.234 13 H 0.073 0.927 14 C 0.001 3.999 15 N -0.913 5.913 16 Si 0.910 3.090 17 H -0.283 1.283 18 H -0.290 1.290 19 H -0.284 1.284 20 C 0.182 3.818 21 C -0.093 4.093 22 C -0.121 4.121 23 C 0.106 3.894 24 C 0.471 3.529 25 F -0.179 7.179 26 F -0.182 7.182 27 F -0.167 7.167 28 H 0.076 0.924 29 H 0.082 0.918 30 H 0.086 0.914 31 H 0.080 0.920 32 H 0.077 0.923 33 H 0.050 0.950 34 H 0.050 0.950 35 H 0.064 0.936 36 H 0.022 0.978 37 H 0.045 0.955 38 H 0.255 0.745 39 H 0.067 0.933 40 H 0.030 0.970 41 H 0.053 0.947 42 H 0.045 0.955 43 H 0.064 0.936 44 H 0.074 0.926 45 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.932 -6.806 13.840 15.451 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.183 4.183 3 H 0.151 0.849 4 C 0.327 3.673 5 O -0.407 6.407 6 N -0.341 5.341 7 C -0.005 4.005 8 C -0.082 4.082 9 C -0.178 4.178 10 C 0.015 3.985 11 N -0.313 5.313 12 C -0.362 4.362 13 H 0.091 0.909 14 C -0.197 4.197 15 N -0.558 5.558 16 Si 0.739 3.261 17 H -0.209 1.209 18 H -0.216 1.216 19 H -0.210 1.210 20 C 0.056 3.944 21 C -0.095 4.095 22 C -0.178 4.178 23 C -0.016 4.016 24 C 0.417 3.583 25 F -0.160 7.160 26 F -0.163 7.163 27 F -0.148 7.148 28 H 0.095 0.905 29 H 0.101 0.899 30 H 0.105 0.895 31 H 0.098 0.902 32 H 0.096 0.904 33 H 0.069 0.931 34 H 0.069 0.931 35 H 0.083 0.917 36 H 0.039 0.961 37 H 0.063 0.937 38 H 0.065 0.935 39 H 0.086 0.914 40 H 0.047 0.953 41 H 0.072 0.928 42 H 0.064 0.936 43 H 0.083 0.917 44 H 0.092 0.908 45 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -0.857 -7.292 13.867 15.690 hybrid contribution 0.231 0.678 -0.527 0.889 sum -0.626 -6.613 13.340 14.903 Atomic orbital electron populations 1.21780 0.88879 1.04727 1.04979 1.22590 1.01681 1.02835 0.91170 0.84881 1.19225 0.78565 0.86643 0.82900 1.90793 1.50670 1.15069 1.84164 1.48959 1.65630 1.10934 1.08625 1.22638 0.98196 0.97619 0.82002 1.22307 0.94979 0.93461 0.97445 1.21629 0.94320 1.01195 1.00695 1.21482 0.97770 0.88023 0.91186 1.44371 1.77128 1.00170 1.09631 1.18908 1.22142 0.98959 0.96220 0.90913 1.24944 0.96983 0.99139 0.98590 1.69906 1.27364 1.19608 1.38932 0.86254 0.78061 0.79797 0.81950 1.20938 1.21569 1.21042 1.21189 0.95553 0.95698 0.81986 1.22508 0.94581 0.96234 0.96164 1.21638 0.97877 0.99055 0.99258 1.22860 0.99750 0.79401 0.99629 1.19835 0.75715 0.78142 0.84647 1.93206 1.29651 1.96422 1.96713 1.93182 1.88537 1.80892 1.53692 1.93226 1.88169 1.36787 1.96610 0.90470 0.89891 0.89534 0.90152 0.90439 0.93123 0.93056 0.91715 0.96057 0.93677 0.93525 0.91432 0.95262 0.92809 0.93611 0.91681 0.90798 0.89794 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.24 8.93 37.16 0.33 -0.91 16 2 C -0.16 -1.71 2.30 -91.77 -0.21 -1.92 16 3 H 0.13 1.14 6.65 -51.93 -0.35 0.80 16 4 C 0.54 7.58 6.75 -10.98 -0.07 7.51 16 5 O -0.53 -9.22 15.45 5.56 0.09 -9.13 16 6 N -0.61 -8.37 3.31 -169.45 -0.56 -8.93 16 7 C 0.12 1.71 6.21 -2.47 -0.02 1.70 16 8 C -0.08 -1.25 1.09 -152.18 -0.17 -1.42 16 9 C -0.12 -1.75 7.54 37.16 0.28 -1.47 16 10 C 0.14 2.71 6.48 -3.10 -0.02 2.69 16 11 N -0.59 -13.73 3.37 -170.99 -0.58 -14.31 16 12 C -0.23 -6.11 10.25 -15.06 -0.15 -6.27 16 13 H 0.07 1.86 7.84 -52.49 -0.41 1.45 16 14 C 0.00 0.04 5.37 -17.43 -0.09 -0.06 16 15 N -0.91 -25.11 11.20 55.49 0.62 -24.48 16 16 Si 0.91 20.97 29.56 -169.99 -5.03 15.94 16 17 H -0.28 -6.48 7.11 56.52 0.40 -6.07 16 18 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 19 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 20 C 0.18 3.83 4.72 -3.27 -0.02 3.81 16 21 C -0.09 -1.47 1.08 -152.34 -0.16 -1.64 16 22 C -0.12 -1.77 7.46 37.16 0.28 -1.49 16 23 C 0.11 1.40 6.06 -2.46 -0.01 1.39 16 24 C 0.47 5.68 2.49 37.16 0.09 5.77 16 25 F -0.18 -2.42 16.98 2.25 0.04 -2.38 16 26 F -0.18 -1.96 16.87 2.25 0.04 -1.92 16 27 F -0.17 -2.29 15.36 2.25 0.03 -2.26 16 28 H 0.08 0.71 7.69 -51.93 -0.40 0.31 16 29 H 0.08 0.55 7.92 -51.93 -0.41 0.14 16 30 H 0.09 0.69 8.14 -51.93 -0.42 0.26 16 31 H 0.08 1.19 7.61 -51.93 -0.40 0.79 16 32 H 0.08 1.13 7.15 -51.93 -0.37 0.76 16 33 H 0.05 0.71 7.21 -51.93 -0.37 0.33 16 34 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 35 H 0.06 1.00 7.18 -51.93 -0.37 0.62 16 36 H 0.02 0.42 7.10 -51.93 -0.37 0.05 16 37 H 0.04 0.85 7.88 -51.93 -0.41 0.44 16 38 H 0.25 6.85 8.31 -40.82 -0.34 6.51 16 39 H 0.07 1.61 6.90 -51.93 -0.36 1.25 16 40 H 0.03 0.67 7.08 -51.93 -0.37 0.30 16 41 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 42 H 0.04 0.61 7.21 -51.93 -0.37 0.23 16 43 H 0.06 1.04 7.20 -51.93 -0.37 0.67 16 44 H 0.07 0.80 6.35 -51.93 -0.33 0.47 16 45 H 0.08 1.14 7.14 -51.93 -0.37 0.77 16 LS Contribution 359.01 15.07 5.41 5.41 Total: -1.00 -29.85 359.01 -6.32 -36.17 By element: Atomic # 1 Polarization: 4.64 SS G_CDS: -6.44 Total: -1.80 kcal Atomic # 6 Polarization: 7.64 SS G_CDS: 0.05 Total: 7.69 kcal Atomic # 7 Polarization: -47.21 SS G_CDS: -0.52 Total: -47.72 kcal Atomic # 8 Polarization: -9.22 SS G_CDS: 0.09 Total: -9.13 kcal Atomic # 9 Polarization: -6.67 SS G_CDS: 0.11 Total: -6.56 kcal Atomic # 14 Polarization: 20.97 SS G_CDS: -5.03 Total: 15.94 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -29.85 -6.32 -36.17 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000982444073.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -125.062 kcal (2) G-P(sol) polarization free energy of solvation -29.852 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -154.914 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.318 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.170 kcal (6) G-S(sol) free energy of system = (1) + (5) -161.232 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds