Wall clock time and date at job start Tue Mar 31 2020 18:03:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08990 * 109.47206 * 2 1 4 4 C 1.50703 * 109.47031 * 240.00296 * 2 1 3 5 5 O 1.21282 * 120.00378 * 265.58001 * 4 2 1 6 6 N 1.34774 * 120.00234 * 85.57191 * 4 2 1 7 7 C 1.48108 * 127.85005 * 182.73815 * 6 4 2 8 8 C 1.54314 * 104.71476 * 219.78631 * 7 6 4 9 9 C 1.53002 * 112.07425 * 97.96061 * 8 7 6 10 10 C 1.54058 * 108.91175 * 223.84238 * 8 7 6 11 11 N 1.47206 * 106.25100 * 131.01918 * 10 8 7 12 12 C 1.36935 * 126.69828 * 148.61251 * 11 10 8 13 13 H 1.07999 * 120.00783 * 339.45665 * 12 11 10 14 14 C 1.38816 * 119.99811 * 159.45776 * 12 11 10 15 15 N 1.31619 * 119.99880 * 351.09263 * 14 12 11 16 16 Si 1.86796 * 120.00138 * 171.08435 * 14 12 11 17 17 H 1.48505 * 109.46784 * 60.00498 * 16 14 12 18 18 H 1.48500 * 109.47208 * 180.02562 * 16 14 12 19 19 H 1.48502 * 109.47650 * 300.00388 * 16 14 12 20 20 C 1.47198 * 106.59326 * 328.34826 * 11 10 8 21 21 C 1.53753 * 106.40656 * 31.57112 * 20 11 10 22 22 C 1.52997 * 112.06508 * 104.51264 * 21 20 11 23 23 C 1.48118 * 127.84347 * 2.74848 * 6 4 2 24 24 C 1.53002 * 109.47451 * 120.00340 * 2 1 3 25 25 F 1.39894 * 109.47017 * 179.97438 * 24 2 1 26 26 F 1.39901 * 109.46972 * 299.99865 * 24 2 1 27 27 F 1.39899 * 109.46659 * 59.99714 * 24 2 1 28 28 H 1.09000 * 109.47350 * 184.02525 * 1 2 3 29 29 H 1.09001 * 109.47249 * 304.02658 * 1 2 3 30 30 H 1.08994 * 109.47338 * 64.02664 * 1 2 3 31 31 H 1.09003 * 110.38828 * 338.59840 * 7 6 4 32 32 H 1.08999 * 110.38875 * 100.86519 * 7 6 4 33 33 H 1.08997 * 109.46851 * 302.40852 * 9 8 7 34 34 H 1.09004 * 109.47304 * 62.40879 * 9 8 7 35 35 H 1.08999 * 109.46870 * 182.41046 * 9 8 7 36 36 H 1.08999 * 110.21312 * 11.79000 * 10 8 7 37 37 H 1.09004 * 110.07462 * 250.16649 * 10 8 7 38 38 H 0.96998 * 120.00014 * 179.97438 * 15 14 12 39 39 H 1.08998 * 110.06938 * 150.81031 * 20 11 10 40 40 H 1.09001 * 110.06598 * 272.33157 * 20 11 10 41 41 H 1.08994 * 109.47797 * 61.01444 * 22 21 20 42 42 H 1.09003 * 109.46889 * 181.01546 * 22 21 20 43 43 H 1.09000 * 109.46818 * 301.00603 * 22 21 20 44 44 H 1.08999 * 110.38933 * 21.40171 * 23 6 4 45 45 H 1.09001 * 110.48455 * 259.07558 * 23 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2305 5 8 2.3108 -1.8897 -1.1788 6 7 2.1720 -0.0352 -2.3886 7 6 2.5934 -0.5667 -3.7052 8 6 3.5134 0.5243 -4.2921 9 6 4.9939 0.2091 -4.0690 10 6 3.1573 0.7324 -5.7764 11 7 3.0103 2.1850 -5.9650 12 6 3.2861 2.8944 -7.1033 13 1 3.9440 2.4793 -7.8524 14 6 2.7200 4.1474 -7.2944 15 7 1.7862 4.5798 -6.4737 16 14 3.2836 5.2200 -8.7161 17 1 3.0331 4.5139 -9.9984 18 1 2.5302 6.4996 -8.6999 19 1 4.7357 5.4994 -8.5803 20 6 2.5028 2.7247 -4.6931 21 6 3.0798 1.8326 -3.5817 22 6 4.2252 2.5163 -2.8325 23 6 1.9391 1.4069 -2.6335 24 6 2.0401 -0.7213 1.2492 25 9 3.4390 -0.7218 1.2488 26 9 1.5738 -0.0619 2.3915 27 9 1.5737 -2.0403 1.2491 28 1 -0.3634 -1.0251 0.0721 29 1 -0.3634 0.5751 0.8517 30 1 -0.3634 0.4500 -0.9238 31 1 3.1427 -1.4998 -3.5799 32 1 1.7264 -0.7207 -4.3477 33 1 5.1840 0.0939 -3.0019 34 1 5.2504 -0.7159 -4.5856 35 1 5.6020 1.0246 -4.4605 36 1 2.2207 0.2277 -6.0134 37 1 3.9584 0.3522 -6.4103 38 1 1.3909 5.4555 -6.6070 39 1 2.8411 3.7524 -4.5613 40 1 1.4136 2.6843 -4.6777 41 1 3.8579 3.4273 -2.3601 42 1 4.6134 1.8422 -2.0689 43 1 5.0205 2.7663 -3.5347 44 1 1.9942 1.9646 -1.6987 45 1 0.9712 1.5614 -3.1104 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000982444073.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:03:02 Heat of formation + Delta-G solvation = -178.014938 kcal Electronic energy + Delta-G solvation = -31314.798421 eV Core-core repulsion = 26724.194551 eV Total energy + Delta-G solvation = -4590.603870 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.161 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -51.14805 -48.66308 -48.57876 -41.92205 -40.09708 -36.66897 -35.22628 -34.29678 -33.10162 -32.36828 -28.85959 -27.61265 -27.41124 -27.00924 -26.60914 -24.56929 -23.32986 -21.79980 -20.72827 -19.70597 -19.58701 -19.32877 -18.63101 -18.21179 -17.94114 -16.92626 -16.51872 -16.30243 -15.97622 -15.70896 -15.48611 -15.38784 -15.07266 -15.03421 -14.84252 -14.78845 -14.71434 -14.63759 -14.20210 -14.04278 -13.74086 -13.49802 -13.47308 -13.28191 -13.17396 -13.10683 -12.96688 -12.67761 -12.56829 -12.47477 -12.35548 -12.10992 -11.89735 -11.78446 -11.42462 -11.33427 -11.22851 -10.98475 -10.62940 -9.85622 -8.74565 -7.88736 -5.24824 1.22990 1.47767 1.49659 1.50553 1.56923 1.87895 2.51613 2.62735 2.87901 2.97329 3.30952 3.39314 3.43172 3.61790 3.79823 3.83824 3.91899 3.96012 4.16647 4.20539 4.27775 4.42644 4.58262 4.59619 4.62223 4.71702 4.73767 4.82657 4.90024 4.91411 4.98144 5.01304 5.07607 5.13648 5.24286 5.28695 5.36431 5.46226 5.55513 5.65607 5.76124 6.26520 6.37974 6.85172 7.11257 7.77160 8.51445 9.24496 Molecular weight = 334.16amu Principal moments of inertia in cm(-1) A = 0.024362 B = 0.003163 C = 0.003053 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1149.061370 B = 8849.611738 C = 9168.869031 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.153 4.153 3 H 0.162 0.838 4 C 0.540 3.460 5 O -0.566 6.566 6 N -0.605 5.605 7 C 0.121 3.879 8 C -0.072 4.072 9 C -0.114 4.114 10 C 0.140 3.860 11 N -0.612 5.612 12 C -0.246 4.246 13 H 0.072 0.928 14 C -0.049 4.049 15 N -0.938 5.938 16 Si 0.969 3.031 17 H -0.279 1.279 18 H -0.293 1.293 19 H -0.279 1.279 20 C 0.193 3.807 21 C -0.086 4.086 22 C -0.115 4.115 23 C 0.113 3.887 24 C 0.469 3.531 25 F -0.189 7.189 26 F -0.173 7.173 27 F -0.180 7.180 28 H 0.067 0.933 29 H 0.106 0.894 30 H 0.094 0.906 31 H 0.081 0.919 32 H 0.076 0.924 33 H 0.060 0.940 34 H 0.062 0.938 35 H 0.052 0.948 36 H 0.019 0.981 37 H 0.044 0.956 38 H 0.250 0.750 39 H 0.034 0.966 40 H 0.007 0.993 41 H 0.064 0.936 42 H 0.066 0.934 43 H 0.045 0.955 44 H 0.109 0.891 45 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.811 -6.808 15.224 16.696 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.175 4.175 3 H 0.179 0.821 4 C 0.328 3.672 5 O -0.445 6.445 6 N -0.336 5.336 7 C -0.001 4.001 8 C -0.074 4.074 9 C -0.172 4.172 10 C 0.014 3.986 11 N -0.336 5.336 12 C -0.375 4.375 13 H 0.089 0.911 14 C -0.244 4.244 15 N -0.585 5.585 16 Si 0.797 3.203 17 H -0.205 1.205 18 H -0.220 1.220 19 H -0.206 1.206 20 C 0.067 3.933 21 C -0.089 4.089 22 C -0.172 4.172 23 C -0.009 4.009 24 C 0.414 3.586 25 F -0.171 7.171 26 F -0.154 7.154 27 F -0.161 7.161 28 H 0.086 0.914 29 H 0.125 0.875 30 H 0.113 0.887 31 H 0.100 0.900 32 H 0.094 0.906 33 H 0.079 0.921 34 H 0.081 0.919 35 H 0.071 0.929 36 H 0.037 0.963 37 H 0.063 0.937 38 H 0.059 0.941 39 H 0.052 0.948 40 H 0.025 0.975 41 H 0.083 0.917 42 H 0.085 0.915 43 H 0.064 0.936 44 H 0.127 0.873 45 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -0.729 -7.310 15.260 16.936 hybrid contribution 0.192 0.622 -0.984 1.180 sum -0.537 -6.688 14.275 15.773 Atomic orbital electron populations 1.21854 0.87083 1.04747 1.06513 1.22666 1.02996 1.03364 0.88495 0.82060 1.19752 0.77643 0.86298 0.83493 1.90783 1.52177 1.16803 1.84753 1.48905 1.65410 1.10968 1.08344 1.22503 0.97890 0.97100 0.82637 1.22193 0.96230 0.93934 0.95037 1.21569 0.92896 1.01279 1.01423 1.21607 0.97597 0.85725 0.93679 1.44642 1.77112 1.02073 1.09804 1.19220 1.21707 0.99441 0.97121 0.91075 1.25630 0.97453 1.00332 1.00960 1.70061 1.28521 1.19559 1.40384 0.85316 0.77595 0.77918 0.79444 1.20476 1.21958 1.20551 1.20992 0.94253 0.95025 0.83042 1.22379 0.95935 0.95190 0.95349 1.21583 0.96657 0.99885 0.99079 1.22791 0.98291 0.79315 1.00551 1.20049 0.75244 0.77796 0.85506 1.93186 1.30616 1.96439 1.96814 1.93199 1.88339 1.80551 1.53300 1.93201 1.88262 1.37961 1.96721 0.91421 0.87523 0.88694 0.90036 0.90586 0.92068 0.91930 0.92863 0.96302 0.93745 0.94124 0.94764 0.97530 0.91706 0.91515 0.93604 0.87336 0.89992 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.99 8.93 71.98 0.64 -1.35 16 2 C -0.15 -2.78 2.30 -11.54 -0.03 -2.80 16 3 H 0.16 2.00 6.65 -2.39 -0.02 1.98 16 4 C 0.54 13.83 6.75 87.66 0.59 14.42 16 5 O -0.57 -18.82 15.45 -3.04 -0.05 -18.86 16 6 N -0.60 -15.13 3.31 -808.41 -2.68 -17.81 16 7 C 0.12 3.35 6.21 86.52 0.54 3.88 16 8 C -0.07 -2.18 1.09 -50.67 -0.06 -2.23 16 9 C -0.11 -3.12 7.54 71.98 0.54 -2.58 16 10 C 0.14 5.33 6.48 86.60 0.56 5.89 16 11 N -0.61 -29.00 3.37 -694.90 -2.34 -31.34 16 12 C -0.25 -13.05 10.25 84.03 0.86 -12.19 16 13 H 0.07 3.69 7.84 -2.91 -0.02 3.67 16 14 C -0.05 -2.62 5.37 84.86 0.46 -2.16 16 15 N -0.94 -52.78 11.20 21.65 0.24 -52.54 16 16 Si 0.97 43.58 29.56 68.60 2.03 45.61 16 17 H -0.28 -12.23 7.11 99.48 0.71 -11.52 16 18 H -0.29 -13.27 7.11 99.48 0.71 -12.56 16 19 H -0.28 -12.24 7.11 99.48 0.71 -11.53 16 20 C 0.19 8.21 4.72 86.50 0.41 8.62 16 21 C -0.09 -2.63 1.08 -50.77 -0.05 -2.69 16 22 C -0.11 -3.12 7.46 71.98 0.54 -2.58 16 23 C 0.11 2.68 6.06 86.52 0.52 3.21 16 24 C 0.47 10.17 2.49 71.98 0.18 10.35 16 25 F -0.19 -4.73 16.98 44.97 0.76 -3.96 16 26 F -0.17 -3.24 16.87 44.97 0.76 -2.48 16 27 F -0.18 -4.70 15.36 44.97 0.69 -4.01 16 28 H 0.07 1.09 7.69 -2.39 -0.02 1.07 16 29 H 0.11 1.00 7.92 -2.39 -0.02 0.98 16 30 H 0.09 1.18 8.14 -2.39 -0.02 1.16 16 31 H 0.08 2.27 7.61 -2.39 -0.02 2.25 16 32 H 0.08 2.13 7.15 -2.39 -0.02 2.12 16 33 H 0.06 1.55 7.21 -2.39 -0.02 1.53 16 34 H 0.06 1.56 8.14 -2.38 -0.02 1.54 16 35 H 0.05 1.58 7.18 -2.39 -0.02 1.56 16 36 H 0.02 0.74 7.10 -2.39 -0.02 0.72 16 37 H 0.04 1.67 7.88 -2.39 -0.02 1.65 16 38 H 0.25 13.73 8.31 -92.71 -0.77 12.95 16 39 H 0.03 1.66 6.90 -2.39 -0.02 1.65 16 40 H 0.01 0.32 7.08 -2.39 -0.02 0.30 16 41 H 0.06 1.62 8.14 -2.39 -0.02 1.60 16 42 H 0.07 1.55 7.21 -2.39 -0.02 1.53 16 43 H 0.04 1.42 7.20 -2.39 -0.02 1.41 16 44 H 0.11 1.87 6.35 -2.39 -0.02 1.85 16 45 H 0.08 2.06 7.14 -2.39 -0.02 2.04 16 Total: -1.00 -65.79 359.01 6.13 -59.65 By element: Atomic # 1 Polarization: 6.95 SS G_CDS: 1.01 Total: 7.96 kcal Atomic # 6 Polarization: 12.08 SS G_CDS: 5.71 Total: 17.78 kcal Atomic # 7 Polarization: -96.91 SS G_CDS: -4.78 Total: -101.68 kcal Atomic # 8 Polarization: -18.82 SS G_CDS: -0.05 Total: -18.86 kcal Atomic # 9 Polarization: -12.67 SS G_CDS: 2.21 Total: -10.46 kcal Atomic # 14 Polarization: 43.58 SS G_CDS: 2.03 Total: 45.61 kcal Total: -65.79 6.13 -59.65 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000982444073.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -118.360 kcal (2) G-P(sol) polarization free energy of solvation -65.788 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -184.148 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.134 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.655 kcal (6) G-S(sol) free energy of system = (1) + (5) -178.015 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds