Wall clock time and date at job start Tue Mar 31 2020 18:03:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09000 * 109.47050 * 2 1 4 4 C 1.50699 * 109.46817 * 119.99747 * 2 1 3 5 5 O 1.21283 * 120.00241 * 120.00660 * 4 2 1 6 6 N 1.34778 * 120.00259 * 299.99674 * 4 2 1 7 7 C 1.48113 * 127.84381 * 0.02562 * 6 4 2 8 8 C 1.56805 * 104.74838 * 220.29245 * 7 6 4 9 9 C 1.53001 * 112.93290 * 96.96997 * 8 7 6 10 10 C 1.54055 * 109.11166 * 223.62786 * 8 7 6 11 11 N 1.47207 * 106.25202 * 129.74310 * 10 8 7 12 12 C 1.36943 * 126.69990 * 148.61818 * 11 10 8 13 13 H 1.08003 * 119.99648 * 345.36712 * 12 11 10 14 14 C 1.38804 * 119.99839 * 165.36728 * 12 11 10 15 15 N 1.31622 * 120.00247 * 350.70109 * 14 12 11 16 16 Si 1.86810 * 119.99877 * 170.70063 * 14 12 11 17 17 H 1.48493 * 109.47005 * 90.00021 * 16 14 12 18 18 H 1.48501 * 109.47040 * 209.99959 * 16 14 12 19 19 H 1.48500 * 109.46752 * 329.99813 * 16 14 12 20 20 C 1.47193 * 106.59660 * 328.35059 * 11 10 8 21 21 C 1.53764 * 106.40714 * 31.56949 * 20 11 10 22 22 C 1.52996 * 112.06170 * 103.41837 * 21 20 11 23 23 C 1.48104 * 127.84947 * 180.02562 * 6 4 2 24 24 C 1.52997 * 109.47422 * 239.99630 * 2 1 3 25 25 F 1.39900 * 109.47109 * 300.00553 * 24 2 1 26 26 F 1.39901 * 109.46940 * 59.99960 * 24 2 1 27 27 F 1.39895 * 109.47211 * 180.02562 * 24 2 1 28 28 H 1.09000 * 109.47050 * 180.02562 * 1 2 3 29 29 H 1.09007 * 109.47351 * 300.00383 * 1 2 3 30 30 H 1.08998 * 109.46916 * 60.00460 * 1 2 3 31 31 H 1.09004 * 110.39120 * 338.59204 * 7 6 4 32 32 H 1.09010 * 110.39114 * 100.85549 * 7 6 4 33 33 H 1.09002 * 109.46988 * 303.35153 * 9 8 7 34 34 H 1.08996 * 109.47190 * 63.34707 * 9 8 7 35 35 H 1.09005 * 109.47581 * 183.35387 * 9 8 7 36 36 H 1.09001 * 110.20919 * 10.51904 * 10 8 7 37 37 H 1.08997 * 110.07539 * 248.89375 * 10 8 7 38 38 H 0.97001 * 120.00021 * 180.02562 * 15 14 12 39 39 H 1.09005 * 110.07173 * 150.81119 * 20 11 10 40 40 H 1.09003 * 110.07129 * 272.33890 * 20 11 10 41 41 H 1.09002 * 109.47466 * 61.02114 * 22 21 20 42 42 H 1.09007 * 109.46792 * 181.01403 * 22 21 20 43 43 H 1.08999 * 109.47608 * 301.01571 * 22 21 20 44 44 H 1.09000 * 110.39159 * 21.41061 * 23 6 4 45 45 H 1.09002 * 110.39395 * 259.03300 * 23 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 8 2.7297 -1.6964 1.1193 6 7 1.7067 -0.2498 2.4546 7 6 0.8736 0.9278 2.7905 8 6 1.6012 1.5976 4.0073 9 6 2.5097 2.7572 3.5939 10 6 0.5535 1.9982 5.0633 11 7 1.0347 1.4596 6.3460 12 6 0.8331 2.0004 7.5879 13 1 0.4846 3.0182 7.6835 14 6 1.0768 1.2406 8.7236 15 7 1.3231 -0.0477 8.6132 16 14 1.0550 2.0463 10.4089 17 1 -0.3196 1.9884 10.9675 18 1 1.9876 1.3271 11.3135 19 1 1.4799 3.4638 10.2852 20 6 1.7691 0.2229 6.0337 21 6 2.3966 0.4292 4.6452 22 6 3.8946 0.7285 4.7303 23 6 2.1008 -0.8063 3.7693 24 6 2.0401 -0.7213 -1.2491 25 9 1.5737 -2.0403 -1.2491 26 9 1.5738 -0.0619 -2.3915 27 9 3.4391 -0.7218 -1.2488 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 0.8396 1.6211 1.9501 32 1 -0.1340 0.6145 3.0643 33 1 3.2385 2.4053 2.8638 34 1 1.9074 3.5511 3.1524 35 1 3.0306 3.1413 4.4711 36 1 -0.4155 1.5648 4.8156 37 1 0.4749 3.0839 5.1193 38 1 1.4930 -0.5788 9.4070 39 1 2.5497 0.0538 6.7756 40 1 1.0834 -0.6241 6.0120 41 1 4.4073 -0.1127 5.1968 42 1 4.2914 0.8847 3.7271 43 1 4.0524 1.6266 5.3274 44 1 2.9940 -1.4229 3.6685 45 1 1.2835 -1.3876 4.1962 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000982444074.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:03:06 Heat of formation + Delta-G solvation = -157.863979 kcal Electronic energy + Delta-G solvation = -31277.821303 eV Core-core repulsion = 26688.091244 eV Total energy + Delta-G solvation = -4589.730059 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.161 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -50.21351 -47.73908 -47.60684 -40.64653 -38.82231 -35.23890 -34.30256 -32.79078 -31.65817 -30.65292 -27.54408 -26.75537 -25.97282 -25.72540 -25.07911 -23.40253 -21.98176 -20.32903 -19.69061 -18.74634 -18.48688 -18.10291 -17.28358 -16.97284 -16.52371 -15.78753 -15.32206 -14.79460 -14.59670 -14.54179 -14.49419 -14.19235 -14.03722 -13.82079 -13.78148 -13.68051 -13.50806 -13.41554 -13.21083 -12.79748 -12.66463 -12.36661 -12.13654 -12.09763 -11.92462 -11.85167 -11.67050 -11.35246 -11.28977 -10.89678 -10.83861 -10.64781 -10.25030 -10.04252 -10.02585 -9.87773 -9.78745 -9.64895 -8.71196 -8.65672 -6.89873 -5.84828 -3.18787 2.34108 2.40934 2.87364 3.34096 3.40408 3.41827 3.50010 3.83751 3.84759 4.36091 4.40782 4.55802 4.59976 4.66949 4.82917 5.04942 5.15267 5.23195 5.33984 5.40060 5.44619 5.48854 5.54501 5.65403 5.67114 5.76663 5.89172 5.99577 6.02420 6.11992 6.16382 6.22539 6.36026 6.40778 6.57132 6.64606 6.71733 6.84333 7.30758 7.48138 7.49754 7.68378 7.94716 8.17474 9.08551 9.70823 10.42116 11.28892 Molecular weight = 334.16amu Principal moments of inertia in cm(-1) A = 0.028556 B = 0.003021 C = 0.002965 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 980.289245 B = 9267.396121 C = 9439.689927 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.159 4.159 3 H 0.137 0.863 4 C 0.540 3.460 5 O -0.529 6.529 6 N -0.609 5.609 7 C 0.104 3.896 8 C -0.080 4.080 9 C -0.122 4.122 10 C 0.144 3.856 11 N -0.591 5.591 12 C -0.232 4.232 13 H 0.076 0.924 14 C -0.002 4.002 15 N -0.914 5.914 16 Si 0.910 3.090 17 H -0.288 1.288 18 H -0.290 1.290 19 H -0.280 1.280 20 C 0.179 3.821 21 C -0.094 4.094 22 C -0.120 4.120 23 C 0.119 3.881 24 C 0.474 3.526 25 F -0.172 7.172 26 F -0.183 7.183 27 F -0.173 7.173 28 H 0.076 0.924 29 H 0.090 0.910 30 H 0.081 0.919 31 H 0.075 0.925 32 H 0.083 0.917 33 H 0.050 0.950 34 H 0.050 0.950 35 H 0.067 0.933 36 H 0.021 0.979 37 H 0.045 0.955 38 H 0.254 0.746 39 H 0.078 0.922 40 H 0.026 0.974 41 H 0.052 0.948 42 H 0.044 0.956 43 H 0.062 0.938 44 H 0.080 0.920 45 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.508 2.764 -17.734 17.956 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.182 4.182 3 H 0.155 0.845 4 C 0.326 3.674 5 O -0.405 6.405 6 N -0.341 5.341 7 C -0.019 4.019 8 C -0.082 4.082 9 C -0.179 4.179 10 C 0.017 3.983 11 N -0.315 5.315 12 C -0.360 4.360 13 H 0.094 0.906 14 C -0.200 4.200 15 N -0.560 5.560 16 Si 0.740 3.260 17 H -0.215 1.215 18 H -0.216 1.216 19 H -0.206 1.206 20 C 0.053 3.947 21 C -0.096 4.096 22 C -0.177 4.177 23 C -0.002 4.002 24 C 0.419 3.581 25 F -0.153 7.153 26 F -0.164 7.164 27 F -0.155 7.155 28 H 0.095 0.905 29 H 0.109 0.891 30 H 0.100 0.900 31 H 0.093 0.907 32 H 0.101 0.899 33 H 0.069 0.931 34 H 0.069 0.931 35 H 0.086 0.914 36 H 0.038 0.962 37 H 0.063 0.937 38 H 0.065 0.935 39 H 0.096 0.904 40 H 0.044 0.956 41 H 0.071 0.929 42 H 0.063 0.937 43 H 0.081 0.919 44 H 0.099 0.901 45 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -0.079 2.103 -17.663 17.788 hybrid contribution -0.024 0.275 0.701 0.753 sum -0.104 2.378 -16.962 17.128 Atomic orbital electron populations 1.21982 0.89289 1.04914 1.05171 1.22569 1.01452 1.02915 0.91245 0.84531 1.19223 0.80780 0.84514 0.82840 1.90808 1.38041 1.25982 1.85685 1.48863 1.50544 1.29765 1.04976 1.23269 0.94413 0.86450 0.97800 1.22780 0.96293 0.95045 0.94064 1.21624 0.98594 0.96351 1.01316 1.21423 0.93128 0.97362 0.86410 1.44431 1.60341 1.25953 1.00777 1.18966 1.40385 0.95545 0.81112 0.90649 1.24857 1.01912 0.95311 0.97874 1.69919 1.53424 1.04526 1.28144 0.86173 0.77485 0.78435 0.83951 1.21491 1.21577 1.20598 1.21271 0.95138 0.88736 0.89604 1.22536 0.96024 0.92677 0.98369 1.21644 0.93785 1.01898 1.00370 1.22679 1.01088 0.96265 0.80183 1.19755 0.75955 0.77893 0.84471 1.93205 1.88280 1.37160 1.96654 1.93176 1.88591 1.80886 1.53774 1.93217 1.29245 1.96350 1.96653 0.90536 0.89135 0.89988 0.90710 0.89939 0.93147 0.93065 0.91425 0.96174 0.93691 0.93550 0.90366 0.95645 0.92880 0.93714 0.91855 0.90142 0.90256 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.23 8.70 37.16 0.32 -0.90 16 2 C -0.16 -1.62 2.04 -91.77 -0.19 -1.81 16 3 H 0.14 1.06 7.95 -51.93 -0.41 0.64 16 4 C 0.54 7.54 7.04 -10.99 -0.08 7.47 16 5 O -0.53 -9.39 15.10 5.55 0.08 -9.30 16 6 N -0.61 -8.27 3.31 -167.87 -0.55 -8.83 16 7 C 0.10 1.22 4.51 -1.10 0.00 1.22 16 8 C -0.08 -1.16 1.14 -150.80 -0.17 -1.34 16 9 C -0.12 -1.56 7.61 37.16 0.28 -1.28 16 10 C 0.14 2.60 6.50 -3.11 -0.02 2.57 16 11 N -0.59 -13.71 3.38 -170.99 -0.58 -14.29 16 12 C -0.23 -6.04 10.28 -15.06 -0.15 -6.19 16 13 H 0.08 1.90 7.85 -52.48 -0.41 1.49 16 14 C 0.00 -0.06 5.38 -17.43 -0.09 -0.15 16 15 N -0.91 -25.55 10.87 55.49 0.60 -24.95 16 16 Si 0.91 21.09 29.56 -169.99 -5.03 16.06 16 17 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 18 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 19 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 20 C 0.18 3.89 4.82 -3.27 -0.02 3.88 16 21 C -0.09 -1.56 1.07 -152.33 -0.16 -1.73 16 22 C -0.12 -1.90 7.42 37.16 0.28 -1.62 16 23 C 0.12 1.87 6.22 -2.47 -0.02 1.86 16 24 C 0.47 5.61 2.42 37.16 0.09 5.70 16 25 F -0.17 -2.33 15.88 2.25 0.04 -2.29 16 26 F -0.18 -1.91 16.80 2.25 0.04 -1.87 16 27 F -0.17 -2.38 16.40 2.25 0.04 -2.34 16 28 H 0.08 0.67 7.80 -51.93 -0.41 0.26 16 29 H 0.09 0.64 5.34 -51.93 -0.28 0.36 16 30 H 0.08 0.50 7.80 -51.93 -0.41 0.09 16 31 H 0.07 0.66 6.36 -51.93 -0.33 0.33 16 32 H 0.08 0.96 7.12 -51.92 -0.37 0.59 16 33 H 0.05 0.61 7.17 -51.93 -0.37 0.23 16 34 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 35 H 0.07 0.98 7.09 -51.93 -0.37 0.61 16 36 H 0.02 0.37 7.16 -51.93 -0.37 0.00 16 37 H 0.04 0.79 7.88 -51.93 -0.41 0.38 16 38 H 0.25 6.95 8.31 -40.82 -0.34 6.61 16 39 H 0.08 1.95 6.49 -51.93 -0.34 1.62 16 40 H 0.03 0.61 7.10 -51.93 -0.37 0.24 16 41 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 42 H 0.04 0.65 7.16 -51.92 -0.37 0.27 16 43 H 0.06 1.06 7.10 -51.93 -0.37 0.69 16 44 H 0.08 1.31 7.62 -51.93 -0.40 0.91 16 45 H 0.08 1.29 7.15 -51.93 -0.37 0.92 16 LS Contribution 354.48 15.07 5.34 5.34 Total: -1.00 -30.34 354.48 -6.28 -36.62 By element: Atomic # 1 Polarization: 4.49 SS G_CDS: -6.33 Total: -1.83 kcal Atomic # 6 Polarization: 7.61 SS G_CDS: 0.07 Total: 7.68 kcal Atomic # 7 Polarization: -47.53 SS G_CDS: -0.53 Total: -48.06 kcal Atomic # 8 Polarization: -9.39 SS G_CDS: 0.08 Total: -9.30 kcal Atomic # 9 Polarization: -6.61 SS G_CDS: 0.11 Total: -6.50 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.03 Total: 16.06 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -30.34 -6.28 -36.62 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000982444074.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -121.243 kcal (2) G-P(sol) polarization free energy of solvation -30.344 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -151.587 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.277 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.621 kcal (6) G-S(sol) free energy of system = (1) + (5) -157.864 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds