Wall clock time and date at job start Tue Mar 31 2020 18:03:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09000 * 109.47050 * 2 1 4 4 C 1.50699 * 109.46817 * 119.99747 * 2 1 3 5 5 O 1.21283 * 120.00241 * 120.00660 * 4 2 1 6 6 N 1.34778 * 120.00259 * 299.99674 * 4 2 1 7 7 C 1.48113 * 127.84381 * 0.02562 * 6 4 2 8 8 C 1.56805 * 104.74838 * 220.29245 * 7 6 4 9 9 C 1.53001 * 112.93290 * 96.96997 * 8 7 6 10 10 C 1.54055 * 109.11166 * 223.62786 * 8 7 6 11 11 N 1.47207 * 106.25202 * 129.74310 * 10 8 7 12 12 C 1.36943 * 126.69990 * 148.61818 * 11 10 8 13 13 H 1.08003 * 119.99648 * 345.36712 * 12 11 10 14 14 C 1.38804 * 119.99839 * 165.36728 * 12 11 10 15 15 N 1.31622 * 120.00247 * 350.70109 * 14 12 11 16 16 Si 1.86810 * 119.99877 * 170.70063 * 14 12 11 17 17 H 1.48493 * 109.47005 * 90.00021 * 16 14 12 18 18 H 1.48501 * 109.47040 * 209.99959 * 16 14 12 19 19 H 1.48500 * 109.46752 * 329.99813 * 16 14 12 20 20 C 1.47193 * 106.59660 * 328.35059 * 11 10 8 21 21 C 1.53764 * 106.40714 * 31.56949 * 20 11 10 22 22 C 1.52996 * 112.06170 * 103.41837 * 21 20 11 23 23 C 1.48104 * 127.84947 * 180.02562 * 6 4 2 24 24 C 1.52997 * 109.47422 * 239.99630 * 2 1 3 25 25 F 1.39900 * 109.47109 * 300.00553 * 24 2 1 26 26 F 1.39901 * 109.46940 * 59.99960 * 24 2 1 27 27 F 1.39895 * 109.47211 * 180.02562 * 24 2 1 28 28 H 1.09000 * 109.47050 * 180.02562 * 1 2 3 29 29 H 1.09007 * 109.47351 * 300.00383 * 1 2 3 30 30 H 1.08998 * 109.46916 * 60.00460 * 1 2 3 31 31 H 1.09004 * 110.39120 * 338.59204 * 7 6 4 32 32 H 1.09010 * 110.39114 * 100.85549 * 7 6 4 33 33 H 1.09002 * 109.46988 * 303.35153 * 9 8 7 34 34 H 1.08996 * 109.47190 * 63.34707 * 9 8 7 35 35 H 1.09005 * 109.47581 * 183.35387 * 9 8 7 36 36 H 1.09001 * 110.20919 * 10.51904 * 10 8 7 37 37 H 1.08997 * 110.07539 * 248.89375 * 10 8 7 38 38 H 0.97001 * 120.00021 * 180.02562 * 15 14 12 39 39 H 1.09005 * 110.07173 * 150.81119 * 20 11 10 40 40 H 1.09003 * 110.07129 * 272.33890 * 20 11 10 41 41 H 1.09002 * 109.47466 * 61.02114 * 22 21 20 42 42 H 1.09007 * 109.46792 * 181.01403 * 22 21 20 43 43 H 1.08999 * 109.47608 * 301.01571 * 22 21 20 44 44 H 1.09000 * 110.39159 * 21.41061 * 23 6 4 45 45 H 1.09002 * 110.39395 * 259.03300 * 23 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 8 2.7297 -1.6964 1.1193 6 7 1.7067 -0.2498 2.4546 7 6 0.8736 0.9278 2.7905 8 6 1.6012 1.5976 4.0073 9 6 2.5097 2.7572 3.5939 10 6 0.5535 1.9982 5.0633 11 7 1.0347 1.4596 6.3460 12 6 0.8331 2.0004 7.5879 13 1 0.4846 3.0182 7.6835 14 6 1.0768 1.2406 8.7236 15 7 1.3231 -0.0477 8.6132 16 14 1.0550 2.0463 10.4089 17 1 -0.3196 1.9884 10.9675 18 1 1.9876 1.3271 11.3135 19 1 1.4799 3.4638 10.2852 20 6 1.7691 0.2229 6.0337 21 6 2.3966 0.4292 4.6452 22 6 3.8946 0.7285 4.7303 23 6 2.1008 -0.8063 3.7693 24 6 2.0401 -0.7213 -1.2491 25 9 1.5737 -2.0403 -1.2491 26 9 1.5738 -0.0619 -2.3915 27 9 3.4391 -0.7218 -1.2488 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 0.8396 1.6211 1.9501 32 1 -0.1340 0.6145 3.0643 33 1 3.2385 2.4053 2.8638 34 1 1.9074 3.5511 3.1524 35 1 3.0306 3.1413 4.4711 36 1 -0.4155 1.5648 4.8156 37 1 0.4749 3.0839 5.1193 38 1 1.4930 -0.5788 9.4070 39 1 2.5497 0.0538 6.7756 40 1 1.0834 -0.6241 6.0120 41 1 4.4073 -0.1127 5.1968 42 1 4.2914 0.8847 3.7271 43 1 4.0524 1.6266 5.3274 44 1 2.9940 -1.4229 3.6685 45 1 1.2835 -1.3876 4.1962 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000982444074.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:03:05 Heat of formation + Delta-G solvation = -175.902144 kcal Electronic energy + Delta-G solvation = -31278.603497 eV Core-core repulsion = 26688.091244 eV Total energy + Delta-G solvation = -4590.512253 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.161 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -51.12371 -48.61857 -48.58005 -41.86419 -40.06620 -36.69854 -35.31176 -34.27792 -32.96759 -32.31840 -28.84364 -27.59549 -27.52282 -26.85243 -26.55831 -24.59943 -23.31522 -21.75369 -20.77310 -19.69055 -19.49693 -19.32226 -18.71683 -18.19320 -17.74226 -16.96806 -16.63019 -16.27538 -15.95779 -15.74438 -15.46779 -15.34550 -15.01627 -14.97932 -14.90639 -14.77092 -14.70418 -14.64577 -14.14639 -13.96471 -13.76595 -13.49260 -13.45884 -13.26127 -13.13102 -13.09401 -12.92211 -12.69155 -12.51628 -12.49974 -12.30712 -12.09634 -11.88351 -11.75649 -11.40085 -11.31430 -11.13133 -10.99009 -10.64954 -9.84954 -8.80173 -7.86752 -5.20740 1.35321 1.40509 1.48491 1.49368 1.58010 1.88957 2.51642 2.63764 2.91566 2.99595 3.33806 3.39994 3.41063 3.63959 3.80914 3.89882 3.92829 4.00114 4.12342 4.22216 4.30253 4.42690 4.54457 4.63136 4.64367 4.72203 4.76702 4.83861 4.90818 4.91738 5.00434 5.04984 5.12339 5.19876 5.21931 5.31467 5.39536 5.51668 5.55846 5.63311 5.78134 6.25285 6.41237 6.86406 7.10200 7.79364 8.50445 9.26164 Molecular weight = 334.16amu Principal moments of inertia in cm(-1) A = 0.028556 B = 0.003021 C = 0.002965 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 980.289245 B = 9267.396121 C = 9439.689927 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.148 4.148 3 H 0.174 0.826 4 C 0.538 3.462 5 O -0.573 6.573 6 N -0.604 5.604 7 C 0.108 3.892 8 C -0.072 4.072 9 C -0.117 4.117 10 C 0.139 3.861 11 N -0.615 5.615 12 C -0.235 4.235 13 H 0.082 0.918 14 C -0.060 4.060 15 N -0.947 5.947 16 Si 0.970 3.030 17 H -0.287 1.287 18 H -0.299 1.299 19 H -0.268 1.268 20 C 0.190 3.810 21 C -0.086 4.086 22 C -0.112 4.112 23 C 0.125 3.875 24 C 0.469 3.531 25 F -0.187 7.187 26 F -0.172 7.172 27 F -0.188 7.188 28 H 0.063 0.937 29 H 0.104 0.896 30 H 0.107 0.893 31 H 0.122 0.878 32 H 0.089 0.911 33 H 0.064 0.936 34 H 0.081 0.919 35 H 0.045 0.955 36 H 0.027 0.973 37 H 0.054 0.946 38 H 0.246 0.754 39 H 0.036 0.964 40 H -0.006 1.006 41 H 0.042 0.958 42 H 0.066 0.934 43 H 0.051 0.949 44 H 0.070 0.930 45 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.367 5.354 -20.200 20.943 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.170 4.170 3 H 0.191 0.809 4 C 0.326 3.674 5 O -0.452 6.452 6 N -0.335 5.335 7 C -0.014 4.014 8 C -0.074 4.074 9 C -0.174 4.174 10 C 0.014 3.986 11 N -0.339 5.339 12 C -0.365 4.365 13 H 0.100 0.900 14 C -0.254 4.254 15 N -0.595 5.595 16 Si 0.799 3.201 17 H -0.214 1.214 18 H -0.225 1.225 19 H -0.193 1.193 20 C 0.064 3.936 21 C -0.089 4.089 22 C -0.169 4.169 23 C 0.002 3.998 24 C 0.414 3.586 25 F -0.168 7.168 26 F -0.154 7.154 27 F -0.169 7.169 28 H 0.082 0.918 29 H 0.123 0.877 30 H 0.126 0.874 31 H 0.140 0.860 32 H 0.107 0.893 33 H 0.083 0.917 34 H 0.100 0.900 35 H 0.064 0.936 36 H 0.045 0.955 37 H 0.073 0.927 38 H 0.055 0.945 39 H 0.055 0.945 40 H 0.012 0.988 41 H 0.061 0.939 42 H 0.085 0.915 43 H 0.071 0.929 44 H 0.088 0.912 45 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -0.964 4.739 -20.168 20.739 hybrid contribution 0.213 -0.545 1.438 1.552 sum -0.751 4.194 -18.730 19.208 Atomic orbital electron populations 1.22069 0.87180 1.04811 1.07106 1.22643 1.02916 1.03623 0.87846 0.80851 1.19900 0.79823 0.84040 0.83627 1.90797 1.40013 1.28081 1.86326 1.48806 1.50557 1.30057 1.04123 1.23383 0.93673 0.86236 0.98075 1.22745 0.95432 0.95001 0.94205 1.21600 0.98706 0.96152 1.00927 1.21654 0.94260 0.97734 0.84973 1.44708 1.61056 1.26273 1.01827 1.19358 1.38726 0.95806 0.82564 0.90030 1.25609 1.02786 0.95812 1.01200 1.70120 1.55333 1.05815 1.28250 0.85205 0.77029 0.77945 0.79899 1.21371 1.22532 1.19284 1.20980 0.93375 0.87691 0.91574 1.22335 0.96487 0.94514 0.95542 1.21561 0.93157 1.00950 1.01241 1.22380 1.00276 0.95594 0.81561 1.20061 0.75351 0.77567 0.85582 1.93178 1.88361 1.38503 1.96783 1.93196 1.88340 1.80481 1.53340 1.93190 1.30557 1.96381 1.96782 0.91808 0.87718 0.87447 0.85991 0.89296 0.91688 0.90007 0.93555 0.95542 0.92735 0.94471 0.94536 0.98768 0.93855 0.91545 0.92950 0.91188 0.91534 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.73 8.70 71.98 0.63 -1.10 16 2 C -0.15 -2.42 2.04 -11.54 -0.02 -2.44 16 3 H 0.17 1.59 7.95 -2.39 -0.02 1.57 16 4 C 0.54 13.70 7.04 87.66 0.62 14.31 16 5 O -0.57 -19.90 15.10 -3.04 -0.05 -19.95 16 6 N -0.60 -14.90 3.31 -803.40 -2.66 -17.55 16 7 C 0.11 2.10 4.51 87.40 0.39 2.49 16 8 C -0.07 -1.91 1.14 -49.78 -0.06 -1.96 16 9 C -0.12 -2.53 7.61 71.98 0.55 -1.98 16 10 C 0.14 4.78 6.50 86.60 0.56 5.34 16 11 N -0.61 -28.83 3.38 -694.90 -2.35 -31.18 16 12 C -0.24 -12.39 10.28 84.03 0.86 -11.53 16 13 H 0.08 4.08 7.85 -2.91 -0.02 4.06 16 14 C -0.06 -3.30 5.38 84.86 0.46 -2.84 16 15 N -0.95 -55.44 10.87 21.65 0.24 -55.21 16 16 Si 0.97 44.22 29.56 68.60 2.03 46.24 16 17 H -0.29 -12.89 7.11 99.48 0.71 -12.18 16 18 H -0.30 -13.90 7.11 99.48 0.71 -13.19 16 19 H -0.27 -11.52 7.11 99.48 0.71 -10.81 16 20 C 0.19 8.66 4.82 86.50 0.42 9.07 16 21 C -0.09 -2.87 1.07 -50.77 -0.05 -2.92 16 22 C -0.11 -3.53 7.42 71.98 0.53 -2.99 16 23 C 0.12 3.91 6.22 86.52 0.54 4.45 16 24 C 0.47 9.90 2.42 71.98 0.17 10.08 16 25 F -0.19 -4.84 15.88 44.97 0.71 -4.12 16 26 F -0.17 -3.03 16.80 44.97 0.76 -2.27 16 27 F -0.19 -4.82 16.40 44.97 0.74 -4.08 16 28 H 0.06 0.91 7.80 -2.39 -0.02 0.90 16 29 H 0.10 0.90 5.34 -2.38 -0.01 0.88 16 30 H 0.11 0.72 7.80 -2.39 -0.02 0.70 16 31 H 0.12 1.31 6.36 -2.39 -0.02 1.30 16 32 H 0.09 1.70 7.12 -2.38 -0.02 1.69 16 33 H 0.06 1.25 7.17 -2.39 -0.02 1.23 16 34 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 35 H 0.05 1.22 7.09 -2.38 -0.02 1.20 16 36 H 0.03 0.90 7.16 -2.39 -0.02 0.88 16 37 H 0.05 1.77 7.88 -2.39 -0.02 1.75 16 38 H 0.25 14.17 8.31 -92.71 -0.77 13.40 16 39 H 0.04 1.94 6.49 -2.38 -0.02 1.92 16 40 H -0.01 -0.28 7.10 -2.39 -0.02 -0.30 16 41 H 0.04 1.42 8.14 -2.39 -0.02 1.40 16 42 H 0.07 1.80 7.16 -2.38 -0.02 1.78 16 43 H 0.05 1.75 7.10 -2.39 -0.02 1.74 16 44 H 0.07 2.33 7.62 -2.39 -0.02 2.32 16 45 H 0.07 2.25 7.15 -2.39 -0.02 2.23 16 Total: -1.00 -70.42 354.48 6.03 -64.39 By element: Atomic # 1 Polarization: 4.74 SS G_CDS: 1.02 Total: 5.75 kcal Atomic # 6 Polarization: 12.37 SS G_CDS: 5.60 Total: 17.97 kcal Atomic # 7 Polarization: -99.17 SS G_CDS: -4.77 Total: -103.94 kcal Atomic # 8 Polarization: -19.90 SS G_CDS: -0.05 Total: -19.95 kcal Atomic # 9 Polarization: -12.68 SS G_CDS: 2.21 Total: -10.48 kcal Atomic # 14 Polarization: 44.22 SS G_CDS: 2.03 Total: 46.24 kcal Total: -70.42 6.03 -64.39 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000982444074.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -111.509 kcal (2) G-P(sol) polarization free energy of solvation -70.425 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -181.934 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.032 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.393 kcal (6) G-S(sol) free energy of system = (1) + (5) -175.902 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds