Wall clock time and date at job start Tue Mar 31 2020 18:06:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.35984 * 117.00299 * 2 1 4 4 C 1.38696 * 120.00394 * 179.97438 * 3 2 1 5 5 C 1.38129 * 120.00361 * 179.97438 * 4 3 2 6 6 C 1.38697 * 119.99566 * 359.97438 * 5 4 3 7 7 O 1.35987 * 119.99746 * 179.97438 * 6 5 4 8 8 C 1.42905 * 116.99708 * 5.11096 * 7 6 5 9 9 H 1.08999 * 109.47032 * 33.42600 * 8 7 6 10 10 C 1.52994 * 109.47330 * 273.42095 * 8 7 6 11 11 C 1.50701 * 109.46602 * 153.42585 * 8 7 6 12 12 O 1.21281 * 120.00411 * 14.45656 * 11 8 7 13 13 N 1.34778 * 119.99850 * 194.46177 * 11 8 7 14 14 C 1.47426 * 125.65236 * 174.72699 * 13 11 8 15 15 C 1.54910 * 104.83241 * 204.16090 * 14 13 11 16 16 C 1.55152 * 101.58204 * 322.98741 * 15 14 13 17 17 H 1.09001 * 110.87582 * 277.06648 * 16 15 14 18 18 N 1.46499 * 110.71923 * 153.86679 * 16 15 14 19 19 C 1.36936 * 120.00089 * 91.48183 * 18 16 15 20 20 H 1.07994 * 119.99978 * 359.97438 * 19 18 16 21 21 C 1.38813 * 120.00036 * 180.02562 * 19 18 16 22 22 N 1.31618 * 119.99990 * 359.97438 * 21 19 18 23 23 Si 1.86802 * 120.00067 * 179.97438 * 21 19 18 24 24 H 1.48494 * 109.46930 * 359.97438 * 23 21 19 25 25 H 1.48497 * 109.47210 * 119.99822 * 23 21 19 26 26 H 1.48500 * 109.46844 * 239.99763 * 23 21 19 27 27 C 1.47031 * 125.64651 * 354.76377 * 13 11 8 28 28 C 1.38695 * 120.00408 * 0.27412 * 6 5 4 29 29 C 1.38134 * 119.99588 * 359.53262 * 28 6 5 30 30 H 1.08999 * 109.47395 * 300.00591 * 1 2 3 31 31 H 1.09005 * 109.47131 * 60.00374 * 1 2 3 32 32 H 1.09001 * 109.47467 * 180.02562 * 1 2 3 33 33 H 1.08006 * 119.99588 * 359.97438 * 4 3 2 34 34 H 1.07994 * 120.00073 * 179.97438 * 5 4 3 35 35 H 1.08994 * 109.47407 * 184.42284 * 10 8 7 36 36 H 1.09005 * 109.47487 * 304.42949 * 10 8 7 37 37 H 1.09006 * 109.47073 * 64.42282 * 10 8 7 38 38 H 1.08996 * 110.36407 * 323.00028 * 14 13 11 39 39 H 1.09005 * 110.36385 * 85.21265 * 14 13 11 40 40 H 1.08997 * 111.00342 * 204.91694 * 15 14 13 41 41 H 1.08992 * 111.00257 * 81.06354 * 15 14 13 42 42 H 0.97001 * 119.99971 * 271.47400 * 18 16 15 43 43 H 0.96998 * 120.00114 * 179.97438 * 22 21 19 44 44 H 1.08997 * 109.87834 * 59.49146 * 27 13 11 45 45 H 1.09003 * 110.00659 * 298.39481 * 27 13 11 46 46 H 1.07996 * 120.00047 * 179.73201 * 28 6 5 47 47 H 1.07999 * 119.99702 * 180.22841 * 29 28 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0463 1.2116 0.0000 4 6 3.4314 1.2842 0.0005 5 6 4.0586 2.5149 0.0000 6 6 3.3031 3.6781 -0.0016 7 8 3.9205 4.8897 -0.0016 8 6 5.3452 4.8919 -0.1133 9 1 5.6617 4.0580 -0.7398 10 6 5.9661 4.7493 1.2777 11 6 5.7982 6.1877 -0.7352 12 8 5.0318 7.1245 -0.8111 13 7 7.0552 6.3055 -1.2070 14 6 7.5947 7.4692 -1.9337 15 6 8.7734 6.9055 -2.7659 16 6 9.3667 5.8530 -1.7925 17 1 10.0393 6.3231 -1.0750 18 7 10.0588 4.7948 -2.5324 19 6 11.3979 4.9068 -2.7956 20 1 11.9438 5.7754 -2.4582 21 6 12.0536 3.9043 -3.4971 22 7 11.3882 2.8460 -3.9088 23 14 13.8802 4.0574 -3.8569 24 1 14.3909 5.3320 -3.2915 25 1 14.6035 2.9166 -3.2400 26 1 14.0980 4.0456 -5.3258 27 6 8.1153 5.2943 -1.0829 28 6 1.9181 3.6056 0.0031 29 6 1.2910 2.3748 -0.0004 30 1 -0.3634 0.5139 0.8899 31 1 -0.3634 0.5138 -0.8901 32 1 -0.3634 -1.0277 0.0005 33 1 4.0196 0.3784 0.0014 34 1 5.1370 2.5714 0.0008 35 1 7.0504 4.8297 1.2015 36 1 5.5879 5.5388 1.9271 37 1 5.7022 3.7777 1.6955 38 1 6.8346 7.8920 -2.5905 39 1 7.9504 8.2234 -1.2315 40 1 9.5017 7.6850 -2.9896 41 1 8.4152 6.4335 -3.6807 42 1 9.5684 4.0147 -2.8356 43 1 11.8462 2.1456 -4.3993 44 1 7.8008 4.3669 -1.5615 45 1 8.3359 5.1123 -0.0310 46 1 1.3299 4.5113 0.0062 47 1 0.2125 2.3183 -0.0005 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001019214847.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:06:00 Heat of formation + Delta-G solvation = -56.877163 kcal Electronic energy + Delta-G solvation = -28458.426609 eV Core-core repulsion = 24414.932407 eV Total energy + Delta-G solvation = -4043.494202 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.87817 -40.03427 -38.99759 -37.37627 -36.39835 -34.18549 -32.65103 -31.49083 -31.07885 -29.60474 -29.34691 -27.75410 -27.38172 -25.07619 -23.72459 -23.23910 -22.66207 -21.56576 -20.25857 -19.33131 -18.77480 -17.87783 -17.57172 -17.08148 -16.33666 -16.10419 -15.98091 -15.61274 -15.33977 -15.00681 -14.60558 -14.30095 -14.02551 -13.71733 -13.61736 -13.44767 -13.36098 -13.06868 -12.80577 -12.71372 -12.62434 -12.45306 -12.14388 -12.06232 -11.84959 -11.62593 -11.53529 -11.23289 -10.91729 -10.89652 -10.77279 -10.67404 -10.40248 -10.14503 -9.86267 -9.65020 -9.30572 -9.05609 -8.52577 -7.92499 -7.13964 -5.90600 -3.21547 1.02547 1.26263 2.45074 2.62681 3.04482 3.35731 3.41575 3.44018 3.48723 3.52205 4.29883 4.49140 4.53594 4.56308 4.66011 4.75982 4.76720 4.83981 4.92135 5.00743 5.05347 5.12753 5.15234 5.26268 5.36971 5.40723 5.45145 5.50426 5.55369 5.66449 5.69462 5.75467 5.79929 5.95413 6.06711 6.07143 6.09204 6.13269 6.27958 6.33113 6.40007 6.54212 6.81189 7.03931 7.27856 7.55907 7.59461 8.16301 8.26522 9.38581 9.90919 10.25494 11.31487 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.012947 B = 0.002498 C = 0.002169 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2162.066547 B =11207.786396 C =12904.005955 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.319 6.319 3 C 0.086 3.914 4 C -0.107 4.107 5 C -0.170 4.170 6 C 0.098 3.902 7 O -0.286 6.286 8 C 0.071 3.929 9 H 0.098 0.902 10 C -0.177 4.177 11 C 0.534 3.466 12 O -0.528 6.528 13 N -0.609 5.609 14 C 0.109 3.891 15 C -0.155 4.155 16 C 0.173 3.827 17 H 0.070 0.930 18 N -0.715 5.715 19 C -0.246 4.246 20 H 0.074 0.926 21 C -0.009 4.009 22 N -0.929 5.929 23 Si 0.909 3.091 24 H -0.279 1.279 25 H -0.291 1.291 26 H -0.291 1.291 27 C 0.083 3.917 28 C -0.111 4.111 29 C -0.168 4.168 30 H 0.054 0.946 31 H 0.054 0.946 32 H 0.098 0.902 33 H 0.135 0.865 34 H 0.139 0.861 35 H 0.084 0.916 36 H 0.074 0.926 37 H 0.075 0.925 38 H 0.071 0.929 39 H 0.066 0.934 40 H 0.078 0.922 41 H 0.075 0.925 42 H 0.386 0.614 43 H 0.257 0.743 44 H 0.072 0.928 45 H 0.071 0.929 46 H 0.135 0.865 47 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.913 -1.456 10.078 21.480 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.233 6.233 3 C 0.042 3.958 4 C -0.126 4.126 5 C -0.189 4.189 6 C 0.053 3.947 7 O -0.199 6.199 8 C 0.011 3.989 9 H 0.116 0.884 10 C -0.234 4.234 11 C 0.321 3.679 12 O -0.404 6.404 13 N -0.344 5.344 14 C -0.013 4.013 15 C -0.197 4.197 16 C 0.061 3.939 17 H 0.088 0.912 18 N -0.356 5.356 19 C -0.377 4.377 20 H 0.092 0.908 21 C -0.206 4.206 22 N -0.577 5.577 23 Si 0.739 3.261 24 H -0.204 1.204 25 H -0.218 1.218 26 H -0.218 1.218 27 C -0.041 4.041 28 C -0.129 4.129 29 C -0.187 4.187 30 H 0.072 0.928 31 H 0.073 0.927 32 H 0.117 0.883 33 H 0.153 0.847 34 H 0.157 0.843 35 H 0.103 0.897 36 H 0.093 0.907 37 H 0.094 0.906 38 H 0.090 0.910 39 H 0.084 0.916 40 H 0.097 0.903 41 H 0.094 0.906 42 H 0.220 0.780 43 H 0.067 0.933 44 H 0.090 0.910 45 H 0.089 0.911 46 H 0.153 0.847 47 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -19.205 -0.937 10.068 21.704 hybrid contribution 0.783 -0.324 -0.445 0.957 sum -18.422 -1.260 9.623 20.822 Atomic orbital electron populations 1.23030 0.78627 1.03845 1.01247 1.86078 1.21141 1.26719 1.89342 1.18903 0.92288 0.84222 1.00400 1.20237 0.91380 0.98124 1.02871 1.21189 1.00532 0.91395 1.05749 1.18955 0.92298 0.84251 0.99200 1.86203 1.19443 1.26248 1.88032 1.22154 0.80434 0.97539 0.98806 0.88392 1.22354 1.02205 1.04026 0.94853 1.19628 0.80868 0.88848 0.78604 1.90709 1.52987 1.40192 1.56477 1.48363 1.09969 1.20004 1.56109 1.22302 0.96379 0.87893 0.94749 1.23591 0.95973 1.00511 0.99580 1.21170 0.90365 0.89893 0.92447 0.91235 1.42364 1.07474 1.20957 1.64762 1.19258 0.84868 1.03742 1.29831 0.90834 1.24774 0.98279 0.96742 1.00779 1.69662 1.35291 1.09861 1.42876 0.86104 0.84939 0.77310 0.77712 1.20448 1.21758 1.21779 1.22651 0.88577 0.91766 1.01083 1.20205 0.91359 0.98081 1.03300 1.21032 0.99998 0.91357 1.06280 0.92771 0.92715 0.88340 0.84663 0.84316 0.89727 0.90653 0.90588 0.91039 0.91608 0.90306 0.90628 0.77996 0.93348 0.90975 0.91069 0.84747 0.84859 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.17 9.81 101.05 0.99 1.16 16 2 O -0.32 -3.23 10.50 -19.69 -0.21 -3.44 16 3 C 0.09 0.94 6.69 -39.24 -0.26 0.68 16 4 C -0.11 -1.18 9.98 -39.45 -0.39 -1.57 16 5 C -0.17 -1.92 8.36 -39.45 -0.33 -2.25 16 6 C 0.10 1.24 6.62 -39.24 -0.26 0.98 16 7 O -0.29 -4.12 9.37 -39.18 -0.37 -4.49 16 8 C 0.07 0.92 2.02 -27.89 -0.06 0.86 16 9 H 0.10 1.16 5.79 -51.93 -0.30 0.86 16 10 C -0.18 -1.87 9.17 37.15 0.34 -1.53 16 11 C 0.53 8.47 7.15 -10.98 -0.08 8.39 16 12 O -0.53 -10.20 16.86 -13.93 -0.23 -10.43 16 13 N -0.61 -9.08 3.33 -170.51 -0.57 -9.64 16 14 C 0.11 1.59 6.89 -2.53 -0.02 1.57 16 15 C -0.16 -2.48 6.77 -24.58 -0.17 -2.64 16 16 C 0.17 3.02 3.61 -66.10 -0.24 2.78 16 17 H 0.07 1.20 8.09 -51.93 -0.42 0.78 16 18 N -0.72 -16.16 5.22 -51.66 -0.27 -16.43 16 19 C -0.25 -6.30 9.96 -15.06 -0.15 -6.45 16 20 H 0.07 1.83 7.83 -52.49 -0.41 1.42 16 21 C -0.01 -0.25 5.50 -17.43 -0.10 -0.34 16 22 N -0.93 -26.55 13.06 55.49 0.72 -25.83 16 23 Si 0.91 21.28 29.55 -169.99 -5.02 16.25 16 24 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 25 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 26 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 27 C 0.08 1.21 5.83 -3.06 -0.02 1.19 16 28 C -0.11 -1.24 9.98 -39.45 -0.39 -1.64 16 29 C -0.17 -1.66 9.03 -39.45 -0.36 -2.01 16 30 H 0.05 0.27 7.66 -51.93 -0.40 -0.13 16 31 H 0.05 0.29 7.66 -51.93 -0.40 -0.11 16 32 H 0.10 0.41 8.14 -51.93 -0.42 -0.01 16 33 H 0.14 1.30 8.06 -52.48 -0.42 0.87 16 34 H 0.14 1.38 5.44 -52.49 -0.29 1.10 16 35 H 0.08 0.83 5.73 -51.93 -0.30 0.53 16 36 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 37 H 0.08 0.69 7.07 -51.93 -0.37 0.32 16 38 H 0.07 1.06 8.09 -51.93 -0.42 0.64 16 39 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 40 H 0.08 1.21 8.14 -51.93 -0.42 0.79 16 41 H 0.07 1.33 8.14 -51.93 -0.42 0.90 16 42 H 0.39 9.31 7.56 -40.82 -0.31 9.00 16 43 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 44 H 0.07 1.07 7.46 -51.93 -0.39 0.68 16 45 H 0.07 0.91 6.18 -51.93 -0.32 0.59 16 46 H 0.13 1.36 8.06 -52.49 -0.42 0.93 16 47 H 0.13 0.96 6.29 -52.49 -0.33 0.63 16 LS Contribution 382.57 15.07 5.77 5.77 Total: -1.00 -32.13 382.57 -8.40 -40.54 By element: Atomic # 1 Polarization: 15.28 SS G_CDS: -6.74 Total: 8.54 kcal Atomic # 6 Polarization: 0.65 SS G_CDS: -1.48 Total: -0.83 kcal Atomic # 7 Polarization: -51.79 SS G_CDS: -0.11 Total: -51.90 kcal Atomic # 8 Polarization: -17.55 SS G_CDS: -0.81 Total: -18.36 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.02 Total: 16.25 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -32.13 -8.40 -40.54 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001019214847.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.341 kcal (2) G-P(sol) polarization free energy of solvation -32.133 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.473 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.404 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.537 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.877 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds