Wall clock time and date at job start Tue Mar 31 2020 18:05:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.35984 * 117.00299 * 2 1 4 4 C 1.38696 * 120.00394 * 179.97438 * 3 2 1 5 5 C 1.38129 * 120.00361 * 179.97438 * 4 3 2 6 6 C 1.38697 * 119.99566 * 359.97438 * 5 4 3 7 7 O 1.35987 * 119.99746 * 179.97438 * 6 5 4 8 8 C 1.42905 * 116.99708 * 5.11096 * 7 6 5 9 9 H 1.08999 * 109.47032 * 33.42600 * 8 7 6 10 10 C 1.52994 * 109.47330 * 273.42095 * 8 7 6 11 11 C 1.50701 * 109.46602 * 153.42585 * 8 7 6 12 12 O 1.21281 * 120.00411 * 14.45656 * 11 8 7 13 13 N 1.34778 * 119.99850 * 194.46177 * 11 8 7 14 14 C 1.47426 * 125.65236 * 174.72699 * 13 11 8 15 15 C 1.54910 * 104.83241 * 204.16090 * 14 13 11 16 16 C 1.55152 * 101.58204 * 322.98741 * 15 14 13 17 17 H 1.09001 * 110.87582 * 277.06648 * 16 15 14 18 18 N 1.46499 * 110.71923 * 153.86679 * 16 15 14 19 19 C 1.36936 * 120.00089 * 91.48183 * 18 16 15 20 20 H 1.07994 * 119.99978 * 359.97438 * 19 18 16 21 21 C 1.38813 * 120.00036 * 180.02562 * 19 18 16 22 22 N 1.31618 * 119.99990 * 359.97438 * 21 19 18 23 23 Si 1.86802 * 120.00067 * 179.97438 * 21 19 18 24 24 H 1.48494 * 109.46930 * 359.97438 * 23 21 19 25 25 H 1.48497 * 109.47210 * 119.99822 * 23 21 19 26 26 H 1.48500 * 109.46844 * 239.99763 * 23 21 19 27 27 C 1.47031 * 125.64651 * 354.76377 * 13 11 8 28 28 C 1.38695 * 120.00408 * 0.27412 * 6 5 4 29 29 C 1.38134 * 119.99588 * 359.53262 * 28 6 5 30 30 H 1.08999 * 109.47395 * 300.00591 * 1 2 3 31 31 H 1.09005 * 109.47131 * 60.00374 * 1 2 3 32 32 H 1.09001 * 109.47467 * 180.02562 * 1 2 3 33 33 H 1.08006 * 119.99588 * 359.97438 * 4 3 2 34 34 H 1.07994 * 120.00073 * 179.97438 * 5 4 3 35 35 H 1.08994 * 109.47407 * 184.42284 * 10 8 7 36 36 H 1.09005 * 109.47487 * 304.42949 * 10 8 7 37 37 H 1.09006 * 109.47073 * 64.42282 * 10 8 7 38 38 H 1.08996 * 110.36407 * 323.00028 * 14 13 11 39 39 H 1.09005 * 110.36385 * 85.21265 * 14 13 11 40 40 H 1.08997 * 111.00342 * 204.91694 * 15 14 13 41 41 H 1.08992 * 111.00257 * 81.06354 * 15 14 13 42 42 H 0.97001 * 119.99971 * 271.47400 * 18 16 15 43 43 H 0.96998 * 120.00114 * 179.97438 * 22 21 19 44 44 H 1.08997 * 109.87834 * 59.49146 * 27 13 11 45 45 H 1.09003 * 110.00659 * 298.39481 * 27 13 11 46 46 H 1.07996 * 120.00047 * 179.73201 * 28 6 5 47 47 H 1.07999 * 119.99702 * 180.22841 * 29 28 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0463 1.2116 0.0000 4 6 3.4314 1.2842 0.0005 5 6 4.0586 2.5149 0.0000 6 6 3.3031 3.6781 -0.0016 7 8 3.9205 4.8897 -0.0016 8 6 5.3452 4.8919 -0.1133 9 1 5.6617 4.0580 -0.7398 10 6 5.9661 4.7493 1.2777 11 6 5.7982 6.1877 -0.7352 12 8 5.0318 7.1245 -0.8111 13 7 7.0552 6.3055 -1.2070 14 6 7.5947 7.4692 -1.9337 15 6 8.7734 6.9055 -2.7659 16 6 9.3667 5.8530 -1.7925 17 1 10.0393 6.3231 -1.0750 18 7 10.0588 4.7948 -2.5324 19 6 11.3979 4.9068 -2.7956 20 1 11.9438 5.7754 -2.4582 21 6 12.0536 3.9043 -3.4971 22 7 11.3882 2.8460 -3.9088 23 14 13.8802 4.0574 -3.8569 24 1 14.3909 5.3320 -3.2915 25 1 14.6035 2.9166 -3.2400 26 1 14.0980 4.0456 -5.3258 27 6 8.1153 5.2943 -1.0829 28 6 1.9181 3.6056 0.0031 29 6 1.2910 2.3748 -0.0004 30 1 -0.3634 0.5139 0.8899 31 1 -0.3634 0.5138 -0.8901 32 1 -0.3634 -1.0277 0.0005 33 1 4.0196 0.3784 0.0014 34 1 5.1370 2.5714 0.0008 35 1 7.0504 4.8297 1.2015 36 1 5.5879 5.5388 1.9271 37 1 5.7022 3.7777 1.6955 38 1 6.8346 7.8920 -2.5905 39 1 7.9504 8.2234 -1.2315 40 1 9.5017 7.6850 -2.9896 41 1 8.4152 6.4335 -3.6807 42 1 9.5684 4.0147 -2.8356 43 1 11.8462 2.1456 -4.3993 44 1 7.8008 4.3669 -1.5615 45 1 8.3359 5.1123 -0.0310 46 1 1.3299 4.5113 0.0062 47 1 0.2125 2.3183 -0.0005 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001019214847.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:05:59 Heat of formation + Delta-G solvation = -76.402207 kcal Electronic energy + Delta-G solvation = -28459.273279 eV Core-core repulsion = 24414.932407 eV Total energy + Delta-G solvation = -4044.340871 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.86314 -41.03590 -39.95834 -38.67526 -37.29012 -35.89245 -33.80844 -32.95303 -32.06303 -30.84616 -30.19685 -29.22241 -27.98290 -26.21975 -25.43075 -24.18936 -23.68081 -22.52879 -21.66540 -20.48085 -19.63388 -19.37880 -18.71332 -18.19353 -17.42872 -17.32275 -16.72985 -16.68045 -16.50558 -16.10668 -15.81469 -15.48485 -15.28692 -15.13558 -14.79399 -14.46953 -14.38057 -14.18697 -13.88229 -13.72961 -13.56541 -13.43781 -13.26462 -13.11337 -12.98028 -12.94326 -12.70053 -12.63289 -12.39078 -12.25155 -12.05901 -11.75890 -11.70161 -11.65443 -11.46198 -10.93943 -10.89995 -10.11881 -9.77582 -9.01650 -8.77137 -7.92943 -5.21900 0.21750 0.40961 1.30648 1.46816 1.51243 1.53078 1.61457 2.34308 2.47624 2.59579 2.69263 3.19622 3.39815 3.62978 3.73735 3.78446 3.81090 3.85634 3.86753 3.98823 4.04750 4.26973 4.29628 4.35627 4.39880 4.43170 4.46786 4.57989 4.59424 4.64439 4.66757 4.75156 4.81609 4.90796 4.97004 4.99393 5.06886 5.12626 5.24712 5.26980 5.29682 5.42070 5.53661 5.57814 6.19864 6.27745 6.35392 6.49109 6.93220 7.36251 8.07491 8.30484 9.30190 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.012947 B = 0.002498 C = 0.002169 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2162.066547 B =11207.786396 C =12904.005955 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.335 6.335 3 C 0.082 3.918 4 C -0.120 4.120 5 C -0.171 4.171 6 C 0.075 3.925 7 O -0.308 6.308 8 C 0.073 3.927 9 H 0.109 0.891 10 C -0.170 4.170 11 C 0.531 3.469 12 O -0.568 6.568 13 N -0.606 5.606 14 C 0.112 3.888 15 C -0.145 4.145 16 C 0.166 3.834 17 H 0.078 0.922 18 N -0.726 5.726 19 C -0.236 4.236 20 H 0.082 0.918 21 C -0.072 4.072 22 N -0.967 5.967 23 Si 0.967 3.033 24 H -0.264 1.264 25 H -0.296 1.296 26 H -0.299 1.299 27 C 0.093 3.907 28 C -0.120 4.120 29 C -0.164 4.164 30 H 0.066 0.934 31 H 0.063 0.937 32 H 0.117 0.883 33 H 0.145 0.855 34 H 0.149 0.851 35 H 0.094 0.906 36 H 0.069 0.931 37 H 0.092 0.908 38 H 0.068 0.932 39 H 0.084 0.916 40 H 0.086 0.914 41 H 0.056 0.944 42 H 0.375 0.625 43 H 0.250 0.750 44 H 0.071 0.929 45 H 0.097 0.903 46 H 0.141 0.859 47 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.309 -1.426 11.267 22.401 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.250 6.250 3 C 0.037 3.963 4 C -0.139 4.139 5 C -0.190 4.190 6 C 0.030 3.970 7 O -0.222 6.222 8 C 0.013 3.987 9 H 0.126 0.874 10 C -0.227 4.227 11 C 0.319 3.681 12 O -0.447 6.447 13 N -0.341 5.341 14 C -0.010 4.010 15 C -0.186 4.186 16 C 0.056 3.944 17 H 0.096 0.904 18 N -0.366 5.366 19 C -0.367 4.367 20 H 0.100 0.900 21 C -0.265 4.265 22 N -0.618 5.618 23 Si 0.797 3.203 24 H -0.188 1.188 25 H -0.223 1.223 26 H -0.227 1.227 27 C -0.031 4.031 28 C -0.138 4.138 29 C -0.182 4.182 30 H 0.084 0.916 31 H 0.082 0.918 32 H 0.135 0.865 33 H 0.163 0.837 34 H 0.167 0.833 35 H 0.113 0.887 36 H 0.088 0.912 37 H 0.110 0.890 38 H 0.086 0.914 39 H 0.102 0.898 40 H 0.105 0.895 41 H 0.075 0.925 42 H 0.208 0.792 43 H 0.059 0.941 44 H 0.089 0.911 45 H 0.115 0.885 46 H 0.158 0.842 47 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -19.607 -0.870 11.286 22.640 hybrid contribution 0.777 -0.316 -0.801 1.160 sum -18.830 -1.187 10.486 21.585 Atomic orbital electron populations 1.23339 0.76585 1.05548 1.02250 1.86064 1.23336 1.26411 1.89166 1.19092 0.92519 0.84874 0.99855 1.20453 0.91962 0.98388 1.03056 1.21289 1.01042 0.91132 1.05494 1.19188 0.92929 0.84036 1.00829 1.86162 1.19998 1.27490 1.88579 1.22207 0.80399 0.95950 1.00144 0.87382 1.22338 1.02474 1.04771 0.93159 1.20153 0.80476 0.89411 0.78020 1.90685 1.53946 1.41792 1.58240 1.48383 1.09961 1.20059 1.55653 1.22295 0.95602 0.88161 0.94909 1.23403 0.96543 1.00091 0.98567 1.21378 0.91366 0.89082 0.92577 0.90372 1.42499 1.06828 1.21841 1.65407 1.19636 0.86165 1.03150 1.27779 0.90010 1.25491 1.01917 0.97061 1.02006 1.69800 1.36543 1.10769 1.44650 0.85158 0.80817 0.77508 0.76773 1.18840 1.22330 1.22677 1.22534 0.87072 0.91217 1.02242 1.20436 0.91162 0.98976 1.03249 1.21281 1.01323 0.90447 1.05161 0.91554 0.91843 0.86461 0.83721 0.83328 0.88715 0.91181 0.88963 0.91385 0.89766 0.89515 0.92545 0.79209 0.94111 0.91092 0.88457 0.84155 0.82230 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.17 9.81 113.37 1.11 1.28 16 2 O -0.34 -6.28 10.50 -93.37 -0.98 -7.26 16 3 C 0.08 1.66 6.69 22.49 0.15 1.82 16 4 C -0.12 -2.52 9.98 22.35 0.22 -2.30 16 5 C -0.17 -3.72 8.36 22.35 0.19 -3.54 16 6 C 0.07 1.85 6.62 22.49 0.15 2.00 16 7 O -0.31 -8.81 9.37 -74.77 -0.70 -9.51 16 8 C 0.07 1.82 2.02 29.85 0.06 1.88 16 9 H 0.11 2.45 5.79 -2.39 -0.01 2.44 16 10 C -0.17 -3.29 9.17 71.98 0.66 -2.63 16 11 C 0.53 16.46 7.15 87.66 0.63 17.08 16 12 O -0.57 -21.93 16.86 15.60 0.26 -21.66 16 13 N -0.61 -17.22 3.33 -811.76 -2.70 -19.93 16 14 C 0.11 3.11 6.89 86.86 0.60 3.71 16 15 C -0.15 -4.46 6.77 31.98 0.22 -4.24 16 16 C 0.17 5.51 3.61 46.18 0.17 5.68 16 17 H 0.08 2.51 8.09 -2.39 -0.02 2.49 16 18 N -0.73 -32.30 5.22 -317.34 -1.66 -33.96 16 19 C -0.24 -11.84 9.96 84.03 0.84 -11.01 16 20 H 0.08 3.91 7.83 -2.91 -0.02 3.89 16 21 C -0.07 -3.88 5.50 84.86 0.47 -3.41 16 22 N -0.97 -55.91 13.06 21.65 0.28 -55.62 16 23 Si 0.97 43.65 29.55 68.60 2.03 45.68 16 24 H -0.26 -11.09 7.11 99.48 0.71 -10.38 16 25 H -0.30 -13.48 7.11 99.48 0.71 -12.77 16 26 H -0.30 -13.77 7.11 99.48 0.71 -13.06 16 27 C 0.09 2.53 5.83 86.73 0.51 3.03 16 28 C -0.12 -2.60 9.98 22.35 0.22 -2.38 16 29 C -0.16 -2.98 9.03 22.35 0.20 -2.78 16 30 H 0.07 0.50 7.66 -2.39 -0.02 0.48 16 31 H 0.06 0.52 7.66 -2.38 -0.02 0.51 16 32 H 0.12 0.70 8.14 -2.39 -0.02 0.68 16 33 H 0.15 2.65 8.06 -2.91 -0.02 2.62 16 34 H 0.15 2.78 5.44 -2.91 -0.02 2.76 16 35 H 0.09 1.60 5.73 -2.39 -0.01 1.59 16 36 H 0.07 1.44 8.14 -2.38 -0.02 1.42 16 37 H 0.09 1.49 7.07 -2.38 -0.02 1.47 16 38 H 0.07 1.96 8.09 -2.39 -0.02 1.94 16 39 H 0.08 2.06 8.14 -2.38 -0.02 2.04 16 40 H 0.09 2.52 8.14 -2.39 -0.02 2.50 16 41 H 0.06 1.96 8.14 -2.39 -0.02 1.94 16 42 H 0.38 18.15 7.56 -92.71 -0.70 17.45 16 43 H 0.25 14.16 8.31 -92.71 -0.77 13.39 16 44 H 0.07 2.00 7.46 -2.39 -0.02 1.99 16 45 H 0.10 2.19 6.18 -2.39 -0.01 2.18 16 46 H 0.14 2.77 8.06 -2.91 -0.02 2.74 16 47 H 0.16 1.92 6.29 -2.91 -0.02 1.90 16 Total: -1.00 -69.08 382.57 3.21 -65.86 By element: Atomic # 1 Polarization: 31.90 SS G_CDS: 0.30 Total: 32.20 kcal Atomic # 6 Polarization: -2.18 SS G_CDS: 6.38 Total: 4.20 kcal Atomic # 7 Polarization: -105.43 SS G_CDS: -4.08 Total: -109.50 kcal Atomic # 8 Polarization: -37.02 SS G_CDS: -1.42 Total: -38.44 kcal Atomic # 14 Polarization: 43.65 SS G_CDS: 2.03 Total: 45.68 kcal Total: -69.08 3.21 -65.86 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001019214847.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.539 kcal (2) G-P(sol) polarization free energy of solvation -69.078 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.617 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.215 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.863 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.402 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds