Wall clock time and date at job start Tue Mar 31 2020 18:06:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35987 * 116.99970 * 2 1 4 4 C 1.38699 * 119.99639 * 180.02562 * 3 2 1 5 5 C 1.38134 * 119.99801 * 179.97438 * 4 3 2 6 6 C 1.38696 * 120.00021 * 359.97438 * 5 4 3 7 7 O 1.35982 * 119.99826 * 180.02562 * 6 5 4 8 8 C 1.42897 * 117.00187 * 354.51474 * 7 6 5 9 9 H 1.09003 * 109.47143 * 324.85848 * 8 7 6 10 10 C 1.53002 * 109.47337 * 84.85953 * 8 7 6 11 11 C 1.50702 * 109.47017 * 204.86238 * 8 7 6 12 12 O 1.21281 * 120.00083 * 359.97438 * 11 8 7 13 13 N 1.34776 * 120.00222 * 179.97438 * 11 8 7 14 14 C 1.47430 * 125.64443 * 0.04152 * 13 11 8 15 15 C 1.54914 * 104.82867 * 204.09435 * 14 13 11 16 16 C 1.55157 * 101.58004 * 322.98806 * 15 14 13 17 17 H 1.09001 * 110.86912 * 277.06638 * 16 15 14 18 18 N 1.46498 * 110.71735 * 153.86784 * 16 15 14 19 19 C 1.36936 * 119.99997 * 91.75342 * 18 16 15 20 20 H 1.08000 * 120.00370 * 359.72540 * 19 18 16 21 21 C 1.38814 * 120.00092 * 179.72155 * 19 18 16 22 22 N 1.31615 * 120.00152 * 0.02562 * 21 19 18 23 23 Si 1.86803 * 119.99987 * 180.02562 * 21 19 18 24 24 H 1.48498 * 109.47243 * 60.00348 * 23 21 19 25 25 H 1.48497 * 109.47168 * 180.02562 * 23 21 19 26 26 H 1.48503 * 109.46889 * 300.00140 * 23 21 19 27 27 C 1.47019 * 125.65238 * 179.97438 * 13 11 8 28 28 C 1.38697 * 120.00090 * 0.27314 * 6 5 4 29 29 C 1.38140 * 119.99812 * 359.53955 * 28 6 5 30 30 H 1.09002 * 109.46556 * 300.00201 * 1 2 3 31 31 H 1.09000 * 109.46996 * 59.99714 * 1 2 3 32 32 H 1.08994 * 109.47508 * 180.02562 * 1 2 3 33 33 H 1.08004 * 120.00331 * 359.97438 * 4 3 2 34 34 H 1.08000 * 119.99938 * 179.97438 * 5 4 3 35 35 H 1.08999 * 109.46608 * 59.99824 * 10 8 7 36 36 H 1.08995 * 109.47189 * 179.97438 * 10 8 7 37 37 H 1.09000 * 109.46749 * 300.00393 * 10 8 7 38 38 H 1.09008 * 110.36477 * 322.92556 * 14 13 11 39 39 H 1.08992 * 110.36802 * 85.14498 * 14 13 11 40 40 H 1.09003 * 110.99837 * 204.91571 * 15 14 13 41 41 H 1.08997 * 111.00269 * 81.06621 * 15 14 13 42 42 H 0.97002 * 120.00256 * 271.47258 * 18 16 15 43 43 H 0.96996 * 120.00186 * 179.97438 * 22 21 19 44 44 H 1.09000 * 109.88018 * 59.56128 * 27 13 11 45 45 H 1.08998 * 110.01242 * 298.46775 * 27 13 11 46 46 H 1.07996 * 120.00433 * 179.72543 * 28 6 5 47 47 H 1.07998 * 120.00027 * 180.22826 * 29 28 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2117 0.0000 4 6 3.4314 1.2842 -0.0005 5 6 4.0586 2.5149 -0.0011 6 6 3.3032 3.6782 -0.0016 7 8 3.9206 4.8897 -0.0027 8 6 5.3444 4.8924 0.1185 9 1 5.6547 4.0796 0.7752 10 6 5.9743 4.7009 -1.2626 11 6 5.7967 6.2076 0.6989 12 8 4.9801 7.0590 0.9806 13 7 7.1085 6.4378 0.9051 14 6 8.2031 5.4956 0.6086 15 6 9.3594 5.9234 1.5466 16 6 9.2133 7.4680 1.5367 17 1 9.7026 7.8987 0.6631 18 7 9.7530 8.0476 2.7692 19 6 11.0612 8.4490 2.8213 20 1 11.6962 8.3344 1.9553 21 6 11.5711 9.0035 3.9873 22 7 10.7974 9.1429 5.0428 23 14 13.3555 9.5518 4.0581 24 1 13.5935 10.5967 3.0302 25 1 13.6502 10.1050 5.4043 26 1 14.2413 8.3890 3.7965 27 6 7.6852 7.6704 1.4614 28 6 1.9182 3.6056 0.0041 29 6 1.2910 2.3748 0.0007 30 1 -0.3632 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3634 -1.0276 0.0005 33 1 4.0197 0.3784 -0.0005 34 1 5.1371 2.5714 -0.0011 35 1 5.6639 5.5137 -1.9192 36 1 7.0603 4.7034 -1.1702 37 1 5.6471 3.7497 -1.6823 38 1 7.8941 4.4737 0.8290 39 1 8.5066 5.5828 -0.4345 40 1 10.3243 5.6196 1.1408 41 1 9.2162 5.5238 2.5505 42 1 9.1827 8.1507 3.5470 43 1 11.1538 9.5300 5.8577 44 1 7.2855 7.8490 2.4596 45 1 7.4546 8.5158 0.8132 46 1 1.3300 4.5114 0.0082 47 1 0.2125 2.3183 0.0015 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001019214851.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:06:03 Heat of formation + Delta-G solvation = -54.570640 kcal Electronic energy + Delta-G solvation = -28183.291748 eV Core-core repulsion = 24139.897564 eV Total energy + Delta-G solvation = -4043.394184 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.95764 -40.08704 -39.04977 -37.35812 -36.45896 -34.30026 -32.64572 -31.53316 -30.96984 -29.62116 -29.54541 -27.74553 -27.44155 -25.12449 -23.67713 -23.20267 -22.71773 -21.80146 -20.19976 -19.37832 -18.87178 -17.98727 -17.47328 -17.09438 -16.37036 -16.11838 -15.97306 -15.73335 -15.41746 -15.08176 -14.61754 -14.39230 -13.92218 -13.77524 -13.60099 -13.53510 -13.39690 -13.19858 -12.90129 -12.73189 -12.60397 -12.52349 -12.23211 -12.00660 -11.95594 -11.61706 -11.56782 -11.24037 -10.96814 -10.85764 -10.75666 -10.73055 -10.39210 -10.16031 -9.81007 -9.65580 -9.39709 -9.01127 -8.51100 -8.00928 -7.09599 -5.85675 -3.16927 0.93141 1.17599 2.43878 2.61774 2.95949 3.38915 3.41776 3.43397 3.44884 3.45656 4.25969 4.43550 4.47792 4.51005 4.55337 4.66832 4.68068 4.77028 4.83489 4.90847 4.97921 5.07991 5.12741 5.20119 5.28724 5.31216 5.36848 5.45304 5.50552 5.61032 5.67287 5.70522 5.80579 5.88230 5.98898 6.03155 6.07880 6.18515 6.23918 6.29391 6.47175 6.53904 6.82738 6.95887 7.20499 7.57691 7.60959 8.18759 8.31361 9.42837 9.96508 10.31000 11.36253 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.028783 B = 0.001906 C = 0.001888 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 972.573326 B =14684.142265 C =14826.937304 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.320 6.320 3 C 0.086 3.914 4 C -0.109 4.109 5 C -0.172 4.172 6 C 0.100 3.900 7 O -0.284 6.284 8 C 0.073 3.927 9 H 0.097 0.903 10 C -0.183 4.183 11 C 0.530 3.470 12 O -0.522 6.522 13 N -0.608 5.608 14 C 0.093 3.907 15 C -0.155 4.155 16 C 0.172 3.828 17 H 0.068 0.932 18 N -0.714 5.714 19 C -0.248 4.248 20 H 0.073 0.927 21 C -0.009 4.009 22 N -0.929 5.929 23 Si 0.910 3.090 24 H -0.285 1.285 25 H -0.291 1.291 26 H -0.285 1.285 27 C 0.101 3.899 28 C -0.109 4.109 29 C -0.167 4.167 30 H 0.055 0.945 31 H 0.054 0.946 32 H 0.098 0.902 33 H 0.134 0.866 34 H 0.138 0.862 35 H 0.074 0.926 36 H 0.087 0.913 37 H 0.074 0.926 38 H 0.068 0.932 39 H 0.071 0.929 40 H 0.078 0.922 41 H 0.076 0.924 42 H 0.386 0.614 43 H 0.258 0.742 44 H 0.072 0.928 45 H 0.068 0.932 46 H 0.136 0.864 47 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.971 -18.606 -13.835 28.734 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.234 6.234 3 C 0.042 3.958 4 C -0.128 4.128 5 C -0.191 4.191 6 C 0.054 3.946 7 O -0.197 6.197 8 C 0.013 3.987 9 H 0.115 0.885 10 C -0.241 4.241 11 C 0.316 3.684 12 O -0.397 6.397 13 N -0.344 5.344 14 C -0.030 4.030 15 C -0.197 4.197 16 C 0.060 3.940 17 H 0.086 0.914 18 N -0.355 5.355 19 C -0.379 4.379 20 H 0.091 0.909 21 C -0.206 4.206 22 N -0.576 5.576 23 Si 0.740 3.260 24 H -0.211 1.211 25 H -0.216 1.216 26 H -0.212 1.212 27 C -0.022 4.022 28 C -0.128 4.128 29 C -0.185 4.185 30 H 0.073 0.927 31 H 0.073 0.927 32 H 0.117 0.883 33 H 0.152 0.848 34 H 0.155 0.845 35 H 0.093 0.907 36 H 0.105 0.895 37 H 0.093 0.907 38 H 0.087 0.913 39 H 0.089 0.911 40 H 0.097 0.903 41 H 0.095 0.905 42 H 0.221 0.779 43 H 0.068 0.932 44 H 0.090 0.910 45 H 0.086 0.914 46 H 0.154 0.846 47 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -17.316 -18.060 -13.697 28.524 hybrid contribution 0.723 0.245 0.407 0.866 sum -16.593 -17.814 -13.290 27.736 Atomic orbital electron populations 1.23038 0.78538 1.03878 1.01324 1.86071 1.21218 1.26713 1.89355 1.18899 0.92287 0.84239 1.00419 1.20201 0.91383 0.97990 1.03227 1.21152 1.00349 0.91407 1.06161 1.18957 0.92328 0.84255 0.99021 1.86217 1.19485 1.26209 1.87824 1.22110 0.80490 0.97378 0.98768 0.88506 1.22486 1.02383 1.03913 0.95275 1.19604 0.81359 0.88253 0.79171 1.90742 1.51798 1.46324 1.50859 1.48328 1.04567 1.18542 1.62922 1.22575 0.87925 0.92712 0.99792 1.23597 0.96335 1.00553 0.99190 1.21184 0.89452 0.91264 0.92063 0.91367 1.42362 1.10554 1.72927 1.09623 1.19176 0.87002 1.34063 0.97692 0.90948 1.24786 0.98258 1.01427 0.96090 1.69652 1.35247 1.49904 1.02829 0.86237 0.84486 0.78468 0.76760 1.21139 1.21650 1.21170 1.22401 0.95230 0.85372 0.99199 1.20246 0.91431 0.98162 1.02969 1.21053 1.00077 0.91344 1.06074 0.92674 0.92711 0.88315 0.84806 0.84486 0.90664 0.89465 0.90727 0.91335 0.91085 0.90325 0.90522 0.77899 0.93246 0.90956 0.91413 0.84629 0.84800 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.14 9.81 101.05 0.99 1.13 16 2 O -0.32 -2.88 10.50 -19.70 -0.21 -3.08 16 3 C 0.09 0.83 6.69 -39.24 -0.26 0.57 16 4 C -0.11 -1.02 9.98 -39.45 -0.39 -1.42 16 5 C -0.17 -1.67 8.23 -39.45 -0.32 -1.99 16 6 C 0.10 1.16 6.60 -39.24 -0.26 0.90 16 7 O -0.28 -3.91 9.33 -39.59 -0.37 -4.28 16 8 C 0.07 0.86 1.99 -27.88 -0.06 0.81 16 9 H 0.10 0.97 6.02 -51.93 -0.31 0.66 16 10 C -0.18 -1.65 8.98 37.16 0.33 -1.31 16 11 C 0.53 8.39 7.29 -10.98 -0.08 8.31 16 12 O -0.52 -10.55 16.83 -14.35 -0.24 -10.79 16 13 N -0.61 -9.02 3.32 -170.52 -0.57 -9.58 16 14 C 0.09 1.08 5.14 -2.52 -0.01 1.07 16 15 C -0.16 -2.33 6.77 -24.58 -0.17 -2.50 16 16 C 0.17 3.15 3.61 -66.10 -0.24 2.91 16 17 H 0.07 1.23 8.09 -51.93 -0.42 0.81 16 18 N -0.71 -16.98 5.22 -51.65 -0.27 -17.25 16 19 C -0.25 -6.55 9.96 -15.06 -0.15 -6.70 16 20 H 0.07 1.82 7.83 -52.49 -0.41 1.41 16 21 C -0.01 -0.25 5.50 -17.43 -0.10 -0.34 16 22 N -0.93 -27.37 13.06 55.49 0.72 -26.65 16 23 Si 0.91 21.65 29.55 -169.99 -5.02 16.62 16 24 H -0.28 -6.68 7.11 56.52 0.40 -6.27 16 25 H -0.29 -7.03 7.11 56.52 0.40 -6.62 16 26 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 27 C 0.10 1.75 6.62 -3.07 -0.02 1.73 16 28 C -0.11 -1.15 9.98 -39.45 -0.39 -1.55 16 29 C -0.17 -1.50 9.03 -39.45 -0.36 -1.86 16 30 H 0.05 0.25 7.66 -51.93 -0.40 -0.15 16 31 H 0.05 0.23 7.66 -51.93 -0.40 -0.17 16 32 H 0.10 0.32 8.14 -51.93 -0.42 -0.10 16 33 H 0.13 1.03 8.06 -52.48 -0.42 0.60 16 34 H 0.14 1.06 5.41 -52.49 -0.28 0.78 16 35 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 36 H 0.09 0.66 4.99 -51.93 -0.26 0.40 16 37 H 0.07 0.56 6.90 -51.93 -0.36 0.20 16 38 H 0.07 0.63 7.36 -51.92 -0.38 0.25 16 39 H 0.07 0.68 7.07 -51.93 -0.37 0.32 16 40 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 41 H 0.08 1.28 8.14 -51.93 -0.42 0.86 16 42 H 0.39 9.96 7.56 -40.82 -0.31 9.65 16 43 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 44 H 0.07 1.40 7.72 -51.93 -0.40 1.00 16 45 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 46 H 0.14 1.31 8.06 -52.49 -0.42 0.89 16 47 H 0.13 0.87 6.29 -52.49 -0.33 0.54 16 LS Contribution 381.02 15.07 5.74 5.74 Total: -1.00 -33.48 381.02 -8.42 -41.91 By element: Atomic # 1 Polarization: 14.34 SS G_CDS: -6.72 Total: 7.61 kcal Atomic # 6 Polarization: 1.24 SS G_CDS: -1.48 Total: -0.24 kcal Atomic # 7 Polarization: -53.37 SS G_CDS: -0.11 Total: -53.48 kcal Atomic # 8 Polarization: -17.34 SS G_CDS: -0.82 Total: -18.16 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -5.02 Total: 16.62 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -33.48 -8.42 -41.91 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001019214851.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.666 kcal (2) G-P(sol) polarization free energy of solvation -33.485 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.150 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.420 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.905 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.571 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds