Wall clock time and date at job start Tue Mar 31 2020 18:06:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35987 * 116.99970 * 2 1 4 4 C 1.38699 * 119.99639 * 180.02562 * 3 2 1 5 5 C 1.38134 * 119.99801 * 179.97438 * 4 3 2 6 6 C 1.38696 * 120.00021 * 359.97438 * 5 4 3 7 7 O 1.35982 * 119.99826 * 180.02562 * 6 5 4 8 8 C 1.42897 * 117.00187 * 354.51474 * 7 6 5 9 9 H 1.09003 * 109.47143 * 324.85848 * 8 7 6 10 10 C 1.53002 * 109.47337 * 84.85953 * 8 7 6 11 11 C 1.50702 * 109.47017 * 204.86238 * 8 7 6 12 12 O 1.21281 * 120.00083 * 359.97438 * 11 8 7 13 13 N 1.34776 * 120.00222 * 179.97438 * 11 8 7 14 14 C 1.47430 * 125.64443 * 0.04152 * 13 11 8 15 15 C 1.54914 * 104.82867 * 204.09435 * 14 13 11 16 16 C 1.55157 * 101.58004 * 322.98806 * 15 14 13 17 17 H 1.09001 * 110.86912 * 277.06638 * 16 15 14 18 18 N 1.46498 * 110.71735 * 153.86784 * 16 15 14 19 19 C 1.36936 * 119.99997 * 91.75342 * 18 16 15 20 20 H 1.08000 * 120.00370 * 359.72540 * 19 18 16 21 21 C 1.38814 * 120.00092 * 179.72155 * 19 18 16 22 22 N 1.31615 * 120.00152 * 0.02562 * 21 19 18 23 23 Si 1.86803 * 119.99987 * 180.02562 * 21 19 18 24 24 H 1.48498 * 109.47243 * 60.00348 * 23 21 19 25 25 H 1.48497 * 109.47168 * 180.02562 * 23 21 19 26 26 H 1.48503 * 109.46889 * 300.00140 * 23 21 19 27 27 C 1.47019 * 125.65238 * 179.97438 * 13 11 8 28 28 C 1.38697 * 120.00090 * 0.27314 * 6 5 4 29 29 C 1.38140 * 119.99812 * 359.53955 * 28 6 5 30 30 H 1.09002 * 109.46556 * 300.00201 * 1 2 3 31 31 H 1.09000 * 109.46996 * 59.99714 * 1 2 3 32 32 H 1.08994 * 109.47508 * 180.02562 * 1 2 3 33 33 H 1.08004 * 120.00331 * 359.97438 * 4 3 2 34 34 H 1.08000 * 119.99938 * 179.97438 * 5 4 3 35 35 H 1.08999 * 109.46608 * 59.99824 * 10 8 7 36 36 H 1.08995 * 109.47189 * 179.97438 * 10 8 7 37 37 H 1.09000 * 109.46749 * 300.00393 * 10 8 7 38 38 H 1.09008 * 110.36477 * 322.92556 * 14 13 11 39 39 H 1.08992 * 110.36802 * 85.14498 * 14 13 11 40 40 H 1.09003 * 110.99837 * 204.91571 * 15 14 13 41 41 H 1.08997 * 111.00269 * 81.06621 * 15 14 13 42 42 H 0.97002 * 120.00256 * 271.47258 * 18 16 15 43 43 H 0.96996 * 120.00186 * 179.97438 * 22 21 19 44 44 H 1.09000 * 109.88018 * 59.56128 * 27 13 11 45 45 H 1.08998 * 110.01242 * 298.46775 * 27 13 11 46 46 H 1.07996 * 120.00433 * 179.72543 * 28 6 5 47 47 H 1.07998 * 120.00027 * 180.22826 * 29 28 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2117 0.0000 4 6 3.4314 1.2842 -0.0005 5 6 4.0586 2.5149 -0.0011 6 6 3.3032 3.6782 -0.0016 7 8 3.9206 4.8897 -0.0027 8 6 5.3444 4.8924 0.1185 9 1 5.6547 4.0796 0.7752 10 6 5.9743 4.7009 -1.2626 11 6 5.7967 6.2076 0.6989 12 8 4.9801 7.0590 0.9806 13 7 7.1085 6.4378 0.9051 14 6 8.2031 5.4956 0.6086 15 6 9.3594 5.9234 1.5466 16 6 9.2133 7.4680 1.5367 17 1 9.7026 7.8987 0.6631 18 7 9.7530 8.0476 2.7692 19 6 11.0612 8.4490 2.8213 20 1 11.6962 8.3344 1.9553 21 6 11.5711 9.0035 3.9873 22 7 10.7974 9.1429 5.0428 23 14 13.3555 9.5518 4.0581 24 1 13.5935 10.5967 3.0302 25 1 13.6502 10.1050 5.4043 26 1 14.2413 8.3890 3.7965 27 6 7.6852 7.6704 1.4614 28 6 1.9182 3.6056 0.0041 29 6 1.2910 2.3748 0.0007 30 1 -0.3632 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3634 -1.0276 0.0005 33 1 4.0197 0.3784 -0.0005 34 1 5.1371 2.5714 -0.0011 35 1 5.6639 5.5137 -1.9192 36 1 7.0603 4.7034 -1.1702 37 1 5.6471 3.7497 -1.6823 38 1 7.8941 4.4737 0.8290 39 1 8.5066 5.5828 -0.4345 40 1 10.3243 5.6196 1.1408 41 1 9.2162 5.5238 2.5505 42 1 9.1827 8.1507 3.5470 43 1 11.1538 9.5300 5.8577 44 1 7.2855 7.8490 2.4596 45 1 7.4546 8.5158 0.8132 46 1 1.3300 4.5114 0.0082 47 1 0.2125 2.3183 0.0015 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001019214851.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:06:02 Heat of formation + Delta-G solvation = -76.353092 kcal Electronic energy + Delta-G solvation = -28184.236306 eV Core-core repulsion = 24139.897564 eV Total energy + Delta-G solvation = -4044.338742 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.86218 -41.02953 -39.94856 -38.65096 -37.27351 -36.00318 -33.87427 -32.79369 -31.92994 -30.99429 -30.22576 -29.19125 -27.97359 -26.28931 -25.28757 -24.09461 -23.71352 -22.64028 -21.62648 -20.50526 -19.63238 -19.34517 -18.72033 -18.16235 -17.40726 -17.22012 -16.78239 -16.62968 -16.50500 -16.20931 -15.77882 -15.44295 -15.30025 -15.12891 -14.74282 -14.52163 -14.29461 -14.21481 -13.92251 -13.70270 -13.49314 -13.43830 -13.30770 -13.02977 -12.98127 -12.92640 -12.67238 -12.52097 -12.37566 -12.27810 -12.13105 -11.74418 -11.69037 -11.62886 -11.45100 -10.92611 -10.88984 -10.09861 -9.77516 -9.04339 -8.75476 -7.94035 -5.24577 0.23597 0.42690 1.38031 1.43146 1.50808 1.53225 1.59166 2.36256 2.49722 2.59058 2.71212 3.24038 3.39643 3.63785 3.73359 3.80300 3.81314 3.85933 3.90540 4.01542 4.06221 4.27454 4.31284 4.35900 4.41432 4.42858 4.48990 4.57806 4.61775 4.65195 4.70169 4.76020 4.83675 4.93653 4.98740 4.99256 5.13890 5.15290 5.26588 5.28489 5.31139 5.45076 5.54684 5.55412 6.23006 6.26259 6.40483 6.51072 6.96920 7.32492 8.04589 8.27706 9.29239 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.028783 B = 0.001906 C = 0.001888 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 972.573326 B =14684.142265 C =14826.937304 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.334 6.334 3 C 0.080 3.920 4 C -0.116 4.116 5 C -0.167 4.167 6 C 0.075 3.925 7 O -0.314 6.314 8 C 0.078 3.922 9 H 0.122 0.878 10 C -0.176 4.176 11 C 0.523 3.477 12 O -0.579 6.579 13 N -0.605 5.605 14 C 0.097 3.903 15 C -0.146 4.146 16 C 0.166 3.834 17 H 0.077 0.923 18 N -0.731 5.731 19 C -0.240 4.240 20 H 0.086 0.914 21 C -0.077 4.077 22 N -0.972 5.972 23 Si 0.975 3.025 24 H -0.278 1.278 25 H -0.301 1.301 26 H -0.274 1.274 27 C 0.108 3.892 28 C -0.125 4.125 29 C -0.166 4.166 30 H 0.061 0.939 31 H 0.064 0.936 32 H 0.118 0.882 33 H 0.152 0.848 34 H 0.159 0.841 35 H 0.061 0.939 36 H 0.108 0.892 37 H 0.095 0.905 38 H 0.106 0.894 39 H 0.106 0.894 40 H 0.095 0.905 41 H 0.057 0.943 42 H 0.371 0.629 43 H 0.250 0.750 44 H 0.042 0.958 45 H 0.062 0.938 46 H 0.133 0.867 47 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.281 -21.508 -16.074 31.401 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.248 6.248 3 C 0.035 3.965 4 C -0.135 4.135 5 C -0.186 4.186 6 C 0.030 3.970 7 O -0.228 6.228 8 C 0.019 3.981 9 H 0.139 0.861 10 C -0.233 4.233 11 C 0.312 3.688 12 O -0.458 6.458 13 N -0.339 5.339 14 C -0.025 4.025 15 C -0.186 4.186 16 C 0.056 3.944 17 H 0.095 0.905 18 N -0.371 5.371 19 C -0.372 4.372 20 H 0.104 0.896 21 C -0.269 4.269 22 N -0.622 5.622 23 Si 0.804 3.196 24 H -0.204 1.204 25 H -0.228 1.228 26 H -0.199 1.199 27 C -0.016 4.016 28 C -0.144 4.144 29 C -0.184 4.184 30 H 0.080 0.920 31 H 0.083 0.917 32 H 0.136 0.864 33 H 0.169 0.831 34 H 0.177 0.823 35 H 0.081 0.919 36 H 0.126 0.874 37 H 0.114 0.886 38 H 0.124 0.876 39 H 0.124 0.876 40 H 0.114 0.886 41 H 0.075 0.925 42 H 0.203 0.797 43 H 0.059 0.941 44 H 0.061 0.939 45 H 0.080 0.920 46 H 0.151 0.849 47 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -16.614 -21.026 -16.014 31.218 hybrid contribution 0.368 1.075 1.045 1.544 sum -16.247 -19.951 -14.968 29.766 Atomic orbital electron populations 1.23322 0.76727 1.05519 1.02130 1.86057 1.23182 1.26393 1.89191 1.19129 0.92783 0.84658 0.99943 1.20491 0.91647 0.98561 1.02762 1.21338 1.01315 0.90670 1.05250 1.19190 0.92807 0.84206 1.00761 1.86172 1.20421 1.27785 1.88443 1.22191 0.80278 0.94986 1.00693 0.86106 1.22495 1.03314 1.04515 0.92959 1.20472 0.80875 0.89285 0.78210 1.90710 1.53290 1.48516 1.53296 1.48363 1.05250 1.18096 1.62167 1.22844 0.85268 0.93591 1.00748 1.23391 0.98809 0.97051 0.99375 1.21412 0.89493 0.93463 0.90029 0.90523 1.42558 1.09857 1.73706 1.10930 1.19636 0.88039 1.31858 0.97634 0.89584 1.25615 1.02269 1.02880 0.96142 1.69828 1.37013 1.52068 1.03323 0.85184 0.80007 0.78286 0.76087 1.20381 1.22814 1.19939 1.22084 0.94856 0.86888 0.97755 1.20427 0.91563 0.98819 1.03563 1.21253 1.01232 0.90614 1.05349 0.92014 0.91725 0.86393 0.83073 0.82336 0.91947 0.87356 0.88625 0.87594 0.87585 0.88627 0.92466 0.79716 0.94126 0.93936 0.91966 0.84871 0.82688 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.14 9.81 113.37 1.11 1.25 16 2 O -0.33 -5.33 10.50 -93.41 -0.98 -6.32 16 3 C 0.08 1.40 6.69 22.49 0.15 1.55 16 4 C -0.12 -1.90 9.98 22.36 0.22 -1.68 16 5 C -0.17 -2.83 8.23 22.35 0.18 -2.65 16 6 C 0.07 1.67 6.60 22.49 0.15 1.82 16 7 O -0.31 -8.49 9.33 -74.31 -0.69 -9.19 16 8 C 0.08 1.70 1.99 29.85 0.06 1.76 16 9 H 0.12 2.01 6.02 -2.39 -0.01 1.99 16 10 C -0.18 -2.55 8.98 71.98 0.65 -1.91 16 11 C 0.52 16.29 7.29 87.66 0.64 16.93 16 12 O -0.58 -24.28 16.83 16.00 0.27 -24.01 16 13 N -0.60 -17.14 3.32 -811.78 -2.70 -19.84 16 14 C 0.10 1.87 5.14 86.86 0.45 2.32 16 15 C -0.15 -4.02 6.77 31.99 0.22 -3.80 16 16 C 0.17 5.94 3.61 46.18 0.17 6.11 16 17 H 0.08 2.63 8.09 -2.39 -0.02 2.61 16 18 N -0.73 -35.27 5.22 -317.33 -1.66 -36.93 16 19 C -0.24 -12.62 9.96 84.03 0.84 -11.79 16 20 H 0.09 4.20 7.83 -2.91 -0.02 4.17 16 21 C -0.08 -4.29 5.50 84.86 0.47 -3.82 16 22 N -0.97 -59.01 13.06 21.65 0.28 -58.73 16 23 Si 0.98 44.75 29.55 68.60 2.03 46.78 16 24 H -0.28 -12.26 7.11 99.48 0.71 -11.55 16 25 H -0.30 -14.23 7.11 99.48 0.71 -13.53 16 26 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 27 C 0.11 3.82 6.62 86.73 0.57 4.39 16 28 C -0.12 -2.59 9.98 22.36 0.22 -2.37 16 29 C -0.17 -2.78 9.03 22.35 0.20 -2.58 16 30 H 0.06 0.43 7.66 -2.39 -0.02 0.41 16 31 H 0.06 0.40 7.66 -2.39 -0.02 0.39 16 32 H 0.12 0.49 8.14 -2.39 -0.02 0.47 16 33 H 0.15 1.87 8.06 -2.91 -0.02 1.84 16 34 H 0.16 1.83 5.41 -2.91 -0.02 1.82 16 35 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 36 H 0.11 1.07 4.99 -2.39 -0.01 1.06 16 37 H 0.10 1.03 6.90 -2.39 -0.02 1.01 16 38 H 0.11 1.38 7.36 -2.38 -0.02 1.36 16 39 H 0.11 1.44 7.07 -2.39 -0.02 1.42 16 40 H 0.10 2.35 8.14 -2.39 -0.02 2.33 16 41 H 0.06 1.83 8.14 -2.39 -0.02 1.81 16 42 H 0.37 19.94 7.56 -92.71 -0.70 19.24 16 43 H 0.25 14.85 8.31 -92.71 -0.77 14.08 16 44 H 0.04 1.75 7.72 -2.39 -0.02 1.73 16 45 H 0.06 2.23 8.14 -2.39 -0.02 2.21 16 46 H 0.13 2.67 8.06 -2.91 -0.02 2.65 16 47 H 0.16 1.76 6.29 -2.91 -0.02 1.74 16 Total: -1.00 -76.68 381.02 3.14 -73.54 By element: Atomic # 1 Polarization: 28.86 SS G_CDS: 0.30 Total: 29.15 kcal Atomic # 6 Polarization: -0.76 SS G_CDS: 6.30 Total: 5.54 kcal Atomic # 7 Polarization: -111.42 SS G_CDS: -4.07 Total: -115.50 kcal Atomic # 8 Polarization: -38.11 SS G_CDS: -1.40 Total: -39.51 kcal Atomic # 14 Polarization: 44.75 SS G_CDS: 2.03 Total: 46.78 kcal Total: -76.68 3.14 -73.54 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001019214851.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.813 kcal (2) G-P(sol) polarization free energy of solvation -76.683 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.496 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.143 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.540 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.353 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds