Wall clock time and date at job start Tue Mar 31 2020 18:03:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09003 * 109.46712 * 2 1 4 4 C 1.50700 * 109.47202 * 119.99560 * 2 1 3 5 5 O 1.21280 * 119.99794 * 92.87220 * 4 2 1 6 6 N 1.34770 * 120.00015 * 272.86830 * 4 2 1 7 7 C 1.48194 * 127.80307 * 176.95217 * 6 4 2 8 8 C 1.54508 * 104.63448 * 140.70733 * 7 6 4 9 9 C 1.53818 * 104.79523 * 23.77446 * 8 7 6 10 10 C 1.48252 * 127.80622 * 356.95551 * 6 4 2 11 11 C 1.52475 * 110.27150 * 118.80921 * 9 8 7 12 12 C 1.53130 * 109.61614 * 182.07423 * 11 9 8 13 13 C 1.53186 * 109.32331 * 299.49050 * 12 11 9 14 14 N 1.47008 * 108.84010 * 55.07829 * 13 12 11 15 15 C 1.36935 * 120.66864 * 125.97137 * 14 13 12 16 16 H 1.08006 * 119.99933 * 330.98929 * 15 14 13 17 17 C 1.38809 * 120.00492 * 150.98627 * 15 14 13 18 18 N 1.31628 * 119.99916 * 341.61788 * 17 15 14 19 19 Si 1.86794 * 120.00451 * 161.61553 * 17 15 14 20 20 H 1.48510 * 109.46989 * 359.97438 * 19 17 15 21 21 H 1.48495 * 109.47598 * 119.99950 * 19 17 15 22 22 H 1.48499 * 109.47151 * 240.00374 * 19 17 15 23 23 C 1.47042 * 118.65051 * 305.96774 * 14 13 12 24 24 C 1.53005 * 109.47100 * 240.00083 * 2 1 3 25 25 F 1.39898 * 109.46555 * 299.99456 * 24 2 1 26 26 F 1.39894 * 109.46882 * 59.99721 * 24 2 1 27 27 F 1.39902 * 109.46724 * 179.97438 * 24 2 1 28 28 H 1.09000 * 109.46581 * 186.23066 * 1 2 3 29 29 H 1.08993 * 109.47190 * 306.22482 * 1 2 3 30 30 H 1.08994 * 109.47133 * 66.23199 * 1 2 3 31 31 H 1.09003 * 110.40066 * 21.92307 * 7 6 4 32 32 H 1.08997 * 110.50099 * 259.55027 * 7 6 4 33 33 H 1.09003 * 110.37525 * 264.94200 * 8 7 6 34 34 H 1.09000 * 110.46320 * 142.65138 * 8 7 6 35 35 H 1.09007 * 110.42838 * 100.41025 * 10 6 4 36 36 H 1.08997 * 110.42693 * 337.92632 * 10 6 4 37 37 H 1.08994 * 109.45136 * 62.02144 * 11 9 8 38 38 H 1.09007 * 109.44457 * 302.11733 * 11 9 8 39 39 H 1.09001 * 109.50201 * 59.45873 * 12 11 9 40 40 H 1.09005 * 109.49668 * 179.52883 * 12 11 9 41 41 H 1.09002 * 109.56730 * 174.92978 * 13 12 11 42 42 H 1.09001 * 109.56674 * 295.29273 * 13 12 11 43 43 H 0.96997 * 119.99859 * 180.02562 * 18 17 15 44 44 H 1.08998 * 109.58215 * 292.98793 * 23 14 13 45 45 H 1.08998 * 109.68943 * 172.64294 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7103 1.2305 5 8 2.2841 -1.8959 1.1860 6 7 2.2019 -0.0281 2.3804 7 6 2.6227 -0.5595 3.6982 8 6 3.5689 0.5198 4.2702 9 6 3.1604 1.8191 3.5553 10 6 2.0096 1.4234 2.6127 11 6 2.6788 2.8510 4.5692 12 6 2.2278 4.1186 3.8380 13 6 3.4095 4.7000 3.0555 14 7 3.9476 3.6603 2.1663 15 6 4.0856 3.8922 0.8238 16 1 3.4212 4.5814 0.3237 17 6 5.0795 3.2418 0.1056 18 7 6.0992 2.6988 0.7365 19 14 4.9701 3.1369 -1.7562 20 1 3.7357 3.8208 -2.2188 21 1 6.1568 3.7946 -2.3597 22 1 4.9302 1.7113 -2.1702 23 6 4.3345 2.3663 2.7478 24 6 2.0400 -0.7213 -1.2493 25 9 1.5737 -2.0402 -1.2491 26 9 1.5736 -0.0618 -2.3915 27 9 3.4390 -0.7207 -1.2495 28 1 -0.3632 -1.0216 0.1115 29 1 -0.3633 0.6073 0.8290 30 1 -0.3633 0.4142 -0.9404 31 1 3.1535 -1.5036 3.5753 32 1 1.7591 -0.6919 4.3498 33 1 4.6064 0.2729 4.0452 34 1 3.4279 0.6185 5.3466 35 1 1.0468 1.6081 3.0893 36 1 2.0815 1.9718 1.6735 37 1 3.4922 3.0959 5.2522 38 1 1.8419 2.4410 5.1347 39 1 1.4202 3.8730 3.1484 40 1 1.8762 4.8518 4.5639 41 1 3.0718 5.5499 2.4624 42 1 4.1845 5.0225 3.7508 43 1 6.7939 2.2446 0.2346 44 1 5.1958 2.5027 3.4018 45 1 4.5878 1.6667 1.9513 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001040327682.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:03:08 Heat of formation + Delta-G solvation = -169.899039 kcal Electronic energy + Delta-G solvation = -32443.871538 eV Core-core repulsion = 27853.619599 eV Total energy + Delta-G solvation = -4590.251939 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.161 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -49.83520 -47.35599 -47.22979 -40.26500 -38.52204 -35.77367 -33.98736 -33.13130 -31.37490 -30.05412 -29.03023 -26.42704 -25.89423 -25.34411 -23.94632 -22.31269 -22.19949 -20.37445 -19.45238 -18.44209 -18.37717 -18.08200 -17.06874 -16.76928 -16.62240 -15.62982 -15.16387 -14.79389 -14.44973 -14.21455 -14.07983 -13.90642 -13.81558 -13.69235 -13.48735 -13.42609 -13.38066 -13.19310 -13.09652 -12.99711 -12.51533 -12.33236 -12.22786 -12.00534 -11.87215 -11.68325 -11.33204 -11.15090 -11.04277 -11.01698 -10.74239 -10.47601 -10.32642 -10.22007 -9.91341 -9.79571 -9.53884 -9.46057 -8.57939 -8.49620 -6.74334 -5.87548 -3.30451 2.50432 2.81648 3.16212 3.34241 3.41780 3.46824 3.87717 4.16980 4.22984 4.43312 4.68425 4.84714 4.92498 5.02901 5.07845 5.18013 5.34939 5.39567 5.41306 5.46617 5.53117 5.56084 5.64665 5.73672 5.82491 5.84670 5.93029 6.02527 6.10775 6.23313 6.26955 6.30294 6.35693 6.57451 6.59421 6.71911 6.81056 6.91152 7.20005 7.52149 7.65709 7.74216 8.17628 8.36599 9.12977 9.76352 10.34283 11.20851 Molecular weight = 334.16amu Principal moments of inertia in cm(-1) A = 0.010267 B = 0.007012 C = 0.005004 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2726.606539 B = 3992.127149 C = 5593.868665 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.164 4.164 3 H 0.142 0.858 4 C 0.549 3.451 5 O -0.533 6.533 6 N -0.610 5.610 7 C 0.109 3.891 8 C -0.126 4.126 9 C -0.094 4.094 10 C 0.112 3.888 11 C -0.094 4.094 12 C -0.136 4.136 13 C 0.143 3.857 14 N -0.590 5.590 15 C -0.263 4.263 16 H 0.066 0.934 17 C 0.013 3.987 18 N -0.893 5.893 19 Si 0.880 3.120 20 H -0.275 1.275 21 H -0.288 1.288 22 H -0.281 1.281 23 C 0.188 3.812 24 C 0.470 3.530 25 F -0.171 7.171 26 F -0.182 7.182 27 F -0.172 7.172 28 H 0.073 0.927 29 H 0.083 0.917 30 H 0.081 0.919 31 H 0.079 0.921 32 H 0.068 0.932 33 H 0.076 0.924 34 H 0.074 0.926 35 H 0.064 0.936 36 H 0.097 0.903 37 H 0.059 0.941 38 H 0.048 0.952 39 H 0.057 0.943 40 H 0.051 0.949 41 H 0.053 0.947 42 H 0.017 0.983 43 H 0.255 0.745 44 H 0.021 0.979 45 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.394 -3.209 5.103 12.890 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.186 4.186 3 H 0.160 0.840 4 C 0.336 3.664 5 O -0.410 6.410 6 N -0.343 5.343 7 C -0.013 4.013 8 C -0.164 4.164 9 C -0.097 4.097 10 C -0.010 4.010 11 C -0.131 4.131 12 C -0.176 4.176 13 C 0.016 3.984 14 N -0.313 5.313 15 C -0.392 4.392 16 H 0.084 0.916 17 C -0.187 4.187 18 N -0.536 5.536 19 Si 0.708 3.292 20 H -0.199 1.199 21 H -0.215 1.215 22 H -0.207 1.207 23 C 0.062 3.938 24 C 0.415 3.585 25 F -0.152 7.152 26 F -0.163 7.163 27 F -0.153 7.153 28 H 0.092 0.908 29 H 0.101 0.899 30 H 0.100 0.900 31 H 0.098 0.902 32 H 0.086 0.914 33 H 0.095 0.905 34 H 0.093 0.907 35 H 0.082 0.918 36 H 0.115 0.885 37 H 0.078 0.922 38 H 0.067 0.933 39 H 0.076 0.924 40 H 0.069 0.931 41 H 0.071 0.929 42 H 0.035 0.965 43 H 0.065 0.935 44 H 0.039 0.961 45 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -11.106 -3.992 4.856 12.761 hybrid contribution 0.300 0.002 -1.136 1.175 sum -10.805 -3.990 3.720 12.104 Atomic orbital electron populations 1.21735 0.89233 1.04243 1.04718 1.22605 1.01198 1.03801 0.91033 0.83986 1.19180 0.77900 0.86477 0.82813 1.90763 1.51426 1.14902 1.83958 1.48852 1.66256 1.10461 1.08712 1.22328 0.97844 0.98285 0.82865 1.22571 1.00072 0.94305 0.99498 1.21837 0.98148 0.94081 0.95640 1.22630 0.97666 0.78939 1.01726 1.21380 0.99709 0.95386 0.96673 1.22062 0.99863 0.96757 0.98891 1.20937 0.92892 0.91825 0.92697 1.44093 1.74447 1.08734 1.04005 1.19143 1.10859 1.26055 0.83178 0.91606 1.25016 0.94667 1.01410 0.97653 1.70022 1.09420 1.39654 1.34527 0.86581 0.77919 0.78295 0.86358 1.19938 1.21452 1.20664 1.20712 0.89825 0.87865 0.95363 1.19835 0.76155 0.77794 0.84722 1.93199 1.88290 1.37065 1.96670 1.93167 1.88557 1.80915 1.53689 1.93263 1.29083 1.96320 1.96658 0.90786 0.89855 0.89968 0.90231 0.91411 0.90536 0.90694 0.91802 0.88462 0.92191 0.93302 0.92389 0.93052 0.92853 0.96537 0.93516 0.96061 0.89757 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.65 8.94 37.16 0.33 -1.32 16 2 C -0.16 -2.58 2.33 -91.77 -0.21 -2.80 16 3 H 0.14 2.29 6.59 -51.93 -0.34 1.95 16 4 C 0.55 9.70 6.73 -10.99 -0.07 9.63 16 5 O -0.53 -10.89 15.49 5.56 0.09 -10.80 16 6 N -0.61 -9.77 3.32 -169.39 -0.56 -10.33 16 7 C 0.11 1.52 7.07 -2.32 -0.02 1.51 16 8 C -0.13 -1.77 6.29 -25.51 -0.16 -1.93 16 9 C -0.09 -1.51 0.68 -154.05 -0.11 -1.61 16 10 C 0.11 1.71 4.83 -2.59 -0.01 1.70 16 11 C -0.09 -1.30 4.34 -26.93 -0.12 -1.42 16 12 C -0.14 -2.00 5.89 -26.57 -0.16 -2.15 16 13 C 0.14 2.67 6.50 -3.67 -0.02 2.65 16 14 N -0.59 -13.21 2.49 -172.50 -0.43 -13.64 16 15 C -0.26 -6.63 9.57 -15.06 -0.14 -6.78 16 16 H 0.07 1.64 7.90 -52.48 -0.41 1.23 16 17 C 0.01 0.34 4.87 -17.43 -0.08 0.25 16 18 N -0.89 -25.08 11.38 55.49 0.63 -24.45 16 19 Si 0.88 21.13 29.59 -169.99 -5.03 16.10 16 20 H -0.27 -6.34 7.11 56.52 0.40 -5.93 16 21 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 22 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 23 C 0.19 4.02 3.66 -3.93 -0.01 4.01 16 24 C 0.47 8.28 2.50 37.16 0.09 8.38 16 25 F -0.17 -3.01 15.53 2.25 0.03 -2.98 16 26 F -0.18 -3.01 16.69 2.25 0.04 -2.97 16 27 F -0.17 -3.60 17.00 2.25 0.04 -3.56 16 28 H 0.07 0.86 7.97 -51.93 -0.41 0.44 16 29 H 0.08 0.83 8.14 -51.93 -0.42 0.40 16 30 H 0.08 0.84 7.63 -51.93 -0.40 0.45 16 31 H 0.08 1.18 7.86 -51.93 -0.41 0.77 16 32 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 33 H 0.08 1.20 7.70 -51.93 -0.40 0.80 16 34 H 0.07 0.87 7.70 -51.93 -0.40 0.47 16 35 H 0.06 0.83 7.70 -51.93 -0.40 0.43 16 36 H 0.10 1.69 5.93 -51.93 -0.31 1.39 16 37 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 38 H 0.05 0.58 8.13 -51.92 -0.42 0.16 16 39 H 0.06 0.84 7.20 -51.93 -0.37 0.47 16 40 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 41 H 0.05 0.99 7.94 -51.93 -0.41 0.58 16 42 H 0.02 0.32 8.14 -51.93 -0.42 -0.10 16 43 H 0.25 7.07 8.31 -40.82 -0.34 6.73 16 44 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 45 H 0.08 2.11 6.23 -51.93 -0.32 1.79 16 LS Contribution 360.66 15.07 5.44 5.44 Total: -1.00 -30.02 360.66 -7.14 -37.16 By element: Atomic # 1 Polarization: 6.60 SS G_CDS: -6.69 Total: -0.08 kcal Atomic # 6 Polarization: 10.81 SS G_CDS: -0.70 Total: 10.11 kcal Atomic # 7 Polarization: -48.06 SS G_CDS: -0.36 Total: -48.42 kcal Atomic # 8 Polarization: -10.89 SS G_CDS: 0.09 Total: -10.80 kcal Atomic # 9 Polarization: -9.62 SS G_CDS: 0.11 Total: -9.51 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.03 Total: 16.10 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -30.02 -7.14 -37.16 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001040327682.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -132.736 kcal (2) G-P(sol) polarization free energy of solvation -30.021 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -162.757 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.142 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.163 kcal (6) G-S(sol) free energy of system = (1) + (5) -169.899 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds