Wall clock time and date at job start Tue Mar 31 2020 18:03:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09003 * 109.46712 * 2 1 4 4 C 1.50700 * 109.47202 * 119.99560 * 2 1 3 5 5 O 1.21280 * 119.99794 * 92.87220 * 4 2 1 6 6 N 1.34770 * 120.00015 * 272.86830 * 4 2 1 7 7 C 1.48194 * 127.80307 * 176.95217 * 6 4 2 8 8 C 1.54508 * 104.63448 * 140.70733 * 7 6 4 9 9 C 1.53818 * 104.79523 * 23.77446 * 8 7 6 10 10 C 1.48252 * 127.80622 * 356.95551 * 6 4 2 11 11 C 1.52475 * 110.27150 * 118.80921 * 9 8 7 12 12 C 1.53130 * 109.61614 * 182.07423 * 11 9 8 13 13 C 1.53186 * 109.32331 * 299.49050 * 12 11 9 14 14 N 1.47008 * 108.84010 * 55.07829 * 13 12 11 15 15 C 1.36935 * 120.66864 * 125.97137 * 14 13 12 16 16 H 1.08006 * 119.99933 * 330.98929 * 15 14 13 17 17 C 1.38809 * 120.00492 * 150.98627 * 15 14 13 18 18 N 1.31628 * 119.99916 * 341.61788 * 17 15 14 19 19 Si 1.86794 * 120.00451 * 161.61553 * 17 15 14 20 20 H 1.48510 * 109.46989 * 359.97438 * 19 17 15 21 21 H 1.48495 * 109.47598 * 119.99950 * 19 17 15 22 22 H 1.48499 * 109.47151 * 240.00374 * 19 17 15 23 23 C 1.47042 * 118.65051 * 305.96774 * 14 13 12 24 24 C 1.53005 * 109.47100 * 240.00083 * 2 1 3 25 25 F 1.39898 * 109.46555 * 299.99456 * 24 2 1 26 26 F 1.39894 * 109.46882 * 59.99721 * 24 2 1 27 27 F 1.39902 * 109.46724 * 179.97438 * 24 2 1 28 28 H 1.09000 * 109.46581 * 186.23066 * 1 2 3 29 29 H 1.08993 * 109.47190 * 306.22482 * 1 2 3 30 30 H 1.08994 * 109.47133 * 66.23199 * 1 2 3 31 31 H 1.09003 * 110.40066 * 21.92307 * 7 6 4 32 32 H 1.08997 * 110.50099 * 259.55027 * 7 6 4 33 33 H 1.09003 * 110.37525 * 264.94200 * 8 7 6 34 34 H 1.09000 * 110.46320 * 142.65138 * 8 7 6 35 35 H 1.09007 * 110.42838 * 100.41025 * 10 6 4 36 36 H 1.08997 * 110.42693 * 337.92632 * 10 6 4 37 37 H 1.08994 * 109.45136 * 62.02144 * 11 9 8 38 38 H 1.09007 * 109.44457 * 302.11733 * 11 9 8 39 39 H 1.09001 * 109.50201 * 59.45873 * 12 11 9 40 40 H 1.09005 * 109.49668 * 179.52883 * 12 11 9 41 41 H 1.09002 * 109.56730 * 174.92978 * 13 12 11 42 42 H 1.09001 * 109.56674 * 295.29273 * 13 12 11 43 43 H 0.96997 * 119.99859 * 180.02562 * 18 17 15 44 44 H 1.08998 * 109.58215 * 292.98793 * 23 14 13 45 45 H 1.08998 * 109.68943 * 172.64294 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7103 1.2305 5 8 2.2841 -1.8959 1.1860 6 7 2.2019 -0.0281 2.3804 7 6 2.6227 -0.5595 3.6982 8 6 3.5689 0.5198 4.2702 9 6 3.1604 1.8191 3.5553 10 6 2.0096 1.4234 2.6127 11 6 2.6788 2.8510 4.5692 12 6 2.2278 4.1186 3.8380 13 6 3.4095 4.7000 3.0555 14 7 3.9476 3.6603 2.1663 15 6 4.0856 3.8922 0.8238 16 1 3.4212 4.5814 0.3237 17 6 5.0795 3.2418 0.1056 18 7 6.0992 2.6988 0.7365 19 14 4.9701 3.1369 -1.7562 20 1 3.7357 3.8208 -2.2188 21 1 6.1568 3.7946 -2.3597 22 1 4.9302 1.7113 -2.1702 23 6 4.3345 2.3663 2.7478 24 6 2.0400 -0.7213 -1.2493 25 9 1.5737 -2.0402 -1.2491 26 9 1.5736 -0.0618 -2.3915 27 9 3.4390 -0.7207 -1.2495 28 1 -0.3632 -1.0216 0.1115 29 1 -0.3633 0.6073 0.8290 30 1 -0.3633 0.4142 -0.9404 31 1 3.1535 -1.5036 3.5753 32 1 1.7591 -0.6919 4.3498 33 1 4.6064 0.2729 4.0452 34 1 3.4279 0.6185 5.3466 35 1 1.0468 1.6081 3.0893 36 1 2.0815 1.9718 1.6735 37 1 3.4922 3.0959 5.2522 38 1 1.8419 2.4410 5.1347 39 1 1.4202 3.8730 3.1484 40 1 1.8762 4.8518 4.5639 41 1 3.0718 5.5499 2.4624 42 1 4.1845 5.0225 3.7508 43 1 6.7939 2.2446 0.2346 44 1 5.1958 2.5027 3.4018 45 1 4.5878 1.6667 1.9513 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001040327682.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:03:08 Heat of formation + Delta-G solvation = -186.881807 kcal Electronic energy + Delta-G solvation = -32444.607966 eV Core-core repulsion = 27853.619599 eV Total energy + Delta-G solvation = -4590.988367 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.161 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -51.26652 -48.79814 -48.68299 -41.56554 -39.91055 -37.25381 -35.23127 -34.77605 -32.81432 -31.69220 -30.27729 -27.58600 -27.43753 -26.93270 -25.24622 -23.88711 -23.49396 -21.75851 -20.76191 -19.81756 -19.79299 -19.52491 -18.59883 -18.23219 -18.10757 -16.88741 -16.81064 -16.26636 -15.78802 -15.73443 -15.59693 -15.35587 -15.26035 -15.16020 -14.92763 -14.87451 -14.83239 -14.51566 -14.47423 -14.21983 -13.85133 -13.54213 -13.50128 -13.28271 -13.13719 -12.96720 -12.86034 -12.79772 -12.56952 -12.43099 -12.34472 -12.10846 -11.86228 -11.69868 -11.39039 -11.13336 -10.95885 -10.89139 -10.54285 -9.78868 -8.63250 -7.88909 -5.31282 1.16642 1.37400 1.44199 1.50341 1.54672 1.86059 2.47117 2.54015 2.86654 2.89306 3.27273 3.39746 3.58774 3.74028 3.78868 3.86066 3.94451 4.02995 4.30681 4.37570 4.42100 4.51604 4.56872 4.58762 4.63577 4.74989 4.87186 4.88016 4.97055 4.99865 5.02672 5.10465 5.20735 5.23011 5.29009 5.43018 5.44964 5.55985 5.64707 5.72377 5.79355 6.37191 6.39701 6.85980 7.16544 7.90072 8.41359 9.16501 Molecular weight = 334.16amu Principal moments of inertia in cm(-1) A = 0.010267 B = 0.007012 C = 0.005004 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2726.606539 B = 3992.127149 C = 5593.868665 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.159 4.159 3 H 0.136 0.864 4 C 0.541 3.459 5 O -0.571 6.571 6 N -0.612 5.612 7 C 0.108 3.892 8 C -0.119 4.119 9 C -0.089 4.089 10 C 0.117 3.883 11 C -0.088 4.088 12 C -0.125 4.125 13 C 0.135 3.865 14 N -0.604 5.604 15 C -0.247 4.247 16 H 0.072 0.928 17 C -0.037 4.037 18 N -0.929 5.929 19 Si 0.923 3.077 20 H -0.253 1.253 21 H -0.296 1.296 22 H -0.298 1.298 23 C 0.201 3.799 24 C 0.462 3.538 25 F -0.172 7.172 26 F -0.175 7.175 27 F -0.199 7.199 28 H 0.074 0.926 29 H 0.108 0.892 30 H 0.097 0.903 31 H 0.063 0.937 32 H 0.108 0.892 33 H 0.047 0.953 34 H 0.113 0.887 35 H 0.107 0.893 36 H 0.073 0.927 37 H 0.057 0.943 38 H 0.092 0.908 39 H 0.066 0.934 40 H 0.083 0.917 41 H 0.052 0.948 42 H 0.006 0.994 43 H 0.243 0.757 44 H -0.014 1.014 45 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.010 -2.237 7.141 16.772 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.181 4.181 3 H 0.154 0.846 4 C 0.329 3.671 5 O -0.451 6.451 6 N -0.343 5.343 7 C -0.014 4.014 8 C -0.158 4.158 9 C -0.092 4.092 10 C -0.004 4.004 11 C -0.126 4.126 12 C -0.164 4.164 13 C 0.010 3.990 14 N -0.327 5.327 15 C -0.377 4.377 16 H 0.089 0.911 17 C -0.234 4.234 18 N -0.575 5.575 19 Si 0.752 3.248 20 H -0.177 1.177 21 H -0.223 1.223 22 H -0.226 1.226 23 C 0.075 3.925 24 C 0.407 3.593 25 F -0.153 7.153 26 F -0.157 7.157 27 F -0.180 7.180 28 H 0.093 0.907 29 H 0.126 0.874 30 H 0.116 0.884 31 H 0.082 0.918 32 H 0.126 0.874 33 H 0.065 0.935 34 H 0.131 0.869 35 H 0.125 0.875 36 H 0.092 0.908 37 H 0.075 0.925 38 H 0.110 0.890 39 H 0.085 0.915 40 H 0.101 0.899 41 H 0.070 0.930 42 H 0.024 0.976 43 H 0.053 0.947 44 H 0.004 0.996 45 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -14.762 -2.969 6.924 16.573 hybrid contribution 1.476 -0.225 -1.739 2.292 sum -13.286 -3.194 5.184 14.615 Atomic orbital electron populations 1.21828 0.85714 1.05047 1.06654 1.22669 1.03967 1.02440 0.89064 0.84619 1.19505 0.77684 0.86244 0.83655 1.90737 1.53268 1.16495 1.84598 1.48979 1.65331 1.10978 1.09028 1.22531 0.99126 0.97313 0.82405 1.22551 0.98519 0.93208 1.01522 1.21666 0.96100 0.95471 0.95928 1.22676 0.99070 0.77960 1.00707 1.21391 1.01106 0.94217 0.95899 1.21945 0.97669 0.97626 0.99158 1.21149 0.94272 0.91213 0.92346 1.44344 1.74402 1.10236 1.03753 1.19451 1.09344 1.24141 0.84788 0.91064 1.25523 0.95010 1.02617 1.00220 1.70161 1.10429 1.41741 1.35150 0.85859 0.78284 0.77127 0.83489 1.17667 1.22341 1.22560 1.20405 0.91331 0.86883 0.93835 1.20238 0.75003 0.78113 0.85899 1.93189 1.88092 1.37288 1.96741 1.93170 1.88263 1.80710 1.53539 1.93210 1.31520 1.96464 1.96847 0.90661 0.87351 0.88438 0.91814 0.87405 0.93453 0.86920 0.87478 0.90813 0.92459 0.88968 0.91488 0.89874 0.92990 0.97578 0.94729 0.99592 0.94298 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.79 8.94 71.98 0.64 -2.14 16 2 C -0.16 -4.89 2.33 -11.54 -0.03 -4.92 16 3 H 0.14 4.34 6.59 -2.39 -0.02 4.32 16 4 C 0.54 18.87 6.73 87.66 0.59 19.46 16 5 O -0.57 -23.57 15.49 -3.03 -0.05 -23.61 16 6 N -0.61 -18.51 3.32 -808.21 -2.68 -21.20 16 7 C 0.11 2.74 7.07 86.57 0.61 3.35 16 8 C -0.12 -3.10 6.29 31.38 0.20 -2.90 16 9 C -0.09 -2.64 0.68 -51.88 -0.04 -2.68 16 10 C 0.12 3.21 4.83 86.36 0.42 3.62 16 11 C -0.09 -2.04 4.34 30.46 0.13 -1.91 16 12 C -0.13 -3.08 5.89 30.70 0.18 -2.90 16 13 C 0.14 4.82 6.50 86.34 0.56 5.38 16 14 N -0.60 -26.99 2.49 -699.65 -1.74 -28.73 16 15 C -0.25 -12.52 9.57 84.03 0.80 -11.72 16 16 H 0.07 3.50 7.90 -2.91 -0.02 3.47 16 17 C -0.04 -2.05 4.87 84.86 0.41 -1.63 16 18 N -0.93 -54.95 11.38 21.65 0.25 -54.71 16 19 Si 0.92 44.70 29.59 68.60 2.03 46.73 16 20 H -0.25 -11.21 7.11 99.48 0.71 -10.50 16 21 H -0.30 -14.59 7.11 99.48 0.71 -13.88 16 22 H -0.30 -15.19 7.11 99.48 0.71 -14.48 16 23 C 0.20 8.78 3.66 86.16 0.32 9.09 16 24 C 0.46 16.46 2.50 71.98 0.18 16.63 16 25 F -0.17 -6.10 15.53 44.97 0.70 -5.40 16 26 F -0.18 -5.74 16.69 44.97 0.75 -4.98 16 27 F -0.20 -8.71 17.00 44.97 0.76 -7.95 16 28 H 0.07 1.56 7.97 -2.39 -0.02 1.54 16 29 H 0.11 1.70 8.14 -2.39 -0.02 1.68 16 30 H 0.10 1.72 7.63 -2.39 -0.02 1.70 16 31 H 0.06 1.84 7.86 -2.39 -0.02 1.82 16 32 H 0.11 1.96 8.14 -2.39 -0.02 1.94 16 33 H 0.05 1.50 7.70 -2.39 -0.02 1.49 16 34 H 0.11 2.11 7.70 -2.39 -0.02 2.09 16 35 H 0.11 2.10 7.70 -2.38 -0.02 2.08 16 36 H 0.07 2.42 5.93 -2.39 -0.01 2.41 16 37 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 38 H 0.09 1.47 8.13 -2.38 -0.02 1.45 16 39 H 0.07 1.58 7.20 -2.39 -0.02 1.56 16 40 H 0.08 1.61 8.14 -2.38 -0.02 1.59 16 41 H 0.05 1.83 7.94 -2.39 -0.02 1.82 16 42 H 0.01 0.23 8.14 -2.39 -0.02 0.21 16 43 H 0.24 14.41 8.31 -92.71 -0.77 13.64 16 44 H -0.01 -0.69 8.14 -2.39 -0.02 -0.71 16 45 H 0.04 2.05 6.23 -2.39 -0.01 2.03 16 Total: -1.00 -70.49 360.66 6.00 -64.49 By element: Atomic # 1 Polarization: 7.63 SS G_CDS: 1.00 Total: 8.63 kcal Atomic # 6 Polarization: 21.75 SS G_CDS: 4.98 Total: 26.73 kcal Atomic # 7 Polarization: -100.46 SS G_CDS: -4.18 Total: -104.64 kcal Atomic # 8 Polarization: -23.57 SS G_CDS: -0.05 Total: -23.61 kcal Atomic # 9 Polarization: -20.54 SS G_CDS: 2.21 Total: -18.33 kcal Atomic # 14 Polarization: 44.70 SS G_CDS: 2.03 Total: 46.73 kcal Total: -70.49 6.00 -64.49 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001040327682.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -122.390 kcal (2) G-P(sol) polarization free energy of solvation -70.493 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -192.883 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.001 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.492 kcal (6) G-S(sol) free energy of system = (1) + (5) -186.882 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds