Wall clock time and date at job start Tue Mar 31 2020 18:03:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09000 * 109.47055 * 2 1 4 4 C 1.50710 * 109.47007 * 240.00345 * 2 1 3 5 5 O 1.21276 * 119.99899 * 268.59754 * 4 2 1 6 6 N 1.34775 * 120.00050 * 88.59731 * 4 2 1 7 7 C 1.48213 * 127.05329 * 184.44074 * 6 4 2 8 8 C 1.55046 * 103.33582 * 219.01282 * 7 6 4 9 9 C 1.54154 * 102.73281 * 323.02115 * 8 7 6 10 10 C 1.47615 * 127.02626 * 4.48207 * 6 4 2 11 11 C 1.52494 * 110.05280 * 262.54267 * 9 8 7 12 12 C 1.53132 * 109.60615 * 178.25953 * 11 9 8 13 13 C 1.53193 * 109.28797 * 60.51607 * 12 11 9 14 14 N 1.46924 * 108.89129 * 304.93119 * 13 12 11 15 15 C 1.36938 * 120.68161 * 234.03821 * 14 13 12 16 16 H 1.07999 * 119.99775 * 24.46914 * 15 14 13 17 17 C 1.38810 * 120.00150 * 204.47521 * 15 14 13 18 18 N 1.31621 * 119.99947 * 19.81219 * 17 15 14 19 19 Si 1.86795 * 120.00130 * 199.80938 * 17 15 14 20 20 H 1.48501 * 109.46865 * 59.99954 * 19 17 15 21 21 H 1.48506 * 109.47432 * 180.02562 * 19 17 15 22 22 H 1.48499 * 109.47208 * 300.00391 * 19 17 15 23 23 C 1.47037 * 118.64338 * 54.01803 * 14 13 12 24 24 C 1.52997 * 109.47674 * 120.00205 * 2 1 3 25 25 F 1.39892 * 109.47274 * 180.02562 * 24 2 1 26 26 F 1.39898 * 109.46633 * 300.00224 * 24 2 1 27 27 F 1.39901 * 109.47073 * 59.99942 * 24 2 1 28 28 H 1.09000 * 109.46719 * 303.00357 * 1 2 3 29 29 H 1.08995 * 109.47349 * 63.00683 * 1 2 3 30 30 H 1.09003 * 109.46812 * 183.01050 * 1 2 3 31 31 H 1.09002 * 110.61916 * 100.55848 * 7 6 4 32 32 H 1.09000 * 110.79677 * 337.55023 * 7 6 4 33 33 H 1.09001 * 110.75409 * 204.71154 * 8 7 6 34 34 H 1.08998 * 110.75895 * 81.33331 * 8 7 6 35 35 H 1.09000 * 109.97307 * 35.26329 * 10 6 4 36 36 H 1.09002 * 109.97246 * 274.03190 * 10 6 4 37 37 H 1.08996 * 109.45162 * 298.29809 * 11 9 8 38 38 H 1.08996 * 109.44609 * 58.24832 * 11 9 8 39 39 H 1.08994 * 109.50267 * 180.46310 * 12 11 9 40 40 H 1.09005 * 109.50249 * 300.57487 * 12 11 9 41 41 H 1.08995 * 109.56377 * 64.75566 * 13 12 11 42 42 H 1.08995 * 109.56493 * 185.11254 * 13 12 11 43 43 H 0.96998 * 119.99779 * 179.97438 * 18 17 15 44 44 H 1.09002 * 109.58209 * 187.42538 * 23 14 13 45 45 H 1.08995 * 109.58589 * 67.01042 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2306 5 8 2.2587 -1.9013 -1.1934 6 7 2.2300 -0.0223 -2.3724 7 6 2.6287 -0.5730 -3.6894 8 6 3.6168 0.4891 -4.2369 9 6 2.9950 1.8136 -3.7519 10 6 2.0945 1.4347 -2.5671 11 6 2.1668 2.4419 -4.8676 12 6 1.5191 3.7339 -4.3615 13 6 2.6148 4.7168 -3.9371 14 7 3.4848 4.0623 -2.9505 15 6 3.7229 4.6441 -1.7339 16 1 3.0116 5.3447 -1.3220 17 6 4.8784 4.3335 -1.0303 18 7 5.9111 3.8123 -1.6581 19 14 4.9677 4.6555 0.8076 20 1 3.9073 3.8785 1.4982 21 1 6.2988 4.2403 1.3188 22 1 4.7683 6.1040 1.0667 23 6 4.0943 2.7696 -3.2959 24 6 2.0401 -0.7213 1.2492 25 9 3.4391 -0.7207 1.2494 26 9 1.5738 -0.0618 2.3914 27 9 1.5739 -2.0403 1.2491 28 1 -0.3633 0.5598 0.8619 29 1 -0.3634 0.4664 -0.9157 30 1 -0.3633 -1.0263 0.0540 31 1 1.7626 -0.6662 -4.3446 32 1 3.1257 -1.5359 -3.5718 33 1 3.6550 0.4561 -5.3257 34 1 4.6099 0.3493 -3.8099 35 1 2.4184 1.9619 -1.6697 36 1 1.0579 1.6855 -2.7922 37 1 2.8128 2.6680 -5.7159 38 1 1.3893 1.7445 -5.1792 39 1 0.9210 4.1772 -5.1577 40 1 0.8801 3.5102 -3.5072 41 1 3.2031 5.0058 -4.8080 42 1 2.1593 5.6014 -3.4922 43 1 6.7187 3.5956 -1.1664 44 1 4.5972 2.3574 -2.4211 45 1 4.8147 2.9090 -4.1020 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001040327684.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:03:11 Heat of formation + Delta-G solvation = -169.435139 kcal Electronic energy + Delta-G solvation = -31925.211985 eV Core-core repulsion = 27334.980163 eV Total energy + Delta-G solvation = -4590.231822 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.161 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -49.97732 -47.49469 -47.38107 -40.33661 -38.60630 -35.82497 -34.07756 -33.13383 -31.46719 -30.05847 -29.08061 -26.52866 -25.87300 -25.37481 -24.00677 -22.31317 -22.23752 -20.43687 -19.56688 -18.54453 -18.43111 -18.19832 -17.15169 -16.82838 -16.68076 -15.77719 -15.11875 -14.85879 -14.58292 -14.31384 -14.12031 -13.99065 -13.92962 -13.84342 -13.60993 -13.53659 -13.42674 -13.24778 -13.10665 -12.90821 -12.61658 -12.48484 -12.27453 -12.02532 -11.84091 -11.76140 -11.43244 -11.25156 -11.06391 -10.96401 -10.73271 -10.48910 -10.40199 -10.28926 -9.91648 -9.84616 -9.55498 -9.51179 -8.60109 -8.49998 -6.81468 -5.88481 -3.27048 2.40416 2.70987 3.06711 3.32520 3.39884 3.42060 3.75218 4.06692 4.10277 4.41740 4.59089 4.79574 4.85083 4.93956 4.99029 5.14707 5.32509 5.34925 5.36780 5.42828 5.48833 5.53406 5.62120 5.72396 5.79410 5.85789 5.94756 6.01928 6.07830 6.23810 6.26135 6.28708 6.33948 6.54770 6.59721 6.68838 6.78316 6.89161 7.19775 7.52849 7.58734 7.71192 8.08710 8.32756 9.10994 9.75415 10.30791 11.19870 Molecular weight = 334.16amu Principal moments of inertia in cm(-1) A = 0.010160 B = 0.005985 C = 0.004450 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2755.343468 B = 4677.288471 C = 6290.822773 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.164 4.164 3 H 0.139 0.861 4 C 0.544 3.456 5 O -0.533 6.533 6 N -0.610 5.610 7 C 0.108 3.892 8 C -0.124 4.124 9 C -0.092 4.092 10 C 0.113 3.887 11 C -0.095 4.095 12 C -0.137 4.137 13 C 0.144 3.856 14 N -0.592 5.592 15 C -0.256 4.256 16 H 0.068 0.932 17 C 0.004 3.996 18 N -0.898 5.898 19 Si 0.893 3.107 20 H -0.283 1.283 21 H -0.289 1.289 22 H -0.282 1.282 23 C 0.184 3.816 24 C 0.471 3.529 25 F -0.176 7.176 26 F -0.181 7.181 27 F -0.169 7.169 28 H 0.082 0.918 29 H 0.083 0.917 30 H 0.074 0.926 31 H 0.070 0.930 32 H 0.080 0.920 33 H 0.079 0.921 34 H 0.078 0.922 35 H 0.091 0.909 36 H 0.064 0.936 37 H 0.060 0.940 38 H 0.047 0.953 39 H 0.051 0.949 40 H 0.058 0.942 41 H 0.017 0.983 42 H 0.053 0.947 43 H 0.256 0.744 44 H 0.093 0.907 45 H 0.022 0.978 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.733 -6.456 -2.532 12.778 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.186 4.186 3 H 0.157 0.843 4 C 0.330 3.670 5 O -0.410 6.410 6 N -0.343 5.343 7 C -0.014 4.014 8 C -0.163 4.163 9 C -0.094 4.094 10 C -0.008 4.008 11 C -0.132 4.132 12 C -0.176 4.176 13 C 0.017 3.983 14 N -0.314 5.314 15 C -0.385 4.385 16 H 0.086 0.914 17 C -0.195 4.195 18 N -0.542 5.542 19 Si 0.723 3.277 20 H -0.209 1.209 21 H -0.215 1.215 22 H -0.208 1.208 23 C 0.058 3.942 24 C 0.416 3.584 25 F -0.157 7.157 26 F -0.162 7.162 27 F -0.150 7.150 28 H 0.101 0.899 29 H 0.101 0.899 30 H 0.093 0.907 31 H 0.088 0.912 32 H 0.099 0.901 33 H 0.097 0.903 34 H 0.096 0.904 35 H 0.109 0.891 36 H 0.082 0.918 37 H 0.078 0.922 38 H 0.066 0.934 39 H 0.070 0.930 40 H 0.077 0.923 41 H 0.035 0.965 42 H 0.071 0.929 43 H 0.066 0.934 44 H 0.111 0.889 45 H 0.040 0.960 Dipole moment (debyes) X Y Z Total from point charges -10.437 -7.170 -2.312 12.872 hybrid contribution 0.297 0.277 1.116 1.188 sum -10.140 -6.893 -1.196 12.319 Atomic orbital electron populations 1.21731 0.89060 1.04353 1.04793 1.22617 1.01464 1.03468 0.91057 0.84339 1.19234 0.78102 0.86666 0.82987 1.90765 1.51922 1.14549 1.83803 1.48816 1.66905 1.09689 1.08911 1.22502 0.97917 0.98216 0.82809 1.22744 0.99071 0.93841 1.00654 1.21811 0.97751 0.95873 0.94008 1.22382 0.99409 0.78135 1.00921 1.21392 0.98155 0.96603 0.97080 1.22077 0.98935 0.96850 0.99784 1.20905 0.91172 0.93774 0.92436 1.44112 1.54753 1.18551 1.13981 1.19134 1.01791 1.24077 0.93537 0.91445 1.24930 0.94694 1.01322 0.98526 1.70016 1.02757 1.47164 1.34311 0.86511 0.77087 0.78218 0.85919 1.20915 1.21526 1.20816 1.20840 0.89787 0.83736 0.99865 1.19832 0.75892 0.77915 0.84756 1.93226 1.29448 1.96377 1.96699 1.93179 1.88534 1.80887 1.53630 1.93209 1.88228 1.36943 1.96650 0.89889 0.89858 0.90659 0.91226 0.90107 0.90289 0.90352 0.89122 0.91752 0.92154 0.93398 0.93020 0.92315 0.96505 0.92872 0.93442 0.88876 0.96004 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.54 8.93 37.16 0.33 -1.21 16 2 C -0.16 -2.35 2.35 -91.77 -0.22 -2.56 16 3 H 0.14 1.98 6.64 -51.93 -0.34 1.63 16 4 C 0.54 8.97 6.69 -10.98 -0.07 8.89 16 5 O -0.53 -10.23 15.47 5.56 0.09 -10.14 16 6 N -0.61 -9.40 3.30 -169.78 -0.56 -9.96 16 7 C 0.11 1.46 7.11 -2.02 -0.01 1.45 16 8 C -0.12 -1.75 6.15 -25.05 -0.15 -1.91 16 9 C -0.09 -1.46 0.62 -154.05 -0.09 -1.56 16 10 C 0.11 1.76 5.30 -3.14 -0.02 1.74 16 11 C -0.09 -1.32 4.40 -26.92 -0.12 -1.44 16 12 C -0.14 -2.01 5.87 -26.56 -0.16 -2.17 16 13 C 0.14 2.67 6.50 -3.71 -0.02 2.64 16 14 N -0.59 -13.14 2.78 -172.56 -0.48 -13.62 16 15 C -0.26 -6.41 9.61 -15.06 -0.14 -6.55 16 16 H 0.07 1.66 7.89 -52.49 -0.41 1.25 16 17 C 0.00 0.11 4.88 -17.43 -0.09 0.03 16 18 N -0.90 -24.71 11.13 55.49 0.62 -24.09 16 19 Si 0.89 20.82 29.60 -169.99 -5.03 15.79 16 20 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 21 H -0.29 -6.95 7.11 56.52 0.40 -6.54 16 22 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 23 C 0.18 3.88 3.64 -3.93 -0.01 3.86 16 24 C 0.47 7.40 2.51 37.16 0.09 7.49 16 25 F -0.18 -3.17 17.02 2.25 0.04 -3.14 16 26 F -0.18 -2.66 16.85 2.25 0.04 -2.62 16 27 F -0.17 -2.74 15.35 2.25 0.03 -2.70 16 28 H 0.08 0.78 7.89 -51.93 -0.41 0.37 16 29 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 30 H 0.07 0.82 7.72 -51.93 -0.40 0.42 16 31 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 32 H 0.08 1.14 7.83 -51.93 -0.41 0.73 16 33 H 0.08 0.95 7.83 -51.93 -0.41 0.54 16 34 H 0.08 1.23 7.84 -51.93 -0.41 0.83 16 35 H 0.09 1.64 6.37 -51.93 -0.33 1.31 16 36 H 0.06 0.89 6.54 -51.93 -0.34 0.55 16 37 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 38 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 39 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 40 H 0.06 0.86 6.65 -51.93 -0.35 0.52 16 41 H 0.02 0.32 8.14 -51.93 -0.42 -0.10 16 42 H 0.05 0.98 7.92 -51.93 -0.41 0.57 16 43 H 0.26 6.94 8.31 -40.82 -0.34 6.60 16 44 H 0.09 2.29 5.91 -51.93 -0.31 1.98 16 45 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 LS Contribution 359.71 15.07 5.42 5.42 Total: -1.00 -29.08 359.71 -7.14 -36.22 By element: Atomic # 1 Polarization: 6.76 SS G_CDS: -6.62 Total: 0.14 kcal Atomic # 6 Polarization: 9.38 SS G_CDS: -0.69 Total: 8.70 kcal Atomic # 7 Polarization: -47.25 SS G_CDS: -0.42 Total: -47.67 kcal Atomic # 8 Polarization: -10.23 SS G_CDS: 0.09 Total: -10.14 kcal Atomic # 9 Polarization: -8.57 SS G_CDS: 0.11 Total: -8.46 kcal Atomic # 14 Polarization: 20.82 SS G_CDS: -5.03 Total: 15.79 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -29.08 -7.14 -36.22 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001040327684.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -133.214 kcal (2) G-P(sol) polarization free energy of solvation -29.081 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -162.296 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.139 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.221 kcal (6) G-S(sol) free energy of system = (1) + (5) -169.435 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds