Wall clock time and date at job start Tue Mar 31 2020 18:03:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09000 * 109.47055 * 2 1 4 4 C 1.50710 * 109.47007 * 240.00345 * 2 1 3 5 5 O 1.21276 * 119.99899 * 268.59754 * 4 2 1 6 6 N 1.34775 * 120.00050 * 88.59731 * 4 2 1 7 7 C 1.48213 * 127.05329 * 184.44074 * 6 4 2 8 8 C 1.55046 * 103.33582 * 219.01282 * 7 6 4 9 9 C 1.54154 * 102.73281 * 323.02115 * 8 7 6 10 10 C 1.47615 * 127.02626 * 4.48207 * 6 4 2 11 11 C 1.52494 * 110.05280 * 262.54267 * 9 8 7 12 12 C 1.53132 * 109.60615 * 178.25953 * 11 9 8 13 13 C 1.53193 * 109.28797 * 60.51607 * 12 11 9 14 14 N 1.46924 * 108.89129 * 304.93119 * 13 12 11 15 15 C 1.36938 * 120.68161 * 234.03821 * 14 13 12 16 16 H 1.07999 * 119.99775 * 24.46914 * 15 14 13 17 17 C 1.38810 * 120.00150 * 204.47521 * 15 14 13 18 18 N 1.31621 * 119.99947 * 19.81219 * 17 15 14 19 19 Si 1.86795 * 120.00130 * 199.80938 * 17 15 14 20 20 H 1.48501 * 109.46865 * 59.99954 * 19 17 15 21 21 H 1.48506 * 109.47432 * 180.02562 * 19 17 15 22 22 H 1.48499 * 109.47208 * 300.00391 * 19 17 15 23 23 C 1.47037 * 118.64338 * 54.01803 * 14 13 12 24 24 C 1.52997 * 109.47674 * 120.00205 * 2 1 3 25 25 F 1.39892 * 109.47274 * 180.02562 * 24 2 1 26 26 F 1.39898 * 109.46633 * 300.00224 * 24 2 1 27 27 F 1.39901 * 109.47073 * 59.99942 * 24 2 1 28 28 H 1.09000 * 109.46719 * 303.00357 * 1 2 3 29 29 H 1.08995 * 109.47349 * 63.00683 * 1 2 3 30 30 H 1.09003 * 109.46812 * 183.01050 * 1 2 3 31 31 H 1.09002 * 110.61916 * 100.55848 * 7 6 4 32 32 H 1.09000 * 110.79677 * 337.55023 * 7 6 4 33 33 H 1.09001 * 110.75409 * 204.71154 * 8 7 6 34 34 H 1.08998 * 110.75895 * 81.33331 * 8 7 6 35 35 H 1.09000 * 109.97307 * 35.26329 * 10 6 4 36 36 H 1.09002 * 109.97246 * 274.03190 * 10 6 4 37 37 H 1.08996 * 109.45162 * 298.29809 * 11 9 8 38 38 H 1.08996 * 109.44609 * 58.24832 * 11 9 8 39 39 H 1.08994 * 109.50267 * 180.46310 * 12 11 9 40 40 H 1.09005 * 109.50249 * 300.57487 * 12 11 9 41 41 H 1.08995 * 109.56377 * 64.75566 * 13 12 11 42 42 H 1.08995 * 109.56493 * 185.11254 * 13 12 11 43 43 H 0.96998 * 119.99779 * 179.97438 * 18 17 15 44 44 H 1.09002 * 109.58209 * 187.42538 * 23 14 13 45 45 H 1.08995 * 109.58589 * 67.01042 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2306 5 8 2.2587 -1.9013 -1.1934 6 7 2.2300 -0.0223 -2.3724 7 6 2.6287 -0.5730 -3.6894 8 6 3.6168 0.4891 -4.2369 9 6 2.9950 1.8136 -3.7519 10 6 2.0945 1.4347 -2.5671 11 6 2.1668 2.4419 -4.8676 12 6 1.5191 3.7339 -4.3615 13 6 2.6148 4.7168 -3.9371 14 7 3.4848 4.0623 -2.9505 15 6 3.7229 4.6441 -1.7339 16 1 3.0116 5.3447 -1.3220 17 6 4.8784 4.3335 -1.0303 18 7 5.9111 3.8123 -1.6581 19 14 4.9677 4.6555 0.8076 20 1 3.9073 3.8785 1.4982 21 1 6.2988 4.2403 1.3188 22 1 4.7683 6.1040 1.0667 23 6 4.0943 2.7696 -3.2959 24 6 2.0401 -0.7213 1.2492 25 9 3.4391 -0.7207 1.2494 26 9 1.5738 -0.0618 2.3914 27 9 1.5739 -2.0403 1.2491 28 1 -0.3633 0.5598 0.8619 29 1 -0.3634 0.4664 -0.9157 30 1 -0.3633 -1.0263 0.0540 31 1 1.7626 -0.6662 -4.3446 32 1 3.1257 -1.5359 -3.5718 33 1 3.6550 0.4561 -5.3257 34 1 4.6099 0.3493 -3.8099 35 1 2.4184 1.9619 -1.6697 36 1 1.0579 1.6855 -2.7922 37 1 2.8128 2.6680 -5.7159 38 1 1.3893 1.7445 -5.1792 39 1 0.9210 4.1772 -5.1577 40 1 0.8801 3.5102 -3.5072 41 1 3.2031 5.0058 -4.8080 42 1 2.1593 5.6014 -3.4922 43 1 6.7187 3.5956 -1.1664 44 1 4.5972 2.3574 -2.4211 45 1 4.8147 2.9090 -4.1020 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001040327684.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:03:10 Heat of formation + Delta-G solvation = -185.261729 kcal Electronic energy + Delta-G solvation = -31925.898278 eV Core-core repulsion = 27334.980163 eV Total energy + Delta-G solvation = -4590.918115 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.161 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -51.24828 -48.77584 -48.66481 -41.60563 -39.95379 -37.28576 -35.23169 -34.75279 -32.86600 -31.69205 -30.32233 -27.58462 -27.40649 -26.92660 -25.25575 -23.87716 -23.44776 -21.82268 -20.79976 -19.80586 -19.78946 -19.50198 -18.59207 -18.26297 -18.07188 -16.99652 -16.76845 -16.22182 -15.84225 -15.71263 -15.58533 -15.33597 -15.29163 -15.14132 -14.90985 -14.87602 -14.81585 -14.52801 -14.38621 -14.24166 -13.84505 -13.65531 -13.50180 -13.24132 -13.12031 -12.92159 -12.86800 -12.80890 -12.55574 -12.43657 -12.23214 -12.19782 -11.84688 -11.81374 -11.40879 -11.13531 -10.98112 -10.91658 -10.48760 -9.78278 -8.66477 -7.85689 -5.24152 1.15630 1.44309 1.48073 1.51996 1.52464 1.85459 2.51213 2.54868 2.85233 2.89749 3.28288 3.39012 3.57331 3.73616 3.77035 3.83217 3.89916 4.01244 4.28904 4.34340 4.40953 4.50750 4.56331 4.59154 4.64492 4.70682 4.82989 4.87020 4.97132 5.00435 5.03339 5.09649 5.16293 5.21169 5.26393 5.40934 5.43742 5.54796 5.64930 5.71595 5.81915 6.33849 6.40139 6.83371 7.17785 7.92298 8.41484 9.19746 Molecular weight = 334.16amu Principal moments of inertia in cm(-1) A = 0.010160 B = 0.005985 C = 0.004450 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2755.343468 B = 4677.288471 C = 6290.822773 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.160 4.160 3 H 0.137 0.863 4 C 0.538 3.462 5 O -0.566 6.566 6 N -0.611 5.611 7 C 0.109 3.891 8 C -0.119 4.119 9 C -0.086 4.086 10 C 0.122 3.878 11 C -0.089 4.089 12 C -0.126 4.126 13 C 0.136 3.864 14 N -0.606 5.606 15 C -0.247 4.247 16 H 0.072 0.928 17 C -0.047 4.047 18 N -0.932 5.932 19 Si 0.941 3.059 20 H -0.275 1.275 21 H -0.304 1.304 22 H -0.275 1.275 23 C 0.195 3.805 24 C 0.466 3.534 25 F -0.195 7.195 26 F -0.174 7.174 27 F -0.172 7.172 28 H 0.099 0.901 29 H 0.101 0.899 30 H 0.075 0.925 31 H 0.105 0.895 32 H 0.073 0.927 33 H 0.108 0.892 34 H 0.049 0.951 35 H 0.060 0.940 36 H 0.095 0.905 37 H 0.061 0.939 38 H 0.085 0.915 39 H 0.083 0.917 40 H 0.064 0.936 41 H 0.009 0.991 42 H 0.051 0.949 43 H 0.245 0.755 44 H 0.051 0.949 45 H -0.009 1.009 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.957 -6.428 -3.853 15.842 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.183 4.183 3 H 0.155 0.845 4 C 0.326 3.674 5 O -0.446 6.446 6 N -0.343 5.343 7 C -0.012 4.012 8 C -0.158 4.158 9 C -0.088 4.088 10 C 0.000 4.000 11 C -0.127 4.127 12 C -0.165 4.165 13 C 0.011 3.989 14 N -0.329 5.329 15 C -0.377 4.377 16 H 0.089 0.911 17 C -0.242 4.242 18 N -0.578 5.578 19 Si 0.771 3.229 20 H -0.201 1.201 21 H -0.231 1.231 22 H -0.201 1.201 23 C 0.069 3.931 24 C 0.411 3.589 25 F -0.177 7.177 26 F -0.156 7.156 27 F -0.154 7.154 28 H 0.118 0.882 29 H 0.120 0.880 30 H 0.094 0.906 31 H 0.123 0.877 32 H 0.091 0.909 33 H 0.126 0.874 34 H 0.068 0.932 35 H 0.079 0.921 36 H 0.113 0.887 37 H 0.079 0.921 38 H 0.104 0.896 39 H 0.102 0.898 40 H 0.083 0.917 41 H 0.027 0.973 42 H 0.070 0.930 43 H 0.054 0.946 44 H 0.069 0.931 45 H 0.010 0.990 Dipole moment (debyes) X Y Z Total from point charges -13.701 -7.116 -3.658 15.866 hybrid contribution 1.334 0.338 1.487 2.026 sum -12.367 -6.778 -2.171 14.269 Atomic orbital electron populations 1.21813 0.86063 1.04967 1.06545 1.22685 1.03844 1.02490 0.89238 0.84525 1.19572 0.77741 0.86419 0.83680 1.90746 1.53523 1.15956 1.84357 1.48900 1.66252 1.09714 1.09399 1.22662 0.98893 0.97330 0.82345 1.22711 0.97732 0.93031 1.02303 1.21625 0.96567 0.95369 0.95239 1.22278 1.00652 0.77800 0.99283 1.21394 0.98654 0.96849 0.95796 1.21963 0.97505 0.96011 1.01020 1.21114 0.91658 0.94975 0.91157 1.44359 1.55112 1.19281 1.14131 1.19445 1.00987 1.22782 0.94531 0.91066 1.25494 0.94832 1.02510 1.01396 1.70170 1.03096 1.49524 1.35051 0.85722 0.76276 0.78330 0.82610 1.20122 1.23120 1.20060 1.20543 0.90980 0.84522 0.97025 1.20117 0.75061 0.78028 0.85669 1.93187 1.31203 1.96471 1.96839 1.93186 1.88299 1.80678 1.53413 1.93197 1.88123 1.37327 1.96720 0.88188 0.88044 0.90599 0.87724 0.90886 0.87352 0.93198 0.92148 0.88697 0.92075 0.89617 0.89836 0.91732 0.97274 0.93012 0.94576 0.93056 0.99049 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.61 8.93 71.98 0.64 -1.97 16 2 C -0.16 -4.42 2.35 -11.54 -0.03 -4.45 16 3 H 0.14 3.82 6.64 -2.39 -0.02 3.80 16 4 C 0.54 17.26 6.69 87.66 0.59 17.84 16 5 O -0.57 -21.53 15.47 -3.02 -0.05 -21.57 16 6 N -0.61 -17.72 3.30 -809.45 -2.67 -20.39 16 7 C 0.11 2.68 7.11 86.75 0.62 3.30 16 8 C -0.12 -3.17 6.15 31.69 0.19 -2.97 16 9 C -0.09 -2.57 0.62 -51.88 -0.03 -2.61 16 10 C 0.12 3.50 5.30 86.36 0.46 3.95 16 11 C -0.09 -2.12 4.40 30.47 0.13 -1.98 16 12 C -0.13 -3.17 5.87 30.70 0.18 -2.99 16 13 C 0.14 4.82 6.50 86.36 0.56 5.38 16 14 N -0.61 -26.89 2.78 -699.86 -1.94 -28.83 16 15 C -0.25 -12.45 9.61 84.03 0.81 -11.64 16 16 H 0.07 3.48 7.89 -2.91 -0.02 3.45 16 17 C -0.05 -2.51 4.88 84.86 0.41 -2.09 16 18 N -0.93 -53.65 11.13 21.65 0.24 -53.41 16 19 Si 0.94 43.71 29.60 68.60 2.03 45.74 16 20 H -0.28 -12.28 7.11 99.48 0.71 -11.57 16 21 H -0.30 -14.76 7.11 99.48 0.71 -14.06 16 22 H -0.27 -12.31 7.11 99.48 0.71 -11.60 16 23 C 0.20 8.40 3.64 86.16 0.31 8.71 16 24 C 0.47 14.50 2.51 71.98 0.18 14.68 16 25 F -0.20 -7.21 17.02 44.97 0.77 -6.45 16 26 F -0.17 -4.98 16.85 44.97 0.76 -4.22 16 27 F -0.17 -5.52 15.35 44.97 0.69 -4.83 16 28 H 0.10 1.58 7.89 -2.39 -0.02 1.56 16 29 H 0.10 1.58 8.14 -2.39 -0.02 1.56 16 30 H 0.08 1.46 7.72 -2.39 -0.02 1.45 16 31 H 0.10 1.92 8.14 -2.39 -0.02 1.91 16 32 H 0.07 1.95 7.83 -2.39 -0.02 1.93 16 33 H 0.11 2.25 7.83 -2.39 -0.02 2.23 16 34 H 0.05 1.61 7.84 -2.39 -0.02 1.59 16 35 H 0.06 2.15 6.37 -2.39 -0.02 2.13 16 36 H 0.10 2.19 6.54 -2.39 -0.02 2.18 16 37 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16 38 H 0.09 1.50 8.14 -2.39 -0.02 1.48 16 39 H 0.08 1.65 8.14 -2.39 -0.02 1.63 16 40 H 0.06 1.58 6.65 -2.38 -0.02 1.57 16 41 H 0.01 0.34 8.14 -2.39 -0.02 0.32 16 42 H 0.05 1.82 7.92 -2.39 -0.02 1.80 16 43 H 0.25 14.08 8.31 -92.71 -0.77 13.31 16 44 H 0.05 2.65 5.91 -2.39 -0.01 2.63 16 45 H -0.01 -0.41 8.14 -2.39 -0.02 -0.43 16 Total: -1.00 -66.31 359.71 5.86 -60.45 By element: Atomic # 1 Polarization: 9.33 SS G_CDS: 1.00 Total: 10.33 kcal Atomic # 6 Polarization: 18.15 SS G_CDS: 5.03 Total: 23.18 kcal Atomic # 7 Polarization: -98.26 SS G_CDS: -4.37 Total: -102.63 kcal Atomic # 8 Polarization: -21.53 SS G_CDS: -0.05 Total: -21.57 kcal Atomic # 9 Polarization: -17.71 SS G_CDS: 2.21 Total: -15.50 kcal Atomic # 14 Polarization: 43.71 SS G_CDS: 2.03 Total: 45.74 kcal Total: -66.31 5.86 -60.45 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001040327684.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -124.807 kcal (2) G-P(sol) polarization free energy of solvation -66.312 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -191.119 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.857 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.455 kcal (6) G-S(sol) free energy of system = (1) + (5) -185.262 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds