Wall clock time and date at job start Tue Mar 31 2020 18:03:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09002 * 109.47234 * 2 1 4 4 C 1.50694 * 109.47285 * 119.99470 * 2 1 3 5 5 O 1.21290 * 119.99635 * 84.81341 * 4 2 1 6 6 N 1.34780 * 120.00446 * 264.81814 * 4 2 1 7 7 C 1.48154 * 127.02203 * 5.31746 * 6 4 2 8 8 C 1.55044 * 103.30873 * 140.96648 * 7 6 4 9 9 C 1.54168 * 102.72639 * 37.01272 * 8 7 6 10 10 C 1.47611 * 127.02427 * 185.30245 * 6 4 2 11 11 C 1.52494 * 110.01927 * 219.31463 * 9 8 7 12 12 C 1.53134 * 109.60533 * 298.40239 * 11 9 8 13 13 C 1.53189 * 109.29468 * 299.49996 * 12 11 9 14 14 N 1.46932 * 108.89123 * 55.06586 * 13 12 11 15 15 C 1.36942 * 120.67947 * 125.94403 * 14 13 12 16 16 H 1.07993 * 120.00543 * 331.68069 * 15 14 13 17 17 C 1.38812 * 119.99308 * 151.95026 * 15 14 13 18 18 N 1.31621 * 120.00404 * 344.22008 * 17 15 14 19 19 Si 1.86806 * 119.99722 * 164.22524 * 17 15 14 20 20 H 1.48497 * 109.47233 * 89.99804 * 19 17 15 21 21 H 1.48494 * 109.46917 * 210.00073 * 19 17 15 22 22 H 1.48500 * 109.46987 * 329.99802 * 19 17 15 23 23 C 1.47026 * 118.63512 * 306.22234 * 14 13 12 24 24 C 1.52995 * 109.47106 * 239.99949 * 2 1 3 25 25 F 1.39902 * 109.46958 * 299.99534 * 24 2 1 26 26 F 1.39902 * 109.47543 * 59.99940 * 24 2 1 27 27 F 1.39901 * 109.47063 * 180.02562 * 24 2 1 28 28 H 1.08998 * 109.46827 * 176.30245 * 1 2 3 29 29 H 1.08997 * 109.47162 * 296.30275 * 1 2 3 30 30 H 1.09001 * 109.47270 * 56.30026 * 1 2 3 31 31 H 1.08997 * 110.65664 * 259.42081 * 7 6 4 32 32 H 1.08999 * 110.64828 * 22.35132 * 7 6 4 33 33 H 1.08996 * 110.76226 * 278.69888 * 8 7 6 34 34 H 1.09005 * 110.75816 * 155.32278 * 8 7 6 35 35 H 1.08997 * 109.97841 * 85.98844 * 10 6 4 36 36 H 1.09006 * 110.00488 * 324.72930 * 10 6 4 37 37 H 1.08998 * 109.45157 * 178.36823 * 11 9 8 38 38 H 1.08994 * 109.42804 * 58.43068 * 11 9 8 39 39 H 1.09002 * 109.49927 * 179.55256 * 12 11 9 40 40 H 1.09002 * 109.49942 * 59.44089 * 12 11 9 41 41 H 1.09003 * 109.56607 * 295.24154 * 13 12 11 42 42 H 1.09003 * 109.56614 * 174.89059 * 13 12 11 43 43 H 0.96997 * 120.00166 * 180.02562 * 18 17 15 44 44 H 1.09005 * 109.58360 * 172.34020 * 23 14 13 45 45 H 1.09000 * 109.58371 * 292.75254 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7103 1.2305 5 8 2.1450 -1.9179 1.2300 6 7 2.3564 -0.0036 2.3315 7 6 2.1781 1.4520 2.5417 8 6 1.7278 1.5463 4.0223 9 6 2.5600 0.4404 4.7015 10 6 2.9612 -0.5220 3.5742 11 6 1.7141 -0.2843 5.7431 12 6 1.2752 0.7046 6.8268 13 6 2.5151 1.2914 7.5087 14 7 3.3872 1.8815 6.4839 15 6 3.8035 3.1822 6.5853 16 1 3.1909 3.9066 7.1013 17 6 5.0103 3.5706 6.0200 18 7 5.8938 2.6617 5.6653 19 14 5.3805 5.3834 5.7626 20 1 6.0551 5.9270 6.9686 21 1 6.2686 5.5447 4.5835 22 1 4.1118 6.1197 5.5310 23 6 3.7986 1.0487 5.3442 24 6 2.0400 -0.7212 -1.2492 25 9 1.5737 -2.0403 -1.2491 26 9 1.5737 -0.0618 -2.3915 27 9 3.4390 -0.7217 -1.2489 28 1 -0.3633 -1.0255 -0.0663 29 1 -0.3633 0.4554 0.9212 30 1 -0.3634 0.5702 -0.8550 31 1 3.1197 1.9803 2.3920 32 1 1.4084 1.8449 1.8775 33 1 0.6616 1.3400 4.1158 34 1 1.9712 2.5238 4.4387 35 1 4.0465 -0.5495 3.4769 36 1 2.5810 -1.5216 3.7852 37 1 2.3019 -1.0823 6.1966 38 1 0.8335 -0.7103 5.2624 39 1 0.6642 0.1866 7.5661 40 1 0.6951 1.5081 6.3729 41 1 3.0517 0.5009 8.0336 42 1 2.2117 2.0618 8.2176 43 1 6.7372 2.9332 5.2706 44 1 4.3234 1.6636 4.6130 45 1 4.4551 0.2514 5.6925 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001040327686.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:03:14 Heat of formation + Delta-G solvation = -170.192558 kcal Electronic energy + Delta-G solvation = -31097.993988 eV Core-core repulsion = 26507.729322 eV Total energy + Delta-G solvation = -4590.264667 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.161 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -50.21066 -47.74516 -47.59695 -40.37203 -38.65297 -35.87697 -34.22408 -33.13427 -31.25431 -30.04466 -29.27155 -26.76504 -26.00402 -25.41461 -23.43990 -22.66410 -22.25994 -20.69172 -19.59312 -18.77127 -18.52559 -18.17289 -17.31893 -16.95762 -16.55117 -15.81285 -15.25312 -14.93967 -14.62448 -14.53707 -14.23170 -14.09565 -14.08284 -13.87598 -13.80494 -13.75800 -13.50570 -13.38189 -13.07074 -12.88320 -12.79900 -12.39816 -12.35315 -12.11142 -12.00155 -11.72148 -11.61049 -11.18650 -11.06032 -10.99894 -10.73900 -10.46032 -10.22893 -10.12977 -9.95925 -9.88096 -9.61632 -9.45843 -8.60318 -8.55640 -6.73474 -5.86989 -3.30057 2.20030 2.59690 2.91085 3.30637 3.39073 3.39339 3.53408 3.86674 3.88590 4.39656 4.41827 4.58986 4.68099 4.87190 4.94744 5.15168 5.17995 5.27318 5.30950 5.46556 5.53175 5.58371 5.59854 5.67819 5.74254 5.95271 5.97241 6.04545 6.16804 6.22711 6.25415 6.38556 6.44806 6.57465 6.71297 6.78151 6.86822 6.95105 7.23822 7.50359 7.55003 7.71871 7.99512 8.36627 9.13178 9.76320 10.33990 11.21506 Molecular weight = 334.16amu Principal moments of inertia in cm(-1) A = 0.015195 B = 0.003623 C = 0.003217 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1842.236858 B = 7727.243221 C = 8702.111046 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.160 4.160 3 H 0.132 0.868 4 C 0.537 3.463 5 O -0.528 6.528 6 N -0.608 5.608 7 C 0.091 3.909 8 C -0.112 4.112 9 C -0.094 4.094 10 C 0.118 3.882 11 C -0.094 4.094 12 C -0.134 4.134 13 C 0.144 3.856 14 N -0.589 5.589 15 C -0.253 4.253 16 H 0.065 0.935 17 C 0.005 3.995 18 N -0.902 5.902 19 Si 0.898 3.102 20 H -0.287 1.287 21 H -0.290 1.290 22 H -0.279 1.279 23 C 0.187 3.813 24 C 0.470 3.530 25 F -0.166 7.166 26 F -0.181 7.181 27 F -0.179 7.179 28 H 0.078 0.922 29 H 0.084 0.916 30 H 0.081 0.919 31 H 0.082 0.918 32 H 0.073 0.927 33 H 0.061 0.939 34 H 0.102 0.898 35 H 0.073 0.927 36 H 0.073 0.927 37 H 0.056 0.944 38 H 0.046 0.954 39 H 0.049 0.951 40 H 0.059 0.941 41 H 0.017 0.983 42 H 0.052 0.948 43 H 0.254 0.746 44 H 0.091 0.909 45 H 0.019 0.981 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.212 -3.526 -10.143 15.524 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.183 4.183 3 H 0.150 0.850 4 C 0.322 3.678 5 O -0.405 6.405 6 N -0.340 5.340 7 C -0.031 4.031 8 C -0.150 4.150 9 C -0.096 4.096 10 C -0.005 4.005 11 C -0.132 4.132 12 C -0.173 4.173 13 C 0.017 3.983 14 N -0.311 5.311 15 C -0.382 4.382 16 H 0.083 0.917 17 C -0.193 4.193 18 N -0.546 5.546 19 Si 0.728 3.272 20 H -0.214 1.214 21 H -0.216 1.216 22 H -0.205 1.205 23 C 0.061 3.939 24 C 0.416 3.584 25 F -0.147 7.147 26 F -0.163 7.163 27 F -0.160 7.160 28 H 0.097 0.903 29 H 0.103 0.897 30 H 0.100 0.900 31 H 0.100 0.900 32 H 0.092 0.908 33 H 0.079 0.921 34 H 0.120 0.880 35 H 0.092 0.908 36 H 0.092 0.908 37 H 0.075 0.925 38 H 0.065 0.935 39 H 0.068 0.932 40 H 0.078 0.922 41 H 0.035 0.965 42 H 0.071 0.929 43 H 0.064 0.936 44 H 0.109 0.891 45 H 0.037 0.963 Dipole moment (debyes) X Y Z Total from point charges -10.970 -4.203 -10.300 15.623 hybrid contribution 0.482 0.914 -0.364 1.095 sum -10.488 -3.289 -10.664 15.315 Atomic orbital electron populations 1.21772 0.88980 1.04814 1.04687 1.22581 1.01626 1.02735 0.91325 0.85032 1.19240 0.78451 0.86984 0.83079 1.90791 1.53850 1.13146 1.82687 1.48813 1.60617 1.09986 1.14624 1.22829 1.01648 0.80107 0.98494 1.22681 0.98582 1.01521 0.92179 1.21794 0.99635 0.94348 0.93845 1.22194 0.98077 0.98135 0.82046 1.21381 0.98087 0.97542 0.96178 1.22035 0.99195 0.98411 0.97637 1.20921 0.90202 0.95871 0.91279 1.43997 1.56452 1.10309 1.20330 1.19145 1.00351 0.84576 1.34162 0.91701 1.25036 0.95031 0.97290 1.01984 1.70005 1.07176 1.31731 1.45677 0.86369 0.77903 0.85317 0.77618 1.21383 1.21573 1.20455 1.20663 0.89458 0.93458 0.90315 1.19852 0.75730 0.78202 0.84661 1.93236 1.88166 1.36681 1.96599 1.93181 1.88529 1.80897 1.53669 1.93219 1.29637 1.96426 1.96717 0.90341 0.89744 0.89985 0.89997 0.90814 0.92054 0.87981 0.90839 0.90845 0.92521 0.93527 0.93206 0.92228 0.96523 0.92918 0.93554 0.89125 0.96256 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.23 8.93 37.16 0.33 -0.90 16 2 C -0.16 -1.76 2.14 -91.78 -0.20 -1.95 16 3 H 0.13 1.16 6.96 -51.93 -0.36 0.79 16 4 C 0.54 7.90 6.62 -10.99 -0.07 7.82 16 5 O -0.53 -9.60 15.69 5.55 0.09 -9.52 16 6 N -0.61 -8.84 3.30 -169.85 -0.56 -9.40 16 7 C 0.09 1.18 6.61 -2.05 -0.01 1.17 16 8 C -0.11 -1.66 4.99 -25.04 -0.12 -1.78 16 9 C -0.09 -1.55 0.63 -154.26 -0.10 -1.65 16 10 C 0.12 1.90 6.30 -3.15 -0.02 1.88 16 11 C -0.09 -1.46 4.34 -26.92 -0.12 -1.58 16 12 C -0.13 -2.11 5.89 -26.56 -0.16 -2.27 16 13 C 0.14 2.78 6.50 -3.71 -0.02 2.76 16 14 N -0.59 -13.32 2.51 -172.81 -0.43 -13.76 16 15 C -0.25 -6.35 9.58 -15.06 -0.14 -6.49 16 16 H 0.07 1.61 7.88 -52.49 -0.41 1.20 16 17 C 0.01 0.14 4.95 -17.43 -0.09 0.05 16 18 N -0.90 -24.54 11.15 55.49 0.62 -23.92 16 19 Si 0.90 20.31 29.58 -169.99 -5.03 15.28 16 20 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 21 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 22 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 23 C 0.19 3.98 3.60 -4.15 -0.01 3.96 16 24 C 0.47 5.85 2.57 37.15 0.10 5.95 16 25 F -0.17 -2.34 15.33 2.25 0.03 -2.31 16 26 F -0.18 -2.00 16.87 2.25 0.04 -1.96 16 27 F -0.18 -2.53 17.02 2.25 0.04 -2.49 16 28 H 0.08 0.73 7.70 -51.93 -0.40 0.33 16 29 H 0.08 0.65 8.14 -51.93 -0.42 0.22 16 30 H 0.08 0.54 7.91 -51.93 -0.41 0.13 16 31 H 0.08 1.14 8.14 -51.93 -0.42 0.71 16 32 H 0.07 0.72 7.12 -51.93 -0.37 0.35 16 33 H 0.06 0.83 7.62 -51.93 -0.40 0.43 16 34 H 0.10 1.77 7.48 -51.93 -0.39 1.38 16 35 H 0.07 1.26 7.68 -51.93 -0.40 0.87 16 36 H 0.07 1.19 7.55 -51.93 -0.39 0.80 16 37 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 38 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 39 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 40 H 0.06 0.94 7.13 -51.93 -0.37 0.57 16 41 H 0.02 0.34 8.14 -51.93 -0.42 -0.09 16 42 H 0.05 1.01 7.93 -51.93 -0.41 0.59 16 43 H 0.25 6.78 8.31 -40.82 -0.34 6.44 16 44 H 0.09 2.16 6.08 -51.93 -0.32 1.84 16 45 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 LS Contribution 360.75 15.07 5.44 5.44 Total: -1.00 -29.12 360.75 -7.13 -36.25 By element: Atomic # 1 Polarization: 6.14 SS G_CDS: -6.72 Total: -0.58 kcal Atomic # 6 Polarization: 7.60 SS G_CDS: -0.64 Total: 6.96 kcal Atomic # 7 Polarization: -46.70 SS G_CDS: -0.38 Total: -47.07 kcal Atomic # 8 Polarization: -9.60 SS G_CDS: 0.09 Total: -9.52 kcal Atomic # 9 Polarization: -6.87 SS G_CDS: 0.11 Total: -6.76 kcal Atomic # 14 Polarization: 20.31 SS G_CDS: -5.03 Total: 15.28 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -29.12 -7.13 -36.25 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001040327686.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -133.940 kcal (2) G-P(sol) polarization free energy of solvation -29.122 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -163.062 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.131 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.253 kcal (6) G-S(sol) free energy of system = (1) + (5) -170.193 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds