Wall clock time and date at job start Tue Mar 31 2020 18:03:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09002 * 109.47234 * 2 1 4 4 C 1.50694 * 109.47285 * 119.99470 * 2 1 3 5 5 O 1.21290 * 119.99635 * 84.81341 * 4 2 1 6 6 N 1.34780 * 120.00446 * 264.81814 * 4 2 1 7 7 C 1.48154 * 127.02203 * 5.31746 * 6 4 2 8 8 C 1.55044 * 103.30873 * 140.96648 * 7 6 4 9 9 C 1.54168 * 102.72639 * 37.01272 * 8 7 6 10 10 C 1.47611 * 127.02427 * 185.30245 * 6 4 2 11 11 C 1.52494 * 110.01927 * 219.31463 * 9 8 7 12 12 C 1.53134 * 109.60533 * 298.40239 * 11 9 8 13 13 C 1.53189 * 109.29468 * 299.49996 * 12 11 9 14 14 N 1.46932 * 108.89123 * 55.06586 * 13 12 11 15 15 C 1.36942 * 120.67947 * 125.94403 * 14 13 12 16 16 H 1.07993 * 120.00543 * 331.68069 * 15 14 13 17 17 C 1.38812 * 119.99308 * 151.95026 * 15 14 13 18 18 N 1.31621 * 120.00404 * 344.22008 * 17 15 14 19 19 Si 1.86806 * 119.99722 * 164.22524 * 17 15 14 20 20 H 1.48497 * 109.47233 * 89.99804 * 19 17 15 21 21 H 1.48494 * 109.46917 * 210.00073 * 19 17 15 22 22 H 1.48500 * 109.46987 * 329.99802 * 19 17 15 23 23 C 1.47026 * 118.63512 * 306.22234 * 14 13 12 24 24 C 1.52995 * 109.47106 * 239.99949 * 2 1 3 25 25 F 1.39902 * 109.46958 * 299.99534 * 24 2 1 26 26 F 1.39902 * 109.47543 * 59.99940 * 24 2 1 27 27 F 1.39901 * 109.47063 * 180.02562 * 24 2 1 28 28 H 1.08998 * 109.46827 * 176.30245 * 1 2 3 29 29 H 1.08997 * 109.47162 * 296.30275 * 1 2 3 30 30 H 1.09001 * 109.47270 * 56.30026 * 1 2 3 31 31 H 1.08997 * 110.65664 * 259.42081 * 7 6 4 32 32 H 1.08999 * 110.64828 * 22.35132 * 7 6 4 33 33 H 1.08996 * 110.76226 * 278.69888 * 8 7 6 34 34 H 1.09005 * 110.75816 * 155.32278 * 8 7 6 35 35 H 1.08997 * 109.97841 * 85.98844 * 10 6 4 36 36 H 1.09006 * 110.00488 * 324.72930 * 10 6 4 37 37 H 1.08998 * 109.45157 * 178.36823 * 11 9 8 38 38 H 1.08994 * 109.42804 * 58.43068 * 11 9 8 39 39 H 1.09002 * 109.49927 * 179.55256 * 12 11 9 40 40 H 1.09002 * 109.49942 * 59.44089 * 12 11 9 41 41 H 1.09003 * 109.56607 * 295.24154 * 13 12 11 42 42 H 1.09003 * 109.56614 * 174.89059 * 13 12 11 43 43 H 0.96997 * 120.00166 * 180.02562 * 18 17 15 44 44 H 1.09005 * 109.58360 * 172.34020 * 23 14 13 45 45 H 1.09000 * 109.58371 * 292.75254 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7103 1.2305 5 8 2.1450 -1.9179 1.2300 6 7 2.3564 -0.0036 2.3315 7 6 2.1781 1.4520 2.5417 8 6 1.7278 1.5463 4.0223 9 6 2.5600 0.4404 4.7015 10 6 2.9612 -0.5220 3.5742 11 6 1.7141 -0.2843 5.7431 12 6 1.2752 0.7046 6.8268 13 6 2.5151 1.2914 7.5087 14 7 3.3872 1.8815 6.4839 15 6 3.8035 3.1822 6.5853 16 1 3.1909 3.9066 7.1013 17 6 5.0103 3.5706 6.0200 18 7 5.8938 2.6617 5.6653 19 14 5.3805 5.3834 5.7626 20 1 6.0551 5.9270 6.9686 21 1 6.2686 5.5447 4.5835 22 1 4.1118 6.1197 5.5310 23 6 3.7986 1.0487 5.3442 24 6 2.0400 -0.7212 -1.2492 25 9 1.5737 -2.0403 -1.2491 26 9 1.5737 -0.0618 -2.3915 27 9 3.4390 -0.7217 -1.2489 28 1 -0.3633 -1.0255 -0.0663 29 1 -0.3633 0.4554 0.9212 30 1 -0.3634 0.5702 -0.8550 31 1 3.1197 1.9803 2.3920 32 1 1.4084 1.8449 1.8775 33 1 0.6616 1.3400 4.1158 34 1 1.9712 2.5238 4.4387 35 1 4.0465 -0.5495 3.4769 36 1 2.5810 -1.5216 3.7852 37 1 2.3019 -1.0823 6.1966 38 1 0.8335 -0.7103 5.2624 39 1 0.6642 0.1866 7.5661 40 1 0.6951 1.5081 6.3729 41 1 3.0517 0.5009 8.0336 42 1 2.2117 2.0618 8.2176 43 1 6.7372 2.9332 5.2706 44 1 4.3234 1.6636 4.6130 45 1 4.4551 0.2514 5.6925 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001040327686.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:03:13 Heat of formation + Delta-G solvation = -185.851644 kcal Electronic energy + Delta-G solvation = -31098.673017 eV Core-core repulsion = 26507.729322 eV Total energy + Delta-G solvation = -4590.943695 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.161 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -51.19409 -48.71799 -48.61781 -41.60966 -39.98044 -37.31862 -35.23718 -34.73769 -32.70196 -31.70350 -30.50349 -27.63198 -27.37127 -27.13864 -24.62381 -23.92956 -23.67926 -22.12988 -20.70211 -19.85522 -19.62809 -19.42111 -18.58064 -18.24520 -17.95615 -17.03682 -16.65401 -16.35759 -15.80241 -15.68861 -15.55255 -15.38620 -15.19885 -15.08656 -14.97735 -14.83407 -14.75618 -14.53932 -14.25486 -14.22365 -14.04324 -13.61071 -13.52437 -13.31622 -13.04712 -12.96851 -12.89045 -12.63774 -12.53580 -12.42904 -12.36536 -12.11274 -11.81949 -11.63349 -11.32088 -11.22899 -11.03191 -10.97210 -10.48857 -9.83171 -8.60910 -7.82307 -5.27637 1.13452 1.49602 1.52670 1.54591 1.60863 1.86042 2.55240 2.60211 2.88091 2.94341 3.31643 3.41115 3.61288 3.72923 3.77091 3.87339 3.87993 3.98593 4.27708 4.32909 4.38191 4.49955 4.59248 4.60855 4.62257 4.66505 4.75753 4.80338 4.90738 4.94745 5.04859 5.08516 5.15623 5.21687 5.30941 5.36613 5.43809 5.52466 5.65340 5.71290 5.79371 6.37395 6.44111 6.84052 7.20277 7.91343 8.44254 9.23914 Molecular weight = 334.16amu Principal moments of inertia in cm(-1) A = 0.015195 B = 0.003623 C = 0.003217 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1842.236858 B = 7727.243221 C = 8702.111046 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.151 4.151 3 H 0.160 0.840 4 C 0.534 3.466 5 O -0.568 6.568 6 N -0.606 5.606 7 C 0.094 3.906 8 C -0.104 4.104 9 C -0.086 4.086 10 C 0.122 3.878 11 C -0.091 4.091 12 C -0.120 4.120 13 C 0.137 3.863 14 N -0.603 5.603 15 C -0.253 4.253 16 H 0.068 0.932 17 C -0.044 4.044 18 N -0.936 5.936 19 Si 0.958 3.042 20 H -0.292 1.292 21 H -0.296 1.296 22 H -0.264 1.264 23 C 0.202 3.798 24 C 0.466 3.534 25 F -0.179 7.179 26 F -0.171 7.171 27 F -0.193 7.193 28 H 0.066 0.934 29 H 0.100 0.900 30 H 0.107 0.893 31 H 0.068 0.932 32 H 0.120 0.880 33 H 0.087 0.913 34 H 0.078 0.922 35 H 0.050 0.950 36 H 0.072 0.928 37 H 0.048 0.952 38 H 0.071 0.929 39 H 0.078 0.922 40 H 0.066 0.934 41 H 0.005 0.995 42 H 0.053 0.947 43 H 0.247 0.753 44 H 0.060 0.940 45 H -0.018 1.018 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.174 -2.333 -11.034 18.114 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.173 4.173 3 H 0.178 0.822 4 C 0.322 3.678 5 O -0.448 6.448 6 N -0.338 5.338 7 C -0.027 4.027 8 C -0.142 4.142 9 C -0.088 4.088 10 C -0.001 4.001 11 C -0.129 4.129 12 C -0.159 4.159 13 C 0.012 3.988 14 N -0.326 5.326 15 C -0.383 4.383 16 H 0.086 0.914 17 C -0.240 4.240 18 N -0.582 5.582 19 Si 0.787 3.213 20 H -0.219 1.219 21 H -0.223 1.223 22 H -0.189 1.189 23 C 0.075 3.925 24 C 0.411 3.589 25 F -0.160 7.160 26 F -0.152 7.152 27 F -0.175 7.175 28 H 0.085 0.915 29 H 0.119 0.881 30 H 0.126 0.874 31 H 0.087 0.913 32 H 0.138 0.862 33 H 0.105 0.895 34 H 0.097 0.903 35 H 0.069 0.931 36 H 0.091 0.909 37 H 0.067 0.933 38 H 0.090 0.910 39 H 0.096 0.904 40 H 0.085 0.915 41 H 0.023 0.977 42 H 0.072 0.928 43 H 0.057 0.943 44 H 0.079 0.921 45 H 0.000 1.000 Dipole moment (debyes) X Y Z Total from point charges -13.972 -2.995 -11.185 18.146 hybrid contribution 1.441 0.494 -0.022 1.523 sum -12.531 -2.501 -11.207 16.997 Atomic orbital electron populations 1.21867 0.86559 1.04824 1.06725 1.22665 1.03405 1.03089 0.88182 0.82219 1.19888 0.77504 0.86662 0.83781 1.90774 1.55462 1.15116 1.83404 1.48830 1.60189 1.10619 1.14131 1.22903 1.02509 0.78972 0.98315 1.22579 0.99538 0.99215 0.92893 1.21549 0.97878 0.95177 0.94206 1.21968 0.96966 0.98098 0.83102 1.21373 0.98556 0.97167 0.95813 1.21895 0.97389 0.98618 0.97982 1.21089 0.91137 0.95590 0.91017 1.44237 1.56793 1.09953 1.21633 1.19450 1.00056 0.85809 1.33016 0.91428 1.25689 0.95082 1.00634 1.02556 1.70176 1.07437 1.33396 1.47226 0.85416 0.77889 0.81271 0.76723 1.21943 1.22265 1.18858 1.20351 0.90963 0.91690 0.89455 1.20124 0.75105 0.77925 0.85705 1.93211 1.88224 1.37859 1.96720 1.93199 1.88277 1.80512 1.53194 1.93193 1.30963 1.96462 1.96843 0.91511 0.88103 0.87422 0.91325 0.86218 0.89467 0.90328 0.93136 0.90929 0.93349 0.91025 0.90389 0.91496 0.97696 0.92827 0.94340 0.92118 1.00025 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.85 8.93 71.98 0.64 -1.21 16 2 C -0.15 -2.88 2.14 -11.54 -0.02 -2.90 16 3 H 0.16 2.13 6.96 -2.39 -0.02 2.11 16 4 C 0.53 14.82 6.62 87.65 0.58 15.40 16 5 O -0.57 -20.41 15.69 -3.06 -0.05 -20.46 16 6 N -0.61 -16.66 3.30 -809.65 -2.67 -19.33 16 7 C 0.09 2.20 6.61 86.76 0.57 2.77 16 8 C -0.10 -2.86 4.99 31.69 0.16 -2.70 16 9 C -0.09 -2.80 0.63 -52.02 -0.03 -2.83 16 10 C 0.12 3.94 6.30 86.35 0.54 4.48 16 11 C -0.09 -2.66 4.34 30.47 0.13 -2.53 16 12 C -0.12 -3.48 5.89 30.70 0.18 -3.30 16 13 C 0.14 5.24 6.50 86.36 0.56 5.80 16 14 N -0.60 -27.69 2.51 -700.66 -1.76 -29.45 16 15 C -0.25 -12.81 9.58 84.03 0.81 -12.01 16 16 H 0.07 3.33 7.88 -2.91 -0.02 3.31 16 17 C -0.04 -2.32 4.95 84.86 0.42 -1.90 16 18 N -0.94 -52.94 11.15 21.65 0.24 -52.70 16 19 Si 0.96 42.16 29.58 68.60 2.03 44.19 16 20 H -0.29 -13.01 7.11 99.48 0.71 -12.31 16 21 H -0.30 -13.23 7.11 99.48 0.71 -12.52 16 22 H -0.26 -10.85 7.11 99.48 0.71 -10.14 16 23 C 0.20 8.89 3.60 86.02 0.31 9.20 16 24 C 0.47 10.79 2.57 71.98 0.19 10.97 16 25 F -0.18 -4.91 15.33 44.97 0.69 -4.22 16 26 F -0.17 -3.34 16.87 44.97 0.76 -2.58 16 27 F -0.19 -5.32 17.02 44.97 0.77 -4.56 16 28 H 0.07 1.06 7.70 -2.39 -0.02 1.04 16 29 H 0.10 1.02 8.14 -2.39 -0.02 1.00 16 30 H 0.11 0.89 7.91 -2.39 -0.02 0.87 16 31 H 0.07 1.82 8.14 -2.39 -0.02 1.80 16 32 H 0.12 1.72 7.12 -2.39 -0.02 1.70 16 33 H 0.09 1.98 7.62 -2.39 -0.02 1.96 16 34 H 0.08 2.60 7.48 -2.38 -0.02 2.58 16 35 H 0.05 1.85 7.68 -2.39 -0.02 1.83 16 36 H 0.07 2.35 7.55 -2.38 -0.02 2.34 16 37 H 0.05 1.49 8.14 -2.39 -0.02 1.47 16 38 H 0.07 1.79 8.14 -2.39 -0.02 1.77 16 39 H 0.08 1.87 8.14 -2.39 -0.02 1.85 16 40 H 0.07 1.88 7.13 -2.39 -0.02 1.87 16 41 H 0.01 0.20 8.14 -2.39 -0.02 0.18 16 42 H 0.05 2.00 7.93 -2.39 -0.02 1.99 16 43 H 0.25 13.75 8.31 -92.71 -0.77 12.98 16 44 H 0.06 3.04 6.08 -2.38 -0.01 3.02 16 45 H -0.02 -0.92 8.14 -2.39 -0.02 -0.94 16 Total: -1.00 -66.13 360.75 6.04 -60.09 By element: Atomic # 1 Polarization: 8.77 SS G_CDS: 1.00 Total: 9.77 kcal Atomic # 6 Polarization: 14.21 SS G_CDS: 5.04 Total: 19.24 kcal Atomic # 7 Polarization: -97.28 SS G_CDS: -4.19 Total: -101.47 kcal Atomic # 8 Polarization: -20.41 SS G_CDS: -0.05 Total: -20.46 kcal Atomic # 9 Polarization: -13.57 SS G_CDS: 2.21 Total: -11.36 kcal Atomic # 14 Polarization: 42.16 SS G_CDS: 2.03 Total: 44.19 kcal Total: -66.13 6.04 -60.09 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001040327686.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -125.765 kcal (2) G-P(sol) polarization free energy of solvation -66.125 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -191.890 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.038 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.087 kcal (6) G-S(sol) free energy of system = (1) + (5) -185.852 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds