Wall clock time and date at job start Tue Mar 31 2020 18:03:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 109.47149 * 2 1 4 4 C 1.50696 * 109.47766 * 120.00162 * 2 1 3 5 5 O 1.21275 * 120.00443 * 84.97079 * 4 2 1 6 6 N 1.34779 * 119.99702 * 265.25475 * 4 2 1 7 7 C 1.47478 * 125.66577 * 4.32822 * 6 4 2 8 8 C 1.55243 * 104.79430 * 155.93419 * 7 6 4 9 9 C 1.54516 * 101.43727 * 36.66649 * 8 7 6 10 10 C 1.47176 * 125.65816 * 184.64266 * 6 4 2 11 11 C 1.52271 * 110.20460 * 83.42525 * 9 8 7 12 12 C 1.53313 * 109.41813 * 182.19759 * 11 9 8 13 13 N 1.46925 * 108.71094 * 306.49149 * 12 11 9 14 14 C 1.36938 * 120.56525 * 234.21376 * 13 12 11 15 15 H 1.08007 * 119.99748 * 31.84311 * 14 13 12 16 16 C 1.38809 * 120.00117 * 211.83966 * 14 13 12 17 17 N 1.31617 * 119.99637 * 10.32571 * 16 14 13 18 18 Si 1.86795 * 120.00084 * 190.32836 * 16 14 13 19 19 H 1.48501 * 109.47308 * 60.00020 * 18 16 14 20 20 H 1.48499 * 109.47434 * 179.97438 * 18 16 14 21 21 H 1.48505 * 109.47279 * 300.00142 * 18 16 14 22 22 C 1.46936 * 118.86981 * 54.23314 * 13 12 11 23 23 C 1.52281 * 110.20626 * 206.61334 * 9 8 7 24 24 C 1.53004 * 109.47117 * 240.00532 * 2 1 3 25 25 F 1.39901 * 109.46488 * 299.99585 * 24 2 1 26 26 F 1.39893 * 109.47378 * 59.99377 * 24 2 1 27 27 F 1.39894 * 109.47333 * 180.02562 * 24 2 1 28 28 H 1.09004 * 109.46804 * 184.93006 * 1 2 3 29 29 H 1.09002 * 109.47281 * 304.91807 * 1 2 3 30 30 H 1.08991 * 109.47744 * 64.92655 * 1 2 3 31 31 H 1.09005 * 110.35843 * 274.88253 * 7 6 4 32 32 H 1.09003 * 110.35251 * 37.16620 * 7 6 4 33 33 H 1.08998 * 111.20097 * 278.57379 * 8 7 6 34 34 H 1.09001 * 110.91518 * 154.63830 * 8 7 6 35 35 H 1.08996 * 109.90708 * 300.83044 * 10 6 4 36 36 H 1.08995 * 109.91141 * 61.91132 * 10 6 4 37 37 H 1.09002 * 109.48011 * 302.18086 * 11 9 8 38 38 H 1.08998 * 109.48210 * 62.20983 * 11 9 8 39 39 H 1.09004 * 109.59785 * 186.72157 * 12 11 9 40 40 H 1.08995 * 109.59736 * 66.25799 * 12 11 9 41 41 H 0.97004 * 119.99861 * 179.97438 * 17 16 14 42 42 H 1.09006 * 109.59443 * 185.99422 * 22 13 12 43 43 H 1.08993 * 109.72803 * 65.60225 * 22 13 12 44 44 H 1.09004 * 109.47827 * 297.77448 * 23 9 8 45 45 H 1.08998 * 109.47947 * 57.79532 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0325 -0.7104 1.2304 5 8 2.1479 -1.9176 1.2290 6 7 2.3482 -0.0046 2.3343 7 6 2.1662 1.4487 2.5069 8 6 2.0719 1.6568 4.0425 9 6 3.0859 0.6102 4.5563 10 6 2.9378 -0.5552 3.5652 11 6 4.4978 1.1786 4.5093 12 6 5.4938 0.1081 4.9704 13 7 5.0683 -0.3976 6.2826 14 6 5.9324 -0.3913 7.3449 15 1 6.6811 0.3827 7.4274 16 6 5.8460 -1.3797 8.3157 17 7 5.0787 -2.4307 8.1183 18 14 6.8185 -1.2180 9.9023 19 1 6.4056 0.0192 10.6122 20 1 6.5543 -2.3959 10.7671 21 1 8.2685 -1.1485 9.5892 22 6 3.6999 -0.9107 6.4355 23 6 2.7156 0.1666 5.9652 24 6 2.0400 -0.7211 -1.2493 25 9 1.5736 -2.0402 -1.2493 26 9 1.5736 -0.0617 -2.3915 27 9 3.4389 -0.7217 -1.2491 28 1 -0.3633 -1.0239 0.0883 29 1 -0.3634 0.5882 0.8427 30 1 -0.3634 0.4355 -0.9307 31 1 3.0214 1.9889 2.1006 32 1 1.2457 1.7757 2.0232 33 1 1.0682 1.4411 4.4086 34 1 2.3782 2.6659 4.3179 35 1 2.2797 -1.3168 3.9835 36 1 3.9145 -0.9875 3.3478 37 1 4.7345 1.4799 3.4889 38 1 4.5633 2.0442 5.1685 39 1 6.4888 0.5456 5.0522 40 1 5.5099 -0.7104 4.2508 41 1 5.0186 -3.1216 8.7965 42 1 3.5123 -1.1450 7.4834 43 1 3.5743 -1.8094 5.8317 44 1 2.7627 1.0216 6.6397 45 1 1.7043 -0.2402 5.9642 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001040802815.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:03:22 Heat of formation + Delta-G solvation = -170.262962 kcal Electronic energy + Delta-G solvation = -30797.597832 eV Core-core repulsion = 26207.330113 eV Total energy + Delta-G solvation = -4590.267719 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.161 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -50.27474 -47.81659 -47.64924 -40.60794 -38.75291 -35.95113 -34.32246 -33.02622 -31.14734 -30.16549 -29.25042 -27.03816 -26.69237 -24.96133 -23.36153 -22.77761 -22.20777 -20.74713 -19.81304 -18.82100 -18.54465 -18.28061 -17.47611 -17.11908 -16.44203 -16.06625 -15.26551 -14.90397 -14.79694 -14.58680 -14.28604 -14.16757 -14.15170 -13.89400 -13.86032 -13.80504 -13.54124 -13.27840 -13.15871 -12.94778 -12.89171 -12.74639 -12.31871 -12.27460 -12.06424 -11.70278 -11.69256 -11.42241 -11.21462 -10.92818 -10.74779 -10.49480 -10.26913 -10.24686 -10.00037 -9.86525 -9.57255 -9.41529 -8.68990 -8.47532 -6.60728 -5.78507 -3.27324 2.11834 2.50649 2.82382 3.37336 3.43033 3.43508 3.45981 3.77353 3.78647 4.28815 4.47962 4.49580 4.52120 4.58932 4.75621 4.90581 5.06881 5.16362 5.23677 5.26016 5.36123 5.41468 5.58984 5.61209 5.66437 5.84720 5.89172 6.03593 6.06084 6.09584 6.16459 6.29141 6.46854 6.57283 6.60896 6.71035 6.80744 6.95681 7.34277 7.37052 7.68629 7.78095 7.91520 8.47895 9.22225 9.83424 10.41625 11.29232 Molecular weight = 334.16amu Principal moments of inertia in cm(-1) A = 0.024450 B = 0.002840 C = 0.002757 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1144.922633 B = 9858.037925 C =10153.492017 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.159 4.159 3 H 0.130 0.870 4 C 0.531 3.469 5 O -0.517 6.517 6 N -0.608 5.608 7 C 0.093 3.907 8 C -0.126 4.126 9 C -0.055 4.055 10 C 0.118 3.882 11 C -0.119 4.119 12 C 0.142 3.858 13 N -0.590 5.590 14 C -0.255 4.255 15 H 0.063 0.937 16 C 0.005 3.995 17 N -0.904 5.904 18 Si 0.904 3.096 19 H -0.284 1.284 20 H -0.290 1.290 21 H -0.283 1.283 22 C 0.170 3.830 23 C -0.127 4.127 24 C 0.470 3.530 25 F -0.164 7.164 26 F -0.182 7.182 27 F -0.178 7.178 28 H 0.079 0.921 29 H 0.083 0.917 30 H 0.082 0.918 31 H 0.073 0.927 32 H 0.073 0.927 33 H 0.075 0.925 34 H 0.084 0.916 35 H 0.072 0.928 36 H 0.078 0.922 37 H 0.050 0.950 38 H 0.063 0.937 39 H 0.054 0.946 40 H 0.019 0.981 41 H 0.255 0.745 42 H 0.089 0.911 43 H 0.019 0.981 44 H 0.061 0.939 45 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.924 10.559 -16.203 22.212 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.182 4.182 3 H 0.148 0.852 4 C 0.317 3.683 5 O -0.392 6.392 6 N -0.342 5.342 7 C -0.029 4.029 8 C -0.164 4.164 9 C -0.056 4.056 10 C -0.003 4.003 11 C -0.158 4.158 12 C 0.016 3.984 13 N -0.313 5.313 14 C -0.385 4.385 15 H 0.081 0.919 16 C -0.193 4.193 17 N -0.548 5.548 18 Si 0.734 3.266 19 H -0.210 1.210 20 H -0.216 1.216 21 H -0.209 1.209 22 C 0.044 3.956 23 C -0.166 4.166 24 C 0.415 3.585 25 F -0.145 7.145 26 F -0.163 7.163 27 F -0.160 7.160 28 H 0.098 0.902 29 H 0.102 0.898 30 H 0.100 0.900 31 H 0.091 0.909 32 H 0.091 0.909 33 H 0.094 0.906 34 H 0.103 0.897 35 H 0.091 0.909 36 H 0.097 0.903 37 H 0.068 0.932 38 H 0.082 0.918 39 H 0.073 0.927 40 H 0.036 0.964 41 H 0.065 0.935 42 H 0.107 0.893 43 H 0.037 0.963 44 H 0.079 0.921 45 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -10.870 9.667 -16.168 21.749 hybrid contribution 0.615 0.048 0.582 0.848 sum -10.255 9.715 -15.586 21.035 Atomic orbital electron populations 1.21779 0.88949 1.05041 1.04554 1.22585 1.01641 1.02529 0.91421 0.85202 1.19300 0.78728 0.87151 0.83139 1.90830 1.52730 1.13097 1.82591 1.48543 1.61719 1.09177 1.14720 1.22542 1.01132 0.80933 0.98330 1.22928 1.00338 1.00335 0.92783 1.20988 0.95623 0.93300 0.95673 1.22220 0.99013 0.96647 0.82397 1.21930 0.94334 0.99903 0.99671 1.20974 0.95335 0.93667 0.88419 1.43973 1.09103 1.73197 1.05023 1.19121 1.12878 1.06318 1.00170 0.91937 1.25176 0.99199 0.94857 1.00115 1.69958 1.41514 1.09115 1.34187 0.86349 0.79973 0.76940 0.83314 1.21014 1.21615 1.20878 1.20837 0.82066 0.90931 1.01795 1.22128 0.99440 1.01578 0.93468 1.19847 0.75750 0.78303 0.84602 1.93250 1.88142 1.36573 1.96583 1.93176 1.88520 1.80902 1.53698 1.93218 1.29623 1.96430 1.96710 0.90215 0.89803 0.89958 0.90908 0.90902 0.90593 0.89743 0.90946 0.90332 0.93152 0.91807 0.92724 0.96370 0.93511 0.89251 0.96284 0.92068 0.93095 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.06 8.93 37.16 0.33 -0.73 16 2 C -0.16 -1.54 2.15 -91.77 -0.20 -1.74 16 3 H 0.13 0.88 7.12 -51.93 -0.37 0.51 16 4 C 0.53 7.37 6.58 -10.99 -0.07 7.30 16 5 O -0.52 -9.44 15.71 5.56 0.09 -9.35 16 6 N -0.61 -7.94 3.33 -170.53 -0.57 -8.51 16 7 C 0.09 0.87 5.86 -2.32 -0.01 0.85 16 8 C -0.13 -1.33 6.00 -24.75 -0.15 -1.48 16 9 C -0.06 -0.81 0.53 -154.09 -0.08 -0.89 16 10 C 0.12 1.88 5.06 -3.31 -0.02 1.87 16 11 C -0.12 -1.86 4.78 -26.94 -0.13 -1.99 16 12 C 0.14 2.87 6.22 -3.65 -0.02 2.85 16 13 N -0.59 -14.28 2.97 -172.16 -0.51 -14.79 16 14 C -0.26 -6.85 9.57 -15.06 -0.14 -6.99 16 15 H 0.06 1.65 7.85 -52.48 -0.41 1.24 16 16 C 0.01 0.15 5.05 -17.43 -0.09 0.06 16 17 N -0.90 -25.94 11.05 55.49 0.61 -25.32 16 18 Si 0.90 21.43 29.57 -169.99 -5.03 16.41 16 19 H -0.28 -6.62 7.11 56.52 0.40 -6.21 16 20 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 21 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 22 C 0.17 3.87 4.99 -3.64 -0.02 3.85 16 23 C -0.13 -2.20 4.71 -26.94 -0.13 -2.33 16 24 C 0.47 5.44 2.57 37.16 0.10 5.54 16 25 F -0.16 -2.27 15.48 2.25 0.03 -2.23 16 26 F -0.18 -1.83 16.71 2.25 0.04 -1.79 16 27 F -0.18 -2.37 17.02 2.25 0.04 -2.33 16 28 H 0.08 0.70 7.94 -51.93 -0.41 0.28 16 29 H 0.08 0.48 7.85 -51.93 -0.41 0.08 16 30 H 0.08 0.45 7.67 -51.93 -0.40 0.06 16 31 H 0.07 0.61 7.74 -51.93 -0.40 0.21 16 32 H 0.07 0.47 7.36 -51.93 -0.38 0.09 16 33 H 0.08 0.77 8.01 -51.93 -0.42 0.36 16 34 H 0.08 0.79 8.01 -51.93 -0.42 0.37 16 35 H 0.07 1.26 7.59 -51.93 -0.39 0.87 16 36 H 0.08 1.44 6.08 -51.93 -0.32 1.12 16 37 H 0.05 0.69 7.47 -51.93 -0.39 0.30 16 38 H 0.06 1.01 8.14 -51.93 -0.42 0.58 16 39 H 0.05 1.09 7.93 -51.93 -0.41 0.68 16 40 H 0.02 0.39 6.53 -51.93 -0.34 0.05 16 41 H 0.25 7.12 8.31 -40.82 -0.34 6.78 16 42 H 0.09 2.32 6.09 -51.93 -0.32 2.01 16 43 H 0.02 0.47 7.47 -51.93 -0.39 0.08 16 44 H 0.06 1.08 8.14 -51.93 -0.42 0.65 16 45 H 0.05 0.81 8.10 -51.93 -0.42 0.39 16 LS Contribution 357.57 15.07 5.39 5.39 Total: -1.00 -31.56 357.57 -7.11 -38.66 By element: Atomic # 1 Polarization: 4.27 SS G_CDS: -6.57 Total: -2.30 kcal Atomic # 6 Polarization: 6.79 SS G_CDS: -0.63 Total: 6.16 kcal Atomic # 7 Polarization: -48.15 SS G_CDS: -0.47 Total: -48.62 kcal Atomic # 8 Polarization: -9.44 SS G_CDS: 0.09 Total: -9.35 kcal Atomic # 9 Polarization: -6.46 SS G_CDS: 0.11 Total: -6.35 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.03 Total: 16.41 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -31.56 -7.11 -38.66 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001040802815.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -131.598 kcal (2) G-P(sol) polarization free energy of solvation -31.558 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -163.156 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.107 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.665 kcal (6) G-S(sol) free energy of system = (1) + (5) -170.263 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds