Wall clock time and date at job start Tue Mar 31 2020 18:03:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 109.47149 * 2 1 4 4 C 1.50696 * 109.47766 * 120.00162 * 2 1 3 5 5 O 1.21275 * 120.00443 * 84.97079 * 4 2 1 6 6 N 1.34779 * 119.99702 * 265.25475 * 4 2 1 7 7 C 1.47478 * 125.66577 * 4.32822 * 6 4 2 8 8 C 1.55243 * 104.79430 * 155.93419 * 7 6 4 9 9 C 1.54516 * 101.43727 * 36.66649 * 8 7 6 10 10 C 1.47176 * 125.65816 * 184.64266 * 6 4 2 11 11 C 1.52271 * 110.20460 * 83.42525 * 9 8 7 12 12 C 1.53313 * 109.41813 * 182.19759 * 11 9 8 13 13 N 1.46925 * 108.71094 * 306.49149 * 12 11 9 14 14 C 1.36938 * 120.56525 * 234.21376 * 13 12 11 15 15 H 1.08007 * 119.99748 * 31.84311 * 14 13 12 16 16 C 1.38809 * 120.00117 * 211.83966 * 14 13 12 17 17 N 1.31617 * 119.99637 * 10.32571 * 16 14 13 18 18 Si 1.86795 * 120.00084 * 190.32836 * 16 14 13 19 19 H 1.48501 * 109.47308 * 60.00020 * 18 16 14 20 20 H 1.48499 * 109.47434 * 179.97438 * 18 16 14 21 21 H 1.48505 * 109.47279 * 300.00142 * 18 16 14 22 22 C 1.46936 * 118.86981 * 54.23314 * 13 12 11 23 23 C 1.52281 * 110.20626 * 206.61334 * 9 8 7 24 24 C 1.53004 * 109.47117 * 240.00532 * 2 1 3 25 25 F 1.39901 * 109.46488 * 299.99585 * 24 2 1 26 26 F 1.39893 * 109.47378 * 59.99377 * 24 2 1 27 27 F 1.39894 * 109.47333 * 180.02562 * 24 2 1 28 28 H 1.09004 * 109.46804 * 184.93006 * 1 2 3 29 29 H 1.09002 * 109.47281 * 304.91807 * 1 2 3 30 30 H 1.08991 * 109.47744 * 64.92655 * 1 2 3 31 31 H 1.09005 * 110.35843 * 274.88253 * 7 6 4 32 32 H 1.09003 * 110.35251 * 37.16620 * 7 6 4 33 33 H 1.08998 * 111.20097 * 278.57379 * 8 7 6 34 34 H 1.09001 * 110.91518 * 154.63830 * 8 7 6 35 35 H 1.08996 * 109.90708 * 300.83044 * 10 6 4 36 36 H 1.08995 * 109.91141 * 61.91132 * 10 6 4 37 37 H 1.09002 * 109.48011 * 302.18086 * 11 9 8 38 38 H 1.08998 * 109.48210 * 62.20983 * 11 9 8 39 39 H 1.09004 * 109.59785 * 186.72157 * 12 11 9 40 40 H 1.08995 * 109.59736 * 66.25799 * 12 11 9 41 41 H 0.97004 * 119.99861 * 179.97438 * 17 16 14 42 42 H 1.09006 * 109.59443 * 185.99422 * 22 13 12 43 43 H 1.08993 * 109.72803 * 65.60225 * 22 13 12 44 44 H 1.09004 * 109.47827 * 297.77448 * 23 9 8 45 45 H 1.08998 * 109.47947 * 57.79532 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0325 -0.7104 1.2304 5 8 2.1479 -1.9176 1.2290 6 7 2.3482 -0.0046 2.3343 7 6 2.1662 1.4487 2.5069 8 6 2.0719 1.6568 4.0425 9 6 3.0859 0.6102 4.5563 10 6 2.9378 -0.5552 3.5652 11 6 4.4978 1.1786 4.5093 12 6 5.4938 0.1081 4.9704 13 7 5.0683 -0.3976 6.2826 14 6 5.9324 -0.3913 7.3449 15 1 6.6811 0.3827 7.4274 16 6 5.8460 -1.3797 8.3157 17 7 5.0787 -2.4307 8.1183 18 14 6.8185 -1.2180 9.9023 19 1 6.4056 0.0192 10.6122 20 1 6.5543 -2.3959 10.7671 21 1 8.2685 -1.1485 9.5892 22 6 3.6999 -0.9107 6.4355 23 6 2.7156 0.1666 5.9652 24 6 2.0400 -0.7211 -1.2493 25 9 1.5736 -2.0402 -1.2493 26 9 1.5736 -0.0617 -2.3915 27 9 3.4389 -0.7217 -1.2491 28 1 -0.3633 -1.0239 0.0883 29 1 -0.3634 0.5882 0.8427 30 1 -0.3634 0.4355 -0.9307 31 1 3.0214 1.9889 2.1006 32 1 1.2457 1.7757 2.0232 33 1 1.0682 1.4411 4.4086 34 1 2.3782 2.6659 4.3179 35 1 2.2797 -1.3168 3.9835 36 1 3.9145 -0.9875 3.3478 37 1 4.7345 1.4799 3.4889 38 1 4.5633 2.0442 5.1685 39 1 6.4888 0.5456 5.0522 40 1 5.5099 -0.7104 4.2508 41 1 5.0186 -3.1216 8.7965 42 1 3.5123 -1.1450 7.4834 43 1 3.5743 -1.8094 5.8317 44 1 2.7627 1.0216 6.6397 45 1 1.7043 -0.2402 5.9642 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001040802815.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:03:22 Heat of formation + Delta-G solvation = -189.708467 kcal Electronic energy + Delta-G solvation = -30798.441052 eV Core-core repulsion = 26207.330113 eV Total energy + Delta-G solvation = -4591.110940 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.161 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -51.18457 -48.70733 -48.61387 -41.71926 -39.99712 -37.44418 -35.29364 -34.50863 -32.76957 -31.67001 -30.51370 -28.34904 -27.51345 -26.52446 -24.67124 -23.90072 -23.58013 -22.24350 -20.76183 -19.77374 -19.71887 -19.46196 -18.62566 -18.22320 -17.93759 -17.10613 -16.84658 -16.27791 -15.82516 -15.66774 -15.51939 -15.45987 -15.24162 -15.07662 -14.86331 -14.82522 -14.75459 -14.60215 -14.36581 -14.25485 -13.88196 -13.72111 -13.54441 -13.17758 -13.13115 -13.00868 -12.93195 -12.70636 -12.56867 -12.47292 -12.42898 -12.02819 -11.98256 -11.86595 -11.44281 -11.11518 -11.04077 -10.97493 -10.52389 -9.76864 -8.59627 -7.85550 -5.37881 1.15249 1.46649 1.48372 1.55331 1.55602 1.88228 2.50851 2.61785 2.91397 2.95117 3.28526 3.42405 3.61746 3.66563 3.74610 3.78330 3.84466 3.90002 4.26073 4.27839 4.42021 4.54407 4.58605 4.62379 4.65431 4.69064 4.73960 4.78104 4.87544 4.96532 5.04260 5.09536 5.11857 5.14884 5.27706 5.34335 5.41307 5.42806 5.55640 5.65374 5.81104 6.36688 6.42318 6.87999 7.17075 7.87381 8.39937 9.19312 Molecular weight = 334.16amu Principal moments of inertia in cm(-1) A = 0.024450 B = 0.002840 C = 0.002757 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1144.922633 B = 9858.037925 C =10153.492017 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.145 4.145 3 H 0.171 0.829 4 C 0.524 3.476 5 O -0.575 6.575 6 N -0.605 5.605 7 C 0.088 3.912 8 C -0.113 4.113 9 C -0.053 4.053 10 C 0.125 3.875 11 C -0.104 4.104 12 C 0.136 3.864 13 N -0.608 5.608 14 C -0.264 4.264 15 H 0.067 0.933 16 C -0.051 4.051 17 N -0.938 5.938 18 Si 0.970 3.030 19 H -0.273 1.273 20 H -0.297 1.297 21 H -0.277 1.277 22 C 0.177 3.823 23 C -0.112 4.112 24 C 0.463 3.537 25 F -0.184 7.184 26 F -0.170 7.170 27 F -0.193 7.193 28 H 0.057 0.943 29 H 0.108 0.892 30 H 0.106 0.894 31 H 0.094 0.906 32 H 0.117 0.883 33 H 0.085 0.915 34 H 0.111 0.889 35 H 0.044 0.956 36 H 0.043 0.957 37 H 0.080 0.920 38 H 0.073 0.927 39 H 0.052 0.948 40 H 0.000 1.000 41 H 0.249 0.751 42 H 0.051 0.949 43 H -0.015 1.015 44 H 0.066 0.934 45 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.209 14.751 -17.439 25.899 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.167 4.167 3 H 0.189 0.811 4 C 0.311 3.689 5 O -0.455 6.455 6 N -0.338 5.338 7 C -0.033 4.033 8 C -0.151 4.151 9 C -0.054 4.054 10 C 0.002 3.998 11 C -0.143 4.143 12 C 0.011 3.989 13 N -0.332 5.332 14 C -0.394 4.394 15 H 0.085 0.915 16 C -0.246 4.246 17 N -0.584 5.584 18 Si 0.798 3.202 19 H -0.199 1.199 20 H -0.223 1.223 21 H -0.203 1.203 22 C 0.051 3.949 23 C -0.151 4.151 24 C 0.408 3.592 25 F -0.165 7.165 26 F -0.151 7.151 27 F -0.174 7.174 28 H 0.076 0.924 29 H 0.127 0.873 30 H 0.125 0.875 31 H 0.112 0.888 32 H 0.135 0.865 33 H 0.104 0.896 34 H 0.129 0.871 35 H 0.063 0.937 36 H 0.061 0.939 37 H 0.099 0.901 38 H 0.092 0.908 39 H 0.071 0.929 40 H 0.018 0.982 41 H 0.058 0.942 42 H 0.070 0.930 43 H 0.003 0.997 44 H 0.085 0.915 45 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -12.161 13.931 -17.431 25.413 hybrid contribution 1.062 -1.320 0.911 1.924 sum -11.098 12.610 -16.521 23.561 Atomic orbital electron populations 1.21878 0.86804 1.04500 1.06945 1.22659 1.03126 1.03275 0.87623 0.81106 1.20096 0.77745 0.86735 0.84288 1.90807 1.55074 1.15910 1.83682 1.48612 1.60723 1.11005 1.13416 1.22936 1.04376 0.78128 0.97825 1.22908 0.99093 0.99730 0.93357 1.20892 0.96778 0.94330 0.93411 1.21878 0.96773 0.96835 0.84314 1.21763 0.93144 0.98040 1.01313 1.21138 0.96975 0.94492 0.86319 1.44247 1.09436 1.73444 1.06067 1.19505 1.12916 1.06052 1.00926 0.91520 1.25961 1.00587 0.94693 1.03393 1.70159 1.43374 1.09975 1.34935 0.85309 0.78690 0.76790 0.79433 1.19877 1.22291 1.20271 1.20596 0.83398 0.91880 0.99008 1.21898 0.98259 0.99568 0.95417 1.20235 0.75165 0.77874 0.85923 1.93214 1.88280 1.38260 1.96741 1.93196 1.88256 1.80430 1.53227 1.93190 1.30915 1.96453 1.96850 0.92381 0.87305 0.87539 0.88757 0.86498 0.89611 0.87085 0.93742 0.93893 0.90120 0.90846 0.92945 0.98216 0.94237 0.93011 0.99736 0.91513 0.91725 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.56 8.93 71.98 0.64 -0.91 16 2 C -0.14 -2.33 2.15 -11.54 -0.02 -2.36 16 3 H 0.17 1.32 7.12 -2.39 -0.02 1.31 16 4 C 0.52 13.85 6.58 87.66 0.58 14.43 16 5 O -0.58 -21.74 15.71 -3.01 -0.05 -21.79 16 6 N -0.61 -14.43 3.33 -811.83 -2.70 -17.13 16 7 C 0.09 1.13 5.86 86.96 0.51 1.64 16 8 C -0.11 -1.81 6.00 31.88 0.19 -1.62 16 9 C -0.05 -1.46 0.53 -51.91 -0.03 -1.49 16 10 C 0.12 4.00 5.06 86.49 0.44 4.44 16 11 C -0.10 -3.01 4.78 30.46 0.15 -2.86 16 12 C 0.14 5.57 6.22 86.40 0.54 6.11 16 13 N -0.61 -30.41 2.97 -698.60 -2.08 -32.49 16 14 C -0.26 -14.50 9.57 84.03 0.80 -13.70 16 15 H 0.07 3.54 7.85 -2.91 -0.02 3.51 16 16 C -0.05 -2.88 5.05 84.86 0.43 -2.45 16 17 N -0.94 -56.65 11.05 21.65 0.24 -56.41 16 18 Si 0.97 45.05 29.57 68.60 2.03 47.08 16 19 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 20 H -0.30 -13.96 7.11 99.48 0.71 -13.25 16 21 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 22 C 0.18 8.51 4.99 86.40 0.43 8.94 16 23 C -0.11 -3.85 4.71 30.46 0.14 -3.71 16 24 C 0.46 9.99 2.57 71.98 0.19 10.17 16 25 F -0.18 -5.10 15.48 44.97 0.70 -4.40 16 26 F -0.17 -2.97 16.71 44.97 0.75 -2.22 16 27 F -0.19 -4.95 17.02 44.97 0.77 -4.19 16 28 H 0.06 0.91 7.94 -2.38 -0.02 0.89 16 29 H 0.11 0.66 7.85 -2.39 -0.02 0.64 16 30 H 0.11 0.68 7.67 -2.39 -0.02 0.66 16 31 H 0.09 0.92 7.74 -2.38 -0.02 0.91 16 32 H 0.12 0.60 7.36 -2.39 -0.02 0.58 16 33 H 0.09 1.28 8.01 -2.39 -0.02 1.26 16 34 H 0.11 1.32 8.01 -2.39 -0.02 1.30 16 35 H 0.04 1.65 7.59 -2.39 -0.02 1.63 16 36 H 0.04 1.67 6.08 -2.39 -0.01 1.65 16 37 H 0.08 1.89 7.47 -2.39 -0.02 1.87 16 38 H 0.07 2.05 8.14 -2.39 -0.02 2.03 16 39 H 0.05 2.11 7.93 -2.39 -0.02 2.09 16 40 H 0.00 0.00 6.53 -2.39 -0.02 -0.02 16 41 H 0.25 14.62 8.31 -92.71 -0.77 13.85 16 42 H 0.05 2.86 6.09 -2.38 -0.01 2.84 16 43 H -0.02 -0.83 7.47 -2.39 -0.02 -0.85 16 44 H 0.07 2.24 8.14 -2.39 -0.02 2.22 16 45 H 0.06 2.03 8.10 -2.39 -0.02 2.01 16 Total: -1.00 -76.58 357.57 5.64 -70.94 By element: Atomic # 1 Polarization: 2.97 SS G_CDS: 1.00 Total: 3.98 kcal Atomic # 6 Polarization: 11.65 SS G_CDS: 4.98 Total: 16.63 kcal Atomic # 7 Polarization: -101.49 SS G_CDS: -4.54 Total: -106.03 kcal Atomic # 8 Polarization: -21.74 SS G_CDS: -0.05 Total: -21.79 kcal Atomic # 9 Polarization: -13.03 SS G_CDS: 2.21 Total: -10.81 kcal Atomic # 14 Polarization: 45.05 SS G_CDS: 2.03 Total: 47.08 kcal Total: -76.58 5.64 -70.94 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001040802815.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -118.767 kcal (2) G-P(sol) polarization free energy of solvation -76.580 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -195.346 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.638 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.942 kcal (6) G-S(sol) free energy of system = (1) + (5) -189.708 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds