Wall clock time and date at job start Tue Mar 31 2020 18:04:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09001 * 109.46920 * 2 1 4 4 C 1.50704 * 109.47177 * 119.99925 * 2 1 3 5 5 O 1.21282 * 119.99673 * 98.36077 * 4 2 1 6 6 N 1.34773 * 119.99696 * 278.36331 * 4 2 1 7 7 C 1.46940 * 120.69614 * 175.26024 * 6 4 2 8 8 C 1.53192 * 108.91467 * 125.80803 * 7 6 4 9 9 C 1.53156 * 109.27361 * 55.23738 * 8 7 6 10 10 C 1.52238 * 109.62991 * 299.83747 * 9 8 7 11 11 C 1.54503 * 110.24738 * 297.03598 * 10 9 8 12 12 C 1.55027 * 101.52396 * 276.23057 * 11 10 9 13 13 N 1.47481 * 104.90058 * 323.64768 * 12 11 10 14 14 C 1.36943 * 125.65808 * 204.03154 * 13 12 11 15 15 H 1.07996 * 120.00024 * 179.97438 * 14 13 12 16 16 C 1.38811 * 119.99929 * 359.96465 * 14 13 12 17 17 N 1.31617 * 120.00454 * 0.02562 * 16 14 13 18 18 Si 1.86803 * 120.00010 * 180.02562 * 16 14 13 19 19 H 1.48495 * 109.47144 * 60.00151 * 18 16 14 20 20 H 1.48493 * 109.47073 * 180.02562 * 18 16 14 21 21 H 1.48503 * 109.46933 * 300.00367 * 18 16 14 22 22 C 1.47191 * 108.68039 * 24.00250 * 13 12 11 23 23 C 1.47076 * 120.70337 * 355.23958 * 6 4 2 24 24 C 1.52997 * 109.46872 * 240.00179 * 2 1 3 25 25 F 1.39900 * 109.47053 * 299.99561 * 24 2 1 26 26 F 1.39893 * 109.47638 * 60.00127 * 24 2 1 27 27 F 1.39905 * 109.47084 * 180.02562 * 24 2 1 28 28 H 1.08996 * 109.46805 * 304.90494 * 1 2 3 29 29 H 1.09001 * 109.47309 * 64.90635 * 1 2 3 30 30 H 1.08998 * 109.47046 * 184.90512 * 1 2 3 31 31 H 1.09005 * 109.56311 * 5.97863 * 7 6 4 32 32 H 1.08994 * 109.65384 * 245.69458 * 7 6 4 33 33 H 1.08997 * 109.50860 * 295.29522 * 8 7 6 34 34 H 1.09003 * 109.53463 * 175.19315 * 8 7 6 35 35 H 1.09010 * 109.44406 * 59.87367 * 9 8 7 36 36 H 1.08995 * 109.44574 * 179.79715 * 9 8 7 37 37 H 1.08995 * 111.01423 * 34.29698 * 11 10 9 38 38 H 1.08998 * 111.01267 * 158.17241 * 11 10 9 39 39 H 1.08995 * 110.35316 * 204.78803 * 12 11 10 40 40 H 1.09008 * 110.44051 * 82.54443 * 12 11 10 41 41 H 0.96994 * 120.00693 * 179.97438 * 17 16 14 42 42 H 1.09005 * 109.90951 * 239.12934 * 22 13 12 43 43 H 1.08995 * 109.90630 * 117.86275 * 22 13 12 44 44 H 1.08991 * 109.57629 * 352.27185 * 23 6 4 45 45 H 1.08999 * 109.57522 * 112.66526 * 23 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 1.2305 5 8 2.3785 -1.8708 1.1619 6 7 2.0969 -0.0562 2.4070 7 6 2.4853 -0.7607 3.6367 8 6 3.6580 -0.0183 4.2851 9 6 3.2669 1.4452 4.5110 10 6 2.9328 2.0972 3.1765 11 6 4.1773 2.1096 2.2610 12 6 4.9114 3.3831 2.7536 13 7 3.8363 4.3400 3.0753 14 6 3.9621 5.7034 3.0998 15 1 3.1109 6.3199 3.3482 16 6 5.1838 6.2931 2.8054 17 7 6.2212 5.5419 2.5024 18 14 5.3556 8.1529 2.8395 19 1 5.0332 8.6550 4.1993 20 1 6.7493 8.5277 2.4904 21 1 4.4203 8.7544 1.8552 22 6 2.6056 3.5865 3.3652 23 6 1.7806 1.3779 2.4873 24 6 2.0400 -0.7212 -1.2493 25 9 1.5737 -2.0402 -1.2492 26 9 1.5737 -0.0618 -2.3915 27 9 3.4390 -0.7217 -1.2490 28 1 -0.3633 0.5880 0.8428 29 1 -0.3634 0.4358 -0.9307 30 1 -0.3633 -1.0239 0.0879 31 1 2.7878 -1.7794 3.3937 32 1 1.6423 -0.7852 4.3270 33 1 4.5266 -0.0656 3.6283 34 1 3.8991 -0.4823 5.2415 35 1 2.3962 1.4913 5.1653 36 1 4.0982 1.9753 4.9757 37 1 4.7877 1.2206 2.4192 38 1 3.8910 2.2039 1.2135 39 1 5.5501 3.7813 1.9652 40 1 5.5013 3.1624 3.6433 41 1 7.0748 5.9539 2.2964 42 1 1.8169 3.8837 2.6740 43 1 2.2912 3.7702 4.3925 44 1 1.6478 1.7793 1.4827 45 1 0.8656 1.5184 3.0627 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001054175976.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:04:01 Heat of formation + Delta-G solvation = -163.166512 kcal Electronic energy + Delta-G solvation = -31430.786389 eV Core-core repulsion = 26840.826395 eV Total energy + Delta-G solvation = -4589.959994 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.161 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -50.13766 -47.66097 -47.53270 -40.73832 -38.72570 -35.85813 -34.50679 -32.97935 -31.97705 -30.13211 -28.72490 -26.72017 -25.95144 -25.66206 -23.68630 -23.56930 -21.74082 -20.32725 -19.67484 -18.77956 -18.52164 -18.27897 -17.43547 -17.06217 -16.76570 -15.70351 -15.43115 -15.14920 -14.72451 -14.54768 -14.44067 -14.12126 -14.00558 -13.94429 -13.76700 -13.68215 -13.51140 -13.45956 -13.31697 -13.12909 -12.78059 -12.57744 -12.34448 -12.17971 -12.04606 -11.65540 -11.56609 -11.20759 -11.05223 -10.95582 -10.83987 -10.61611 -10.25259 -10.17216 -10.02329 -9.91894 -9.74076 -9.53611 -8.68773 -8.66020 -6.88078 -5.68909 -3.11156 2.22621 2.49242 2.85668 3.37406 3.41941 3.43436 3.56998 3.82081 3.89977 4.35841 4.45062 4.58481 4.66282 4.80888 4.89326 4.98150 5.04209 5.16251 5.22801 5.28650 5.37177 5.43658 5.50125 5.58872 5.66302 5.69043 5.74623 5.87121 5.95339 5.96783 6.22526 6.24355 6.37769 6.41252 6.49097 6.60798 6.72493 6.81786 7.17735 7.47496 7.57998 7.82428 7.88307 8.32223 9.17828 9.78834 10.43449 11.34629 Molecular weight = 334.16amu Principal moments of inertia in cm(-1) A = 0.014824 B = 0.003722 C = 0.003302 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1888.374324 B = 7521.508469 C = 8478.467645 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.168 4.168 3 H 0.139 0.861 4 C 0.528 3.472 5 O -0.528 6.528 6 N -0.596 5.596 7 C 0.114 3.886 8 C -0.136 4.136 9 C -0.099 4.099 10 C -0.085 4.085 11 C -0.134 4.134 12 C 0.155 3.845 13 N -0.602 5.602 14 C -0.225 4.225 15 H 0.076 0.924 16 C -0.009 4.009 17 N -0.921 5.921 18 Si 0.913 3.087 19 H -0.286 1.286 20 H -0.290 1.290 21 H -0.285 1.285 22 C 0.150 3.850 23 C 0.119 3.881 24 C 0.472 3.528 25 F -0.169 7.169 26 F -0.181 7.181 27 F -0.176 7.176 28 H 0.085 0.915 29 H 0.083 0.917 30 H 0.075 0.925 31 H 0.090 0.910 32 H 0.068 0.932 33 H 0.073 0.927 34 H 0.073 0.927 35 H 0.059 0.941 36 H 0.075 0.925 37 H 0.061 0.939 38 H 0.054 0.946 39 H 0.104 0.896 40 H 0.012 0.988 41 H 0.253 0.747 42 H 0.023 0.977 43 H 0.025 0.975 44 H 0.085 0.915 45 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.596 -12.747 -1.840 17.330 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.191 4.191 3 H 0.157 0.843 4 C 0.314 3.686 5 O -0.405 6.405 6 N -0.328 5.328 7 C -0.008 4.008 8 C -0.174 4.174 9 C -0.137 4.137 10 C -0.087 4.087 11 C -0.172 4.172 12 C 0.030 3.970 13 N -0.328 5.328 14 C -0.353 4.353 15 H 0.094 0.906 16 C -0.205 4.205 17 N -0.570 5.570 18 Si 0.744 3.256 19 H -0.212 1.212 20 H -0.216 1.216 21 H -0.212 1.212 22 C 0.023 3.977 23 C -0.004 4.004 24 C 0.417 3.583 25 F -0.150 7.150 26 F -0.162 7.162 27 F -0.157 7.157 28 H 0.104 0.896 29 H 0.102 0.898 30 H 0.094 0.906 31 H 0.109 0.891 32 H 0.086 0.914 33 H 0.091 0.909 34 H 0.092 0.908 35 H 0.078 0.922 36 H 0.094 0.906 37 H 0.079 0.921 38 H 0.073 0.927 39 H 0.122 0.878 40 H 0.030 0.970 41 H 0.064 0.936 42 H 0.041 0.959 43 H 0.042 0.958 44 H 0.103 0.897 45 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -11.229 -13.223 -1.925 17.454 hybrid contribution 0.260 1.091 -0.089 1.125 sum -10.969 -12.132 -2.013 16.479 Atomic orbital electron populations 1.21790 0.88961 1.04617 1.04976 1.22707 1.01620 1.03310 0.91421 0.84323 1.19634 0.78342 0.86733 0.83921 1.90778 1.48411 1.16552 1.84728 1.47986 1.66922 1.10393 1.07490 1.21642 0.97475 0.97020 0.84636 1.22003 0.98289 0.96227 1.00910 1.21347 1.01889 0.94407 0.96057 1.21352 0.95542 0.95780 0.95998 1.23054 0.96113 1.00512 0.97549 1.21921 0.90484 0.85056 0.99514 1.44513 1.05281 1.01887 1.81137 1.19009 0.95794 0.80412 1.40134 0.90570 1.24775 0.95690 0.98056 1.01936 1.69788 1.00990 1.32820 1.53360 0.86174 0.76833 0.84811 0.77793 1.21229 1.21574 1.21154 1.21152 0.90979 0.88048 0.97525 1.21851 0.98045 0.78658 1.01841 1.19796 0.75905 0.77953 0.84631 1.93213 1.88234 1.36951 1.96643 1.93182 1.88529 1.80874 1.53647 1.93228 1.29395 1.96381 1.96688 0.89622 0.89812 0.90574 0.89114 0.91352 0.90870 0.90828 0.92188 0.90627 0.92065 0.92745 0.87821 0.97023 0.93647 0.95895 0.95756 0.89715 0.90891 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.18 8.90 37.16 0.33 -0.85 16 2 C -0.17 -1.85 1.88 -91.77 -0.17 -2.03 16 3 H 0.14 1.40 6.22 -51.93 -0.32 1.08 16 4 C 0.53 7.01 6.58 -10.99 -0.07 6.93 16 5 O -0.53 -8.66 14.52 5.56 0.08 -8.57 16 6 N -0.60 -7.16 2.82 -173.17 -0.49 -7.65 16 7 C 0.11 1.28 6.42 -3.70 -0.02 1.26 16 8 C -0.14 -1.61 5.90 -26.55 -0.16 -1.76 16 9 C -0.10 -1.35 4.55 -27.04 -0.12 -1.47 16 10 C -0.09 -1.28 0.55 -154.12 -0.09 -1.36 16 11 C -0.13 -2.37 5.73 -24.87 -0.14 -2.51 16 12 C 0.15 3.58 5.57 -2.43 -0.01 3.56 16 13 N -0.60 -14.45 3.40 -170.24 -0.58 -15.03 16 14 C -0.23 -6.02 10.28 -15.06 -0.15 -6.17 16 15 H 0.08 1.96 7.83 -52.49 -0.41 1.55 16 16 C -0.01 -0.24 5.49 -17.43 -0.10 -0.34 16 17 N -0.92 -26.25 10.09 55.49 0.56 -25.69 16 18 Si 0.91 21.52 29.55 -169.99 -5.02 16.50 16 19 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 20 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 21 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 22 C 0.15 2.77 6.43 -3.33 -0.02 2.75 16 23 C 0.12 1.38 4.47 -4.08 -0.02 1.36 16 24 C 0.47 6.06 2.47 37.16 0.09 6.15 16 25 F -0.17 -2.35 15.56 2.25 0.04 -2.32 16 26 F -0.18 -2.16 16.71 2.25 0.04 -2.12 16 27 F -0.18 -2.63 16.91 2.25 0.04 -2.59 16 28 H 0.08 0.57 7.77 -51.93 -0.40 0.17 16 29 H 0.08 0.58 7.67 -51.93 -0.40 0.18 16 30 H 0.08 0.64 7.94 -51.93 -0.41 0.23 16 31 H 0.09 1.10 7.00 -51.93 -0.36 0.73 16 32 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 33 H 0.07 0.99 6.22 -51.93 -0.32 0.67 16 34 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 35 H 0.06 0.72 8.14 -51.92 -0.42 0.30 16 36 H 0.08 1.21 7.49 -51.93 -0.39 0.82 16 37 H 0.06 1.05 6.00 -51.93 -0.31 0.73 16 38 H 0.05 0.96 7.90 -51.93 -0.41 0.55 16 39 H 0.10 2.77 5.88 -51.93 -0.31 2.46 16 40 H 0.01 0.29 7.76 -51.92 -0.40 -0.11 16 41 H 0.25 7.05 8.31 -40.82 -0.34 6.71 16 42 H 0.02 0.41 7.80 -51.93 -0.40 0.01 16 43 H 0.02 0.45 7.83 -51.93 -0.41 0.05 16 44 H 0.08 0.93 5.30 -51.93 -0.28 0.65 16 45 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 LS Contribution 353.59 15.07 5.33 5.33 Total: -1.00 -30.96 353.59 -7.04 -37.99 By element: Atomic # 1 Polarization: 5.01 SS G_CDS: -6.37 Total: -1.36 kcal Atomic # 6 Polarization: 6.18 SS G_CDS: -0.66 Total: 5.52 kcal Atomic # 7 Polarization: -47.87 SS G_CDS: -0.51 Total: -48.38 kcal Atomic # 8 Polarization: -8.66 SS G_CDS: 0.08 Total: -8.57 kcal Atomic # 9 Polarization: -7.14 SS G_CDS: 0.11 Total: -7.03 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.02 Total: 16.50 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -30.96 -7.04 -37.99 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054175976.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -125.174 kcal (2) G-P(sol) polarization free energy of solvation -30.957 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -156.131 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.036 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.993 kcal (6) G-S(sol) free energy of system = (1) + (5) -163.167 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds