Wall clock time and date at job start Tue Mar 31 2020 18:04:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09001 * 109.46920 * 2 1 4 4 C 1.50704 * 109.47177 * 119.99925 * 2 1 3 5 5 O 1.21282 * 119.99673 * 98.36077 * 4 2 1 6 6 N 1.34773 * 119.99696 * 278.36331 * 4 2 1 7 7 C 1.46940 * 120.69614 * 175.26024 * 6 4 2 8 8 C 1.53192 * 108.91467 * 125.80803 * 7 6 4 9 9 C 1.53156 * 109.27361 * 55.23738 * 8 7 6 10 10 C 1.52238 * 109.62991 * 299.83747 * 9 8 7 11 11 C 1.54503 * 110.24738 * 297.03598 * 10 9 8 12 12 C 1.55027 * 101.52396 * 276.23057 * 11 10 9 13 13 N 1.47481 * 104.90058 * 323.64768 * 12 11 10 14 14 C 1.36943 * 125.65808 * 204.03154 * 13 12 11 15 15 H 1.07996 * 120.00024 * 179.97438 * 14 13 12 16 16 C 1.38811 * 119.99929 * 359.96465 * 14 13 12 17 17 N 1.31617 * 120.00454 * 0.02562 * 16 14 13 18 18 Si 1.86803 * 120.00010 * 180.02562 * 16 14 13 19 19 H 1.48495 * 109.47144 * 60.00151 * 18 16 14 20 20 H 1.48493 * 109.47073 * 180.02562 * 18 16 14 21 21 H 1.48503 * 109.46933 * 300.00367 * 18 16 14 22 22 C 1.47191 * 108.68039 * 24.00250 * 13 12 11 23 23 C 1.47076 * 120.70337 * 355.23958 * 6 4 2 24 24 C 1.52997 * 109.46872 * 240.00179 * 2 1 3 25 25 F 1.39900 * 109.47053 * 299.99561 * 24 2 1 26 26 F 1.39893 * 109.47638 * 60.00127 * 24 2 1 27 27 F 1.39905 * 109.47084 * 180.02562 * 24 2 1 28 28 H 1.08996 * 109.46805 * 304.90494 * 1 2 3 29 29 H 1.09001 * 109.47309 * 64.90635 * 1 2 3 30 30 H 1.08998 * 109.47046 * 184.90512 * 1 2 3 31 31 H 1.09005 * 109.56311 * 5.97863 * 7 6 4 32 32 H 1.08994 * 109.65384 * 245.69458 * 7 6 4 33 33 H 1.08997 * 109.50860 * 295.29522 * 8 7 6 34 34 H 1.09003 * 109.53463 * 175.19315 * 8 7 6 35 35 H 1.09010 * 109.44406 * 59.87367 * 9 8 7 36 36 H 1.08995 * 109.44574 * 179.79715 * 9 8 7 37 37 H 1.08995 * 111.01423 * 34.29698 * 11 10 9 38 38 H 1.08998 * 111.01267 * 158.17241 * 11 10 9 39 39 H 1.08995 * 110.35316 * 204.78803 * 12 11 10 40 40 H 1.09008 * 110.44051 * 82.54443 * 12 11 10 41 41 H 0.96994 * 120.00693 * 179.97438 * 17 16 14 42 42 H 1.09005 * 109.90951 * 239.12934 * 22 13 12 43 43 H 1.08995 * 109.90630 * 117.86275 * 22 13 12 44 44 H 1.08991 * 109.57629 * 352.27185 * 23 6 4 45 45 H 1.08999 * 109.57522 * 112.66526 * 23 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 1.2305 5 8 2.3785 -1.8708 1.1619 6 7 2.0969 -0.0562 2.4070 7 6 2.4853 -0.7607 3.6367 8 6 3.6580 -0.0183 4.2851 9 6 3.2669 1.4452 4.5110 10 6 2.9328 2.0972 3.1765 11 6 4.1773 2.1096 2.2610 12 6 4.9114 3.3831 2.7536 13 7 3.8363 4.3400 3.0753 14 6 3.9621 5.7034 3.0998 15 1 3.1109 6.3199 3.3482 16 6 5.1838 6.2931 2.8054 17 7 6.2212 5.5419 2.5024 18 14 5.3556 8.1529 2.8395 19 1 5.0332 8.6550 4.1993 20 1 6.7493 8.5277 2.4904 21 1 4.4203 8.7544 1.8552 22 6 2.6056 3.5865 3.3652 23 6 1.7806 1.3779 2.4873 24 6 2.0400 -0.7212 -1.2493 25 9 1.5737 -2.0402 -1.2492 26 9 1.5737 -0.0618 -2.3915 27 9 3.4390 -0.7217 -1.2490 28 1 -0.3633 0.5880 0.8428 29 1 -0.3634 0.4358 -0.9307 30 1 -0.3633 -1.0239 0.0879 31 1 2.7878 -1.7794 3.3937 32 1 1.6423 -0.7852 4.3270 33 1 4.5266 -0.0656 3.6283 34 1 3.8991 -0.4823 5.2415 35 1 2.3962 1.4913 5.1653 36 1 4.0982 1.9753 4.9757 37 1 4.7877 1.2206 2.4192 38 1 3.8910 2.2039 1.2135 39 1 5.5501 3.7813 1.9652 40 1 5.5013 3.1624 3.6433 41 1 7.0748 5.9539 2.2964 42 1 1.8169 3.8837 2.6740 43 1 2.2912 3.7702 4.3925 44 1 1.6478 1.7793 1.4827 45 1 0.8656 1.5184 3.0627 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001054175976.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:04:00 Heat of formation + Delta-G solvation = -180.970954 kcal Electronic energy + Delta-G solvation = -31431.558448 eV Core-core repulsion = 26840.826395 eV Total energy + Delta-G solvation = -4590.732053 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.161 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -51.15614 -48.67918 -48.58231 -41.80634 -39.98722 -37.24437 -35.39431 -34.59551 -33.10273 -31.72338 -30.34100 -27.51226 -27.38216 -26.85542 -25.25798 -24.58025 -22.85216 -21.94088 -20.81158 -19.83032 -19.61527 -19.39622 -18.80866 -18.20248 -18.04311 -16.91438 -16.64175 -16.40339 -16.29404 -15.71852 -15.56683 -15.44589 -15.04759 -14.98630 -14.79712 -14.73051 -14.71418 -14.64684 -14.35561 -14.16708 -14.11017 -13.73949 -13.42758 -13.38109 -13.18371 -12.96553 -12.87456 -12.73852 -12.48820 -12.26968 -12.18814 -12.10137 -11.88351 -11.65729 -11.53821 -11.27760 -11.14355 -10.88107 -10.69398 -9.67406 -8.83454 -7.73751 -5.17278 1.24757 1.48652 1.50949 1.55973 1.57329 1.90589 2.52373 2.62747 2.87525 2.96785 3.35821 3.42945 3.65240 3.69587 3.71351 3.81786 3.90409 3.98979 4.12096 4.27363 4.35022 4.41226 4.53537 4.62431 4.64761 4.66074 4.73527 4.82487 4.86845 4.91801 4.98129 5.02570 5.09124 5.19585 5.21293 5.42613 5.46719 5.50101 5.54539 5.65621 5.86071 6.20299 6.34160 6.90529 7.14122 7.83522 8.47274 9.27914 Molecular weight = 334.16amu Principal moments of inertia in cm(-1) A = 0.014824 B = 0.003722 C = 0.003302 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1888.374324 B = 7521.508469 C = 8478.467645 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.163 4.163 3 H 0.151 0.849 4 C 0.525 3.475 5 O -0.565 6.565 6 N -0.592 5.592 7 C 0.115 3.885 8 C -0.129 4.129 9 C -0.096 4.096 10 C -0.073 4.073 11 C -0.119 4.119 12 C 0.161 3.839 13 N -0.623 5.623 14 C -0.233 4.233 15 H 0.085 0.915 16 C -0.068 4.068 17 N -0.952 5.952 18 Si 0.976 3.024 19 H -0.279 1.279 20 H -0.299 1.299 21 H -0.275 1.275 22 C 0.144 3.856 23 C 0.123 3.877 24 C 0.465 3.535 25 F -0.178 7.178 26 F -0.176 7.176 27 F -0.193 7.193 28 H 0.108 0.892 29 H 0.097 0.903 30 H 0.071 0.929 31 H 0.081 0.919 32 H 0.099 0.901 33 H 0.049 0.951 34 H 0.094 0.906 35 H 0.086 0.914 36 H 0.042 0.958 37 H 0.065 0.935 38 H 0.056 0.944 39 H 0.063 0.937 40 H -0.019 1.019 41 H 0.244 0.756 42 H 0.041 0.959 43 H 0.030 0.970 44 H 0.097 0.903 45 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.627 -12.811 -1.247 19.485 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.186 4.186 3 H 0.168 0.832 4 C 0.312 3.688 5 O -0.444 6.444 6 N -0.323 5.323 7 C -0.007 4.007 8 C -0.167 4.167 9 C -0.134 4.134 10 C -0.074 4.074 11 C -0.158 4.158 12 C 0.036 3.964 13 N -0.350 5.350 14 C -0.362 4.362 15 H 0.103 0.897 16 C -0.261 4.261 17 N -0.602 5.602 18 Si 0.804 3.196 19 H -0.205 1.205 20 H -0.225 1.225 21 H -0.201 1.201 22 C 0.019 3.981 23 C 0.001 3.999 24 C 0.411 3.589 25 F -0.159 7.159 26 F -0.157 7.157 27 F -0.175 7.175 28 H 0.126 0.874 29 H 0.116 0.884 30 H 0.090 0.910 31 H 0.099 0.901 32 H 0.117 0.883 33 H 0.068 0.932 34 H 0.113 0.887 35 H 0.105 0.895 36 H 0.061 0.939 37 H 0.083 0.917 38 H 0.075 0.925 39 H 0.081 0.919 40 H -0.001 1.001 41 H 0.054 0.946 42 H 0.059 0.941 43 H 0.048 0.952 44 H 0.115 0.885 45 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -14.307 -13.287 -1.315 19.570 hybrid contribution 1.218 1.101 -0.244 1.661 sum -13.089 -12.186 -1.559 17.951 Atomic orbital electron populations 1.21878 0.86385 1.04986 1.06738 1.22788 1.03618 1.02962 0.89196 0.83154 1.19976 0.77778 0.86417 0.84645 1.90767 1.50079 1.18265 1.85278 1.48028 1.66316 1.10459 1.07487 1.21724 0.98094 0.96163 0.84680 1.21931 0.97786 0.95310 1.01624 1.21313 1.01767 0.94867 0.95420 1.21267 0.95339 0.94394 0.96374 1.22845 0.97151 0.97638 0.98148 1.21607 0.90583 0.87325 0.96920 1.44792 1.07341 1.01612 1.81214 1.19438 0.95919 0.82130 1.38707 0.89725 1.25585 0.95702 1.02116 1.02668 1.70073 1.01076 1.34121 1.54934 0.85187 0.76214 0.80118 0.78045 1.20497 1.22545 1.20114 1.21384 0.89151 0.89532 0.98017 1.21895 0.97493 0.77799 1.02763 1.20164 0.75158 0.77900 0.85701 1.93193 1.88210 1.37762 1.96740 1.93188 1.88323 1.80642 1.53567 1.93192 1.30996 1.96452 1.96827 0.87370 0.88442 0.91027 0.90090 0.88336 0.93248 0.88734 0.89521 0.93893 0.91690 0.92516 0.91901 1.00103 0.94643 0.94103 0.95202 0.88532 0.87261 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.80 8.90 71.98 0.64 -1.16 16 2 C -0.16 -3.20 1.88 -11.54 -0.02 -3.22 16 3 H 0.15 2.57 6.22 -2.39 -0.01 2.56 16 4 C 0.52 12.77 6.58 87.66 0.58 13.34 16 5 O -0.56 -17.90 14.52 -3.04 -0.04 -17.94 16 6 N -0.59 -12.29 2.82 -820.18 -2.32 -14.61 16 7 C 0.11 2.21 6.42 86.36 0.55 2.76 16 8 C -0.13 -2.76 5.90 30.71 0.18 -2.58 16 9 C -0.10 -2.39 4.55 30.39 0.14 -2.26 16 10 C -0.07 -1.99 0.55 -51.93 -0.03 -2.02 16 11 C -0.12 -4.20 5.73 31.80 0.18 -4.02 16 12 C 0.16 7.71 5.57 86.89 0.48 8.19 16 13 N -0.62 -30.00 3.40 -692.51 -2.36 -32.35 16 14 C -0.23 -12.46 10.28 84.03 0.86 -11.59 16 15 H 0.08 4.27 7.83 -2.91 -0.02 4.24 16 16 C -0.07 -3.80 5.49 84.86 0.47 -3.33 16 17 N -0.95 -56.45 10.09 21.65 0.22 -56.23 16 18 Si 0.98 44.72 29.55 68.60 2.03 46.75 16 19 H -0.28 -12.34 7.11 99.48 0.71 -11.63 16 20 H -0.30 -14.01 7.11 99.48 0.71 -13.30 16 21 H -0.28 -12.06 7.11 99.48 0.71 -11.35 16 22 C 0.14 5.03 6.43 86.46 0.56 5.58 16 23 C 0.12 2.33 4.47 86.04 0.38 2.71 16 24 C 0.47 11.42 2.47 71.98 0.18 11.60 16 25 F -0.18 -4.82 15.56 44.97 0.70 -4.12 16 26 F -0.18 -3.94 16.71 44.97 0.75 -3.19 16 27 F -0.19 -5.75 16.91 44.97 0.76 -4.99 16 28 H 0.11 0.90 7.77 -2.39 -0.02 0.88 16 29 H 0.10 0.99 7.67 -2.39 -0.02 0.97 16 30 H 0.07 1.00 7.94 -2.39 -0.02 0.98 16 31 H 0.08 1.79 7.00 -2.38 -0.02 1.77 16 32 H 0.10 1.37 8.14 -2.39 -0.02 1.36 16 33 H 0.05 1.30 6.22 -2.39 -0.01 1.29 16 34 H 0.09 1.65 8.14 -2.39 -0.02 1.64 16 35 H 0.09 1.73 8.14 -2.38 -0.02 1.71 16 36 H 0.04 1.36 7.49 -2.39 -0.02 1.34 16 37 H 0.06 2.24 6.00 -2.39 -0.01 2.22 16 38 H 0.06 1.96 7.90 -2.39 -0.02 1.94 16 39 H 0.06 3.54 5.88 -2.39 -0.01 3.53 16 40 H -0.02 -1.00 7.76 -2.38 -0.02 -1.02 16 41 H 0.24 14.23 8.31 -92.71 -0.77 13.46 16 42 H 0.04 1.31 7.80 -2.38 -0.02 1.29 16 43 H 0.03 1.03 7.83 -2.39 -0.02 1.01 16 44 H 0.10 1.67 5.30 -2.39 -0.01 1.65 16 45 H 0.11 1.45 8.14 -2.39 -0.02 1.43 16 Total: -1.00 -70.62 353.59 5.91 -64.71 By element: Atomic # 1 Polarization: 6.96 SS G_CDS: 1.01 Total: 7.98 kcal Atomic # 6 Polarization: 8.85 SS G_CDS: 5.15 Total: 14.00 kcal Atomic # 7 Polarization: -98.75 SS G_CDS: -4.45 Total: -103.20 kcal Atomic # 8 Polarization: -17.90 SS G_CDS: -0.04 Total: -17.94 kcal Atomic # 9 Polarization: -14.51 SS G_CDS: 2.21 Total: -12.30 kcal Atomic # 14 Polarization: 44.72 SS G_CDS: 2.03 Total: 46.75 kcal Total: -70.62 5.91 -64.71 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054175976.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -116.261 kcal (2) G-P(sol) polarization free energy of solvation -70.618 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -186.879 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.908 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.710 kcal (6) G-S(sol) free energy of system = (1) + (5) -180.971 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds