Wall clock time and date at job start Tue Mar 31 2020 18:04:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08994 * 109.47097 * 2 1 4 4 C 1.50697 * 109.46887 * 239.99585 * 2 1 3 5 5 O 1.21285 * 119.99872 * 253.78614 * 4 2 1 6 6 N 1.34771 * 120.00137 * 73.79118 * 4 2 1 7 7 C 1.46935 * 120.70566 * 173.57273 * 6 4 2 8 8 C 1.53186 * 109.01741 * 234.21960 * 7 6 4 9 9 C 1.53163 * 109.28178 * 304.72173 * 8 7 6 10 10 C 1.52234 * 109.65472 * 60.16586 * 9 8 7 11 11 C 1.54503 * 110.25378 * 62.93037 * 10 9 8 12 12 C 1.55023 * 101.52234 * 153.41201 * 11 10 9 13 13 N 1.47488 * 104.90363 * 323.64197 * 12 11 10 14 14 C 1.36938 * 125.66374 * 204.03999 * 13 12 11 15 15 H 1.08002 * 119.99974 * 150.40416 * 14 13 12 16 16 C 1.38813 * 119.99844 * 330.39824 * 14 13 12 17 17 N 1.31621 * 120.00036 * 159.53144 * 16 14 13 18 18 Si 1.86800 * 120.00160 * 339.53505 * 16 14 13 19 19 H 1.48498 * 109.47221 * 87.98708 * 18 16 14 20 20 H 1.48496 * 109.46996 * 207.98511 * 18 16 14 21 21 H 1.48503 * 109.46973 * 327.98657 * 18 16 14 22 22 C 1.47191 * 108.67473 * 24.01662 * 13 12 11 23 23 C 1.47295 * 120.84314 * 353.68215 * 6 4 2 24 24 C 1.52998 * 109.46798 * 119.99790 * 2 1 3 25 25 F 1.39905 * 109.47169 * 179.97438 * 24 2 1 26 26 F 1.39904 * 109.47338 * 299.99780 * 24 2 1 27 27 F 1.39898 * 109.47500 * 59.99696 * 24 2 1 28 28 H 1.08998 * 109.47321 * 183.42162 * 1 2 3 29 29 H 1.08998 * 109.46934 * 303.42168 * 1 2 3 30 30 H 1.08995 * 109.46859 * 63.42009 * 1 2 3 31 31 H 1.08996 * 109.56311 * 114.32739 * 7 6 4 32 32 H 1.09005 * 109.55644 * 354.10458 * 7 6 4 33 33 H 1.09003 * 109.50293 * 64.66403 * 8 7 6 34 34 H 1.08999 * 109.50044 * 184.74038 * 8 7 6 35 35 H 1.08989 * 109.44169 * 180.22318 * 9 8 7 36 36 H 1.09009 * 109.43824 * 300.11228 * 9 8 7 37 37 H 1.09009 * 111.01101 * 271.46695 * 11 10 9 38 38 H 1.08995 * 111.01283 * 35.34487 * 11 10 9 39 39 H 1.09000 * 110.34806 * 204.79214 * 12 11 10 40 40 H 1.08997 * 110.45105 * 82.54754 * 12 11 10 41 41 H 0.96994 * 119.99839 * 179.97438 * 17 16 14 42 42 H 1.09003 * 109.90889 * 239.12112 * 22 13 12 43 43 H 1.08995 * 109.91026 * 117.85140 * 22 13 12 44 44 H 1.08995 * 109.54273 * 7.68836 * 23 6 4 45 45 H 1.09002 * 109.66235 * 247.39276 * 23 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2304 5 8 2.5109 -1.8209 -1.1365 6 7 1.9498 -0.1120 -2.4351 7 6 2.5594 -0.7273 -3.6220 8 6 3.4993 0.2860 -4.2825 9 6 2.7237 1.5712 -4.5874 10 6 2.1778 2.1589 -3.2935 11 6 3.3388 2.5562 -2.3548 12 6 2.6872 3.6867 -1.5177 13 7 1.8114 4.4028 -2.4640 14 6 1.3983 5.7027 -2.3424 15 1 1.1879 6.2873 -3.2257 16 6 1.2500 6.2689 -1.0837 17 7 1.2530 7.5779 -0.9463 18 14 1.0460 5.1730 0.4153 19 1 2.3832 4.8214 0.9571 20 1 0.2655 5.8937 1.4528 21 1 0.3273 3.9327 0.0276 22 6 1.4555 3.4884 -3.5612 23 6 1.2493 1.1741 -2.5929 24 6 2.0400 -0.7212 1.2493 25 9 3.4390 -0.7218 1.2491 26 9 1.5736 -0.0616 2.3916 27 9 1.5736 -2.0402 1.2494 28 1 -0.3634 -1.0258 0.0613 29 1 -0.3633 0.5660 0.8577 30 1 -0.3633 0.4598 -0.9190 31 1 1.7785 -1.0139 -4.3263 32 1 3.1253 -1.6104 -3.3252 33 1 4.3248 0.5107 -3.6072 34 1 3.8911 -0.1319 -5.2098 35 1 3.3892 2.2927 -5.0612 36 1 1.8967 1.3448 -5.2604 37 1 3.6324 1.7197 -1.7205 38 1 4.1899 2.9314 -2.9230 39 1 3.4520 4.3578 -1.1268 40 1 2.0998 3.2660 -0.7016 41 1 1.1490 7.9735 -0.0669 42 1 1.7852 3.9048 -4.5131 43 1 0.3775 3.3287 -3.5764 44 1 0.9768 1.5637 -1.6121 45 1 0.3499 1.0308 -3.1918 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001054175977.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:04:04 Heat of formation + Delta-G solvation = -165.138874 kcal Electronic energy + Delta-G solvation = -32118.035297 eV Core-core repulsion = 27527.989775 eV Total energy + Delta-G solvation = -4590.045522 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.161 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -50.14362 -47.65486 -47.55369 -40.91532 -38.87327 -36.09712 -34.61193 -33.06539 -32.14165 -30.65327 -29.07201 -26.77317 -26.20663 -25.94323 -23.87435 -23.27404 -21.91267 -20.82916 -19.76232 -18.89788 -18.65242 -18.35437 -17.45821 -17.01301 -16.87931 -15.97301 -15.46390 -15.24011 -15.08298 -14.65418 -14.43947 -14.41925 -14.05815 -14.00721 -13.79019 -13.76041 -13.68701 -13.53100 -13.39264 -13.15440 -12.86276 -12.73207 -12.52854 -12.29440 -12.06759 -12.02480 -11.70728 -11.61450 -11.32667 -11.19075 -11.00144 -10.90159 -10.58390 -10.31491 -10.16852 -10.08427 -9.94724 -9.61116 -8.81340 -8.69001 -7.01197 -6.05390 -3.43291 2.21082 2.41357 2.82106 3.27348 3.36113 3.41597 3.55867 3.78388 3.89858 4.35206 4.45580 4.56317 4.62763 4.71726 4.75245 4.76077 4.86991 4.93346 5.13410 5.20066 5.22215 5.28824 5.33542 5.40516 5.52580 5.57536 5.60689 5.69222 5.73412 5.74423 5.87399 5.99788 6.06940 6.16021 6.22691 6.30911 6.45634 6.56118 6.59199 6.65954 7.08586 7.73758 7.80924 8.24889 8.75945 9.59186 10.12202 11.10916 Molecular weight = 334.16amu Principal moments of inertia in cm(-1) A = 0.011360 B = 0.005814 C = 0.004232 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2464.282422 B = 4814.607360 C = 6614.843948 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.170 4.170 3 H 0.138 0.862 4 C 0.531 3.469 5 O -0.527 6.527 6 N -0.600 5.600 7 C 0.114 3.886 8 C -0.134 4.134 9 C -0.101 4.101 10 C -0.087 4.087 11 C -0.121 4.121 12 C 0.115 3.885 13 N -0.605 5.605 14 C -0.247 4.247 15 H 0.087 0.913 16 C 0.031 3.969 17 N -0.904 5.904 18 Si 0.879 3.121 19 H -0.285 1.285 20 H -0.300 1.300 21 H -0.274 1.274 22 C 0.145 3.855 23 C 0.114 3.886 24 C 0.474 3.526 25 F -0.176 7.176 26 F -0.179 7.179 27 F -0.170 7.170 28 H 0.077 0.923 29 H 0.085 0.915 30 H 0.088 0.912 31 H 0.069 0.931 32 H 0.091 0.909 33 H 0.069 0.931 34 H 0.075 0.925 35 H 0.072 0.928 36 H 0.065 0.935 37 H 0.060 0.940 38 H 0.074 0.926 39 H 0.057 0.943 40 H 0.016 0.984 41 H 0.264 0.736 42 H 0.039 0.961 43 H 0.033 0.967 44 H 0.091 0.909 45 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.547 -17.346 -3.004 17.613 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.193 4.193 3 H 0.156 0.844 4 C 0.317 3.683 5 O -0.403 6.403 6 N -0.332 5.332 7 C -0.008 4.008 8 C -0.172 4.172 9 C -0.139 4.139 10 C -0.089 4.089 11 C -0.159 4.159 12 C -0.010 4.010 13 N -0.332 5.332 14 C -0.374 4.374 15 H 0.104 0.896 16 C -0.169 4.169 17 N -0.546 5.546 18 Si 0.709 3.291 19 H -0.212 1.212 20 H -0.227 1.227 21 H -0.199 1.199 22 C 0.020 3.980 23 C -0.008 4.008 24 C 0.419 3.581 25 F -0.157 7.157 26 F -0.161 7.161 27 F -0.151 7.151 28 H 0.096 0.904 29 H 0.104 0.896 30 H 0.107 0.893 31 H 0.088 0.912 32 H 0.109 0.891 33 H 0.088 0.912 34 H 0.094 0.906 35 H 0.090 0.910 36 H 0.083 0.917 37 H 0.079 0.921 38 H 0.093 0.907 39 H 0.075 0.925 40 H 0.034 0.966 41 H 0.074 0.926 42 H 0.057 0.943 43 H 0.051 0.949 44 H 0.109 0.891 45 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 0.757 -17.720 -2.823 17.960 hybrid contribution -0.084 -0.325 1.219 1.265 sum 0.673 -18.045 -1.603 18.129 Atomic orbital electron populations 1.21946 0.88956 1.04660 1.05573 1.22704 1.01867 1.03255 0.91427 0.84400 1.19636 0.78921 0.85840 0.83943 1.90776 1.45341 1.18524 1.85663 1.48053 1.54957 1.22723 1.07467 1.21633 0.96667 0.96575 0.85932 1.21952 0.98548 0.95844 1.00881 1.21392 0.99798 0.96549 0.96184 1.21403 0.96365 0.95342 0.95753 1.22758 0.97118 0.98052 0.97972 1.21943 0.93154 0.93223 0.92712 1.44738 1.54149 1.09861 1.24437 1.18558 1.41423 0.83813 0.93627 0.89578 1.25279 0.98831 0.95306 0.97474 1.69820 1.51857 1.09320 1.23644 0.86908 0.78033 0.80706 0.83448 1.21161 1.22743 1.19931 1.21323 0.96430 0.87211 0.93045 1.21995 0.94575 0.81692 1.02532 1.19733 0.75819 0.77855 0.84660 1.93207 1.29442 1.96388 1.96706 1.93200 1.88512 1.80837 1.53502 1.93202 1.88237 1.36989 1.96661 0.90380 0.89620 0.89316 0.91230 0.89085 0.91183 0.90608 0.90965 0.91676 0.92135 0.90717 0.92495 0.96647 0.92566 0.94264 0.94903 0.89094 0.90335 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.64 8.55 37.16 0.32 -1.32 16 2 C -0.17 -2.17 1.85 -91.77 -0.17 -2.34 16 3 H 0.14 1.76 7.06 -51.93 -0.37 1.40 16 4 C 0.53 7.23 6.70 -10.99 -0.07 7.16 16 5 O -0.53 -8.56 14.40 5.55 0.08 -8.48 16 6 N -0.60 -7.13 2.52 -172.94 -0.44 -7.56 16 7 C 0.11 1.16 6.39 -3.71 -0.02 1.14 16 8 C -0.13 -1.27 5.91 -26.55 -0.16 -1.42 16 9 C -0.10 -1.07 4.53 -27.04 -0.12 -1.20 16 10 C -0.09 -1.17 0.56 -154.08 -0.09 -1.25 16 11 C -0.12 -1.82 4.90 -24.87 -0.12 -1.94 16 12 C 0.11 2.26 4.57 -2.43 -0.01 2.25 16 13 N -0.60 -13.29 3.05 -170.23 -0.52 -13.81 16 14 C -0.25 -6.60 10.52 -15.06 -0.16 -6.76 16 15 H 0.09 2.48 8.06 -52.49 -0.42 2.05 16 16 C 0.03 0.87 5.44 -17.43 -0.09 0.77 16 17 N -0.90 -26.95 13.97 55.49 0.78 -26.17 16 18 Si 0.88 21.36 24.54 -169.99 -4.17 17.19 16 19 H -0.28 -6.78 7.08 56.52 0.40 -6.38 16 20 H -0.30 -7.47 7.11 56.52 0.40 -7.07 16 21 H -0.27 -6.22 6.82 56.52 0.39 -5.83 16 22 C 0.15 2.49 6.43 -3.33 -0.02 2.47 16 23 C 0.11 1.38 3.81 -3.91 -0.01 1.37 16 24 C 0.47 6.59 2.44 37.16 0.09 6.68 16 25 F -0.18 -2.67 16.73 2.25 0.04 -2.63 16 26 F -0.18 -2.44 16.86 2.25 0.04 -2.40 16 27 F -0.17 -2.46 15.53 2.25 0.03 -2.42 16 28 H 0.08 0.78 7.71 -51.93 -0.40 0.38 16 29 H 0.08 0.86 7.90 -51.93 -0.41 0.45 16 30 H 0.09 0.87 6.01 -51.93 -0.31 0.56 16 31 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.09 1.01 7.05 -51.93 -0.37 0.65 16 33 H 0.07 0.74 7.31 -51.93 -0.38 0.36 16 34 H 0.08 0.58 8.14 -51.93 -0.42 0.15 16 35 H 0.07 0.79 8.11 -51.94 -0.42 0.37 16 36 H 0.06 0.62 8.14 -51.92 -0.42 0.19 16 37 H 0.06 0.86 7.59 -51.92 -0.39 0.46 16 38 H 0.07 1.11 8.01 -51.93 -0.42 0.69 16 39 H 0.06 1.23 7.84 -51.93 -0.41 0.82 16 40 H 0.02 0.32 4.73 -51.93 -0.25 0.07 16 41 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 42 H 0.04 0.67 7.79 -51.93 -0.40 0.27 16 43 H 0.03 0.56 7.80 -51.93 -0.41 0.15 16 44 H 0.09 1.21 3.97 -51.93 -0.21 1.00 16 45 H 0.08 0.83 8.11 -51.93 -0.42 0.41 16 LS Contribution 348.97 15.07 5.26 5.26 Total: -1.00 -30.97 348.97 -5.95 -36.91 By element: Atomic # 1 Polarization: 4.92 SS G_CDS: -6.40 Total: -1.48 kcal Atomic # 6 Polarization: 6.24 SS G_CDS: -0.65 Total: 5.60 kcal Atomic # 7 Polarization: -47.37 SS G_CDS: -0.18 Total: -47.55 kcal Atomic # 8 Polarization: -8.56 SS G_CDS: 0.08 Total: -8.48 kcal Atomic # 9 Polarization: -7.56 SS G_CDS: 0.11 Total: -7.45 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -4.17 Total: 17.19 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -30.97 -5.95 -36.91 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054175977.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -128.226 kcal (2) G-P(sol) polarization free energy of solvation -30.966 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -159.192 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.947 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.913 kcal (6) G-S(sol) free energy of system = (1) + (5) -165.139 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds