Wall clock time and date at job start Tue Mar 31 2020 18:04:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08994 * 109.47097 * 2 1 4 4 C 1.50697 * 109.46887 * 239.99585 * 2 1 3 5 5 O 1.21285 * 119.99872 * 253.78614 * 4 2 1 6 6 N 1.34771 * 120.00137 * 73.79118 * 4 2 1 7 7 C 1.46935 * 120.70566 * 173.57273 * 6 4 2 8 8 C 1.53186 * 109.01741 * 234.21960 * 7 6 4 9 9 C 1.53163 * 109.28178 * 304.72173 * 8 7 6 10 10 C 1.52234 * 109.65472 * 60.16586 * 9 8 7 11 11 C 1.54503 * 110.25378 * 62.93037 * 10 9 8 12 12 C 1.55023 * 101.52234 * 153.41201 * 11 10 9 13 13 N 1.47488 * 104.90363 * 323.64197 * 12 11 10 14 14 C 1.36938 * 125.66374 * 204.03999 * 13 12 11 15 15 H 1.08002 * 119.99974 * 150.40416 * 14 13 12 16 16 C 1.38813 * 119.99844 * 330.39824 * 14 13 12 17 17 N 1.31621 * 120.00036 * 159.53144 * 16 14 13 18 18 Si 1.86800 * 120.00160 * 339.53505 * 16 14 13 19 19 H 1.48498 * 109.47221 * 87.98708 * 18 16 14 20 20 H 1.48496 * 109.46996 * 207.98511 * 18 16 14 21 21 H 1.48503 * 109.46973 * 327.98657 * 18 16 14 22 22 C 1.47191 * 108.67473 * 24.01662 * 13 12 11 23 23 C 1.47295 * 120.84314 * 353.68215 * 6 4 2 24 24 C 1.52998 * 109.46798 * 119.99790 * 2 1 3 25 25 F 1.39905 * 109.47169 * 179.97438 * 24 2 1 26 26 F 1.39904 * 109.47338 * 299.99780 * 24 2 1 27 27 F 1.39898 * 109.47500 * 59.99696 * 24 2 1 28 28 H 1.08998 * 109.47321 * 183.42162 * 1 2 3 29 29 H 1.08998 * 109.46934 * 303.42168 * 1 2 3 30 30 H 1.08995 * 109.46859 * 63.42009 * 1 2 3 31 31 H 1.08996 * 109.56311 * 114.32739 * 7 6 4 32 32 H 1.09005 * 109.55644 * 354.10458 * 7 6 4 33 33 H 1.09003 * 109.50293 * 64.66403 * 8 7 6 34 34 H 1.08999 * 109.50044 * 184.74038 * 8 7 6 35 35 H 1.08989 * 109.44169 * 180.22318 * 9 8 7 36 36 H 1.09009 * 109.43824 * 300.11228 * 9 8 7 37 37 H 1.09009 * 111.01101 * 271.46695 * 11 10 9 38 38 H 1.08995 * 111.01283 * 35.34487 * 11 10 9 39 39 H 1.09000 * 110.34806 * 204.79214 * 12 11 10 40 40 H 1.08997 * 110.45105 * 82.54754 * 12 11 10 41 41 H 0.96994 * 119.99839 * 179.97438 * 17 16 14 42 42 H 1.09003 * 109.90889 * 239.12112 * 22 13 12 43 43 H 1.08995 * 109.91026 * 117.85140 * 22 13 12 44 44 H 1.08995 * 109.54273 * 7.68836 * 23 6 4 45 45 H 1.09002 * 109.66235 * 247.39276 * 23 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2304 5 8 2.5109 -1.8209 -1.1365 6 7 1.9498 -0.1120 -2.4351 7 6 2.5594 -0.7273 -3.6220 8 6 3.4993 0.2860 -4.2825 9 6 2.7237 1.5712 -4.5874 10 6 2.1778 2.1589 -3.2935 11 6 3.3388 2.5562 -2.3548 12 6 2.6872 3.6867 -1.5177 13 7 1.8114 4.4028 -2.4640 14 6 1.3983 5.7027 -2.3424 15 1 1.1879 6.2873 -3.2257 16 6 1.2500 6.2689 -1.0837 17 7 1.2530 7.5779 -0.9463 18 14 1.0460 5.1730 0.4153 19 1 2.3832 4.8214 0.9571 20 1 0.2655 5.8937 1.4528 21 1 0.3273 3.9327 0.0276 22 6 1.4555 3.4884 -3.5612 23 6 1.2493 1.1741 -2.5929 24 6 2.0400 -0.7212 1.2493 25 9 3.4390 -0.7218 1.2491 26 9 1.5736 -0.0616 2.3916 27 9 1.5736 -2.0402 1.2494 28 1 -0.3634 -1.0258 0.0613 29 1 -0.3633 0.5660 0.8577 30 1 -0.3633 0.4598 -0.9190 31 1 1.7785 -1.0139 -4.3263 32 1 3.1253 -1.6104 -3.3252 33 1 4.3248 0.5107 -3.6072 34 1 3.8911 -0.1319 -5.2098 35 1 3.3892 2.2927 -5.0612 36 1 1.8967 1.3448 -5.2604 37 1 3.6324 1.7197 -1.7205 38 1 4.1899 2.9314 -2.9230 39 1 3.4520 4.3578 -1.1268 40 1 2.0998 3.2660 -0.7016 41 1 1.1490 7.9735 -0.0669 42 1 1.7852 3.9048 -4.5131 43 1 0.3775 3.3287 -3.5764 44 1 0.9768 1.5637 -1.6121 45 1 0.3499 1.0308 -3.1918 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001054175977.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:04:03 Heat of formation + Delta-G solvation = -183.735264 kcal Electronic energy + Delta-G solvation = -32118.841697 eV Core-core repulsion = 27527.989775 eV Total energy + Delta-G solvation = -4590.851922 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.161 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -51.23025 -48.74387 -48.65751 -41.94745 -40.06602 -37.37273 -35.56889 -34.66894 -33.37188 -32.07334 -30.49782 -27.76463 -27.57939 -26.91855 -25.27543 -24.37518 -23.05155 -22.24465 -20.89890 -19.99378 -19.72617 -19.45575 -18.76124 -18.39079 -17.98400 -17.29366 -16.88153 -16.47357 -16.26338 -15.68596 -15.63500 -15.50437 -15.21574 -15.14438 -15.10572 -14.91522 -14.85254 -14.78736 -14.43873 -14.25775 -14.07692 -13.79872 -13.71422 -13.56069 -13.36489 -13.10841 -13.04562 -12.85689 -12.60437 -12.56108 -12.29630 -12.06823 -11.92373 -11.74907 -11.57445 -11.31470 -11.29070 -10.94491 -10.73743 -9.75626 -8.87617 -8.18860 -5.51929 1.20150 1.32608 1.38020 1.42389 1.48632 1.83271 2.42948 2.52657 2.77940 2.87576 3.05241 3.33413 3.36764 3.59638 3.64916 3.70477 3.78332 3.80773 4.10074 4.17535 4.22180 4.26991 4.36796 4.44673 4.52528 4.55596 4.64930 4.74026 4.84433 4.89357 4.92559 4.93307 4.95871 5.03870 5.14533 5.17343 5.19721 5.40184 5.46611 5.47628 5.80241 6.11102 6.14745 6.81061 6.82306 7.55105 8.16597 9.01605 Molecular weight = 334.16amu Principal moments of inertia in cm(-1) A = 0.011360 B = 0.005814 C = 0.004232 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2464.282422 B = 4814.607360 C = 6614.843948 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.170 4.170 3 H 0.139 0.861 4 C 0.530 3.470 5 O -0.557 6.557 6 N -0.592 5.592 7 C 0.111 3.889 8 C -0.126 4.126 9 C -0.096 4.096 10 C -0.075 4.075 11 C -0.108 4.108 12 C 0.109 3.891 13 N -0.621 5.621 14 C -0.233 4.233 15 H 0.052 0.948 16 C -0.028 4.028 17 N -0.956 5.956 18 Si 0.935 3.065 19 H -0.280 1.280 20 H -0.310 1.310 21 H -0.244 1.244 22 C 0.142 3.858 23 C 0.114 3.886 24 C 0.470 3.530 25 F -0.187 7.187 26 F -0.178 7.178 27 F -0.174 7.174 28 H 0.083 0.917 29 H 0.091 0.909 30 H 0.100 0.900 31 H 0.093 0.907 32 H 0.081 0.919 33 H 0.057 0.943 34 H 0.101 0.899 35 H 0.069 0.931 36 H 0.086 0.914 37 H 0.073 0.927 38 H 0.076 0.924 39 H 0.029 0.971 40 H 0.020 0.980 41 H 0.262 0.738 42 H 0.039 0.961 43 H 0.042 0.958 44 H 0.082 0.918 45 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.123 -20.002 -4.065 20.412 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.192 4.192 3 H 0.157 0.843 4 C 0.317 3.683 5 O -0.436 6.436 6 N -0.323 5.323 7 C -0.010 4.010 8 C -0.164 4.164 9 C -0.134 4.134 10 C -0.076 4.076 11 C -0.146 4.146 12 C -0.016 4.016 13 N -0.348 5.348 14 C -0.363 4.363 15 H 0.070 0.930 16 C -0.224 4.224 17 N -0.601 5.601 18 Si 0.762 3.238 19 H -0.207 1.207 20 H -0.239 1.239 21 H -0.168 1.168 22 C 0.018 3.982 23 C -0.008 4.008 24 C 0.416 3.584 25 F -0.168 7.168 26 F -0.160 7.160 27 F -0.156 7.156 28 H 0.102 0.898 29 H 0.109 0.891 30 H 0.118 0.882 31 H 0.111 0.889 32 H 0.100 0.900 33 H 0.075 0.925 34 H 0.120 0.880 35 H 0.088 0.912 36 H 0.104 0.896 37 H 0.092 0.908 38 H 0.095 0.905 39 H 0.048 0.952 40 H 0.038 0.962 41 H 0.071 0.929 42 H 0.057 0.943 43 H 0.060 0.940 44 H 0.100 0.900 45 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 0.336 -20.422 -3.926 20.799 hybrid contribution 0.100 0.535 1.439 1.538 sum 0.435 -19.887 -2.487 20.046 Atomic orbital electron populations 1.22012 0.87277 1.05331 1.06430 1.22757 1.03269 1.02760 0.90426 0.84319 1.19740 0.78555 0.85524 0.84520 1.90768 1.46843 1.19873 1.86086 1.48076 1.54439 1.22316 1.07514 1.21815 0.97385 0.96298 0.85552 1.21907 0.97716 0.95004 1.01739 1.21373 1.00571 0.96808 0.94658 1.21328 0.95318 0.93919 0.97031 1.22665 0.97574 0.96598 0.97781 1.22018 0.92458 0.93937 0.93169 1.44810 1.54823 1.09195 1.26019 1.18461 1.39580 0.85818 0.92392 0.93020 1.25896 0.99733 0.96280 1.00475 1.69959 1.54795 1.11301 1.24086 0.86012 0.78222 0.79883 0.79642 1.20668 1.23893 1.16807 1.21487 0.97445 0.88102 0.91200 1.22014 0.95045 0.81295 1.02400 1.19966 0.75372 0.77825 0.85268 1.93183 1.30399 1.96432 1.96786 1.93198 1.88420 1.80749 1.53615 1.93188 1.88222 1.37459 1.96716 0.89838 0.89055 0.88179 0.88905 0.90022 0.92452 0.88023 0.91196 0.89557 0.90801 0.90510 0.95230 0.96224 0.92943 0.94276 0.94035 0.89989 0.87757 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.80 8.55 71.98 0.62 -2.19 16 2 C -0.17 -3.92 1.85 -11.54 -0.02 -3.95 16 3 H 0.14 3.18 7.06 -2.39 -0.02 3.16 16 4 C 0.53 13.07 6.70 87.66 0.59 13.66 16 5 O -0.56 -17.07 14.40 -3.04 -0.04 -17.11 16 6 N -0.59 -11.93 2.52 -819.47 -2.07 -14.00 16 7 C 0.11 1.81 6.39 86.36 0.55 2.36 16 8 C -0.13 -1.84 5.91 30.71 0.18 -1.66 16 9 C -0.10 -1.63 4.53 30.40 0.14 -1.49 16 10 C -0.07 -1.74 0.56 -51.90 -0.03 -1.77 16 11 C -0.11 -2.99 4.90 31.80 0.16 -2.84 16 12 C 0.11 4.14 4.57 86.88 0.40 4.53 16 13 N -0.62 -26.74 3.05 -692.50 -2.11 -28.85 16 14 C -0.23 -12.69 10.52 84.03 0.88 -11.80 16 15 H 0.05 3.10 8.06 -2.91 -0.02 3.07 16 16 C -0.03 -1.61 5.44 84.86 0.46 -1.15 16 17 N -0.96 -58.95 13.97 21.65 0.30 -58.65 16 18 Si 0.93 44.08 24.54 68.60 1.68 45.77 16 19 H -0.28 -12.87 7.08 99.48 0.70 -12.16 16 20 H -0.31 -15.10 7.11 99.48 0.71 -14.40 16 21 H -0.24 -10.20 6.82 99.48 0.68 -9.52 16 22 C 0.14 4.53 6.43 86.47 0.56 5.08 16 23 C 0.11 2.31 3.81 86.03 0.33 2.64 16 24 C 0.47 12.36 2.44 71.98 0.18 12.53 16 25 F -0.19 -5.46 16.73 44.97 0.75 -4.71 16 26 F -0.18 -4.57 16.86 44.97 0.76 -3.81 16 27 F -0.17 -4.83 15.53 44.97 0.70 -4.14 16 28 H 0.08 1.44 7.71 -2.39 -0.02 1.42 16 29 H 0.09 1.57 7.90 -2.39 -0.02 1.56 16 30 H 0.10 1.60 6.01 -2.39 -0.01 1.58 16 31 H 0.09 1.14 8.14 -2.39 -0.02 1.13 16 32 H 0.08 1.56 7.05 -2.38 -0.02 1.55 16 33 H 0.06 1.01 7.31 -2.39 -0.02 1.00 16 34 H 0.10 1.05 8.14 -2.39 -0.02 1.03 16 35 H 0.07 1.27 8.11 -2.39 -0.02 1.25 16 36 H 0.09 1.17 8.14 -2.38 -0.02 1.15 16 37 H 0.07 1.89 7.59 -2.38 -0.02 1.87 16 38 H 0.08 2.11 8.01 -2.39 -0.02 2.09 16 39 H 0.03 1.27 7.84 -2.39 -0.02 1.25 16 40 H 0.02 0.76 4.73 -2.39 -0.01 0.74 16 41 H 0.26 15.41 8.31 -92.71 -0.77 14.64 16 42 H 0.04 1.26 7.79 -2.39 -0.02 1.24 16 43 H 0.04 1.28 7.80 -2.39 -0.02 1.26 16 44 H 0.08 1.86 3.97 -2.39 -0.01 1.85 16 45 H 0.10 1.66 8.11 -2.39 -0.02 1.64 16 Total: -1.00 -69.08 348.97 5.94 -63.14 By element: Atomic # 1 Polarization: 7.41 SS G_CDS: 0.98 Total: 8.39 kcal Atomic # 6 Polarization: 8.98 SS G_CDS: 4.98 Total: 13.96 kcal Atomic # 7 Polarization: -97.62 SS G_CDS: -3.87 Total: -101.49 kcal Atomic # 8 Polarization: -17.07 SS G_CDS: -0.04 Total: -17.11 kcal Atomic # 9 Polarization: -14.87 SS G_CDS: 2.21 Total: -12.66 kcal Atomic # 14 Polarization: 44.08 SS G_CDS: 1.68 Total: 45.77 kcal Total: -69.08 5.94 -63.14 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054175977.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -120.593 kcal (2) G-P(sol) polarization free energy of solvation -69.079 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -189.672 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.937 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.142 kcal (6) G-S(sol) free energy of system = (1) + (5) -183.735 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds