Wall clock time and date at job start Tue Mar 31 2020 18:04:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09003 * 109.47203 * 2 1 4 4 C 1.50697 * 109.47244 * 119.99530 * 2 1 3 5 5 O 1.21284 * 119.99865 * 100.00796 * 4 2 1 6 6 N 1.34773 * 120.00335 * 280.01338 * 4 2 1 7 7 C 1.46940 * 120.71621 * 355.80349 * 6 4 2 8 8 C 1.53194 * 108.90115 * 234.30864 * 7 6 4 9 9 C 1.53183 * 109.27768 * 304.61894 * 8 7 6 10 10 C 1.52057 * 109.73452 * 59.92654 * 9 8 7 11 11 C 1.54575 * 110.67900 * 64.31194 * 10 9 8 12 12 C 1.54467 * 102.76467 * 152.61724 * 11 10 9 13 13 N 1.47087 * 107.42391 * 338.69373 * 12 11 10 14 14 C 1.36932 * 125.63044 * 178.94730 * 13 12 11 15 15 H 1.08004 * 120.00379 * 179.97438 * 14 13 12 16 16 C 1.38818 * 120.00168 * 359.97438 * 14 13 12 17 17 N 1.31617 * 119.99360 * 359.97438 * 16 14 13 18 18 Si 1.86796 * 120.00195 * 179.97438 * 16 14 13 19 19 H 1.48498 * 109.47040 * 60.00163 * 18 16 14 20 20 H 1.48495 * 109.47147 * 179.97438 * 18 16 14 21 21 H 1.48502 * 109.46966 * 300.00171 * 18 16 14 22 22 C 1.47576 * 108.74190 * 358.92918 * 13 12 11 23 23 C 1.47104 * 120.71779 * 175.78522 * 6 4 2 24 24 C 1.52995 * 109.47270 * 240.00308 * 2 1 3 25 25 F 1.39912 * 109.46905 * 299.99661 * 24 2 1 26 26 F 1.39899 * 109.47650 * 59.99485 * 24 2 1 27 27 F 1.39901 * 109.47238 * 180.02562 * 24 2 1 28 28 H 1.09000 * 109.47341 * 61.61639 * 1 2 3 29 29 H 1.08998 * 109.47186 * 181.61700 * 1 2 3 30 30 H 1.08999 * 109.47211 * 301.61745 * 1 2 3 31 31 H 1.09001 * 109.56279 * 114.49093 * 7 6 4 32 32 H 1.08999 * 109.66468 * 354.19472 * 7 6 4 33 33 H 1.08998 * 109.50488 * 184.68080 * 8 7 6 34 34 H 1.08998 * 109.53676 * 64.57484 * 8 7 6 35 35 H 1.09004 * 109.42453 * 299.84803 * 9 8 7 36 36 H 1.09000 * 109.38312 * 179.97438 * 9 8 7 37 37 H 1.09002 * 110.71093 * 34.34273 * 11 10 9 38 38 H 1.09004 * 110.86666 * 270.96303 * 11 10 9 39 39 H 1.09004 * 109.87975 * 219.20245 * 12 11 10 40 40 H 1.08994 * 109.88039 * 98.19314 * 12 11 10 41 41 H 0.97007 * 119.99937 * 180.02562 * 17 16 14 42 42 H 1.08998 * 110.37380 * 142.11532 * 22 13 12 43 43 H 1.08997 * 110.37965 * 264.46275 * 22 13 12 44 44 H 1.09003 * 109.56938 * 7.97370 * 23 6 4 45 45 H 1.08992 * 109.56801 * 247.61887 * 23 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 1.2305 5 8 2.4066 -1.8615 1.1558 6 7 2.0657 -0.0663 2.4140 7 6 1.7031 1.3547 2.5057 8 6 2.8508 2.1175 3.1748 9 6 3.1625 1.4753 4.5302 10 6 3.5671 0.0233 4.3294 11 6 4.8831 -0.0702 3.5239 12 6 5.4869 -1.4061 4.0105 13 7 4.8791 -1.7153 5.3138 14 6 5.1348 -2.8285 6.0692 15 1 4.6353 -2.9643 7.0171 16 6 6.0359 -3.7825 5.6166 17 7 6.6441 -3.6173 4.4612 18 14 6.3851 -5.3007 6.6474 19 1 5.1265 -6.0628 6.8483 20 1 7.3755 -6.1574 5.9471 21 1 6.9304 -4.8890 7.9659 22 6 3.9488 -0.6276 5.6731 23 6 2.4654 -0.7710 3.6418 24 6 2.0400 -0.7212 -1.2492 25 9 1.5737 -2.0403 -1.2492 26 9 1.5736 -0.0618 -2.3915 27 9 3.4390 -0.7217 -1.2489 28 1 -0.3634 0.4885 -0.9041 29 1 -0.3633 -1.0272 0.0290 30 1 -0.3633 0.5387 0.8751 31 1 0.7969 1.4624 3.1018 32 1 1.5324 1.7549 1.5063 33 1 2.5590 3.1571 3.3233 34 1 3.7357 2.0749 2.5399 35 1 2.2775 1.5206 5.1649 36 1 3.9793 2.0165 5.0076 37 1 5.5433 0.7626 3.7660 38 1 4.6813 -0.1053 2.4533 39 1 6.5669 -1.3068 4.1195 40 1 5.2577 -2.1980 3.2975 41 1 7.2736 -4.2841 4.1447 42 1 3.0635 -1.0321 6.1639 43 1 4.4439 0.0975 6.3190 44 1 2.8354 -1.7645 3.3886 45 1 1.6076 -0.8580 4.3085 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001054175978.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:04:07 Heat of formation + Delta-G solvation = -163.089504 kcal Electronic energy + Delta-G solvation = -31523.306018 eV Core-core repulsion = 26933.349363 eV Total energy + Delta-G solvation = -4589.956655 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.161 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -50.11935 -47.65983 -47.48999 -40.61074 -38.52308 -35.97267 -34.30982 -32.91395 -31.95695 -29.90988 -28.63999 -26.73254 -26.00441 -25.62711 -23.76279 -23.01735 -21.91274 -20.21689 -19.68474 -18.78974 -18.41015 -18.20861 -17.40165 -16.95357 -16.68670 -15.58848 -15.40100 -14.96301 -14.54649 -14.51190 -14.39987 -14.03370 -13.97964 -13.83074 -13.76948 -13.70611 -13.63005 -13.47516 -13.27828 -13.06200 -12.58589 -12.49213 -12.30055 -12.14690 -11.93495 -11.66760 -11.63338 -11.16159 -11.04323 -10.85055 -10.77758 -10.59509 -10.14394 -10.04656 -9.92062 -9.74967 -9.65023 -9.50588 -8.57244 -8.51233 -6.75376 -5.62436 -2.96623 2.33624 2.57714 2.92424 3.45866 3.49756 3.51780 3.57750 3.86521 3.89640 4.35912 4.54689 4.56279 4.63189 4.73030 4.85850 4.94651 5.11455 5.12698 5.22072 5.27346 5.30981 5.49069 5.58885 5.62703 5.66729 5.76705 5.87759 5.96621 6.01461 6.10246 6.23873 6.29350 6.43893 6.46587 6.59878 6.67536 6.77374 6.89716 7.34692 7.63735 7.73549 7.93669 8.07626 8.34453 9.29621 9.90308 10.56327 11.48715 Molecular weight = 334.16amu Principal moments of inertia in cm(-1) A = 0.014179 B = 0.003998 C = 0.003416 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1974.244195 B = 7001.509694 C = 8193.846273 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.165 4.165 3 H 0.133 0.867 4 C 0.518 3.482 5 O -0.507 6.507 6 N -0.600 5.600 7 C 0.103 3.897 8 C -0.135 4.135 9 C -0.102 4.102 10 C -0.087 4.087 11 C -0.128 4.128 12 C 0.178 3.822 13 N -0.604 5.604 14 C -0.232 4.232 15 H 0.076 0.924 16 C -0.006 4.006 17 N -0.919 5.919 18 Si 0.910 3.090 19 H -0.285 1.285 20 H -0.291 1.291 21 H -0.286 1.286 22 C 0.149 3.851 23 C 0.135 3.865 24 C 0.471 3.529 25 F -0.166 7.166 26 F -0.184 7.184 27 F -0.175 7.175 28 H 0.081 0.919 29 H 0.077 0.923 30 H 0.083 0.917 31 H 0.072 0.928 32 H 0.079 0.921 33 H 0.073 0.927 34 H 0.070 0.930 35 H 0.061 0.939 36 H 0.067 0.933 37 H 0.054 0.946 38 H 0.056 0.944 39 H 0.039 0.961 40 H 0.048 0.952 41 H 0.252 0.748 42 H 0.038 0.962 43 H 0.022 0.978 44 H 0.107 0.893 45 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.146 15.547 -8.955 22.847 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.187 4.187 3 H 0.151 0.849 4 C 0.303 3.697 5 O -0.381 6.381 6 N -0.333 5.333 7 C -0.020 4.020 8 C -0.173 4.173 9 C -0.140 4.140 10 C -0.089 4.089 11 C -0.167 4.167 12 C 0.054 3.946 13 N -0.330 5.330 14 C -0.360 4.360 15 H 0.094 0.906 16 C -0.202 4.202 17 N -0.566 5.566 18 Si 0.741 3.259 19 H -0.212 1.212 20 H -0.216 1.216 21 H -0.213 1.213 22 C 0.022 3.978 23 C 0.014 3.986 24 C 0.416 3.584 25 F -0.147 7.147 26 F -0.166 7.166 27 F -0.156 7.156 28 H 0.100 0.900 29 H 0.096 0.904 30 H 0.102 0.898 31 H 0.090 0.910 32 H 0.097 0.903 33 H 0.091 0.909 34 H 0.089 0.911 35 H 0.080 0.920 36 H 0.086 0.914 37 H 0.073 0.927 38 H 0.074 0.926 39 H 0.057 0.943 40 H 0.066 0.934 41 H 0.063 0.937 42 H 0.056 0.944 43 H 0.039 0.961 44 H 0.125 0.875 45 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -13.779 14.671 -9.044 22.065 hybrid contribution 0.415 -0.734 0.314 0.900 sum -13.364 13.936 -8.730 21.190 Atomic orbital electron populations 1.21798 0.89142 1.04937 1.04542 1.22675 1.01467 1.02758 0.91831 0.84895 1.19649 0.79180 0.87054 0.83822 1.90888 1.45981 1.16715 1.84468 1.48044 1.66667 1.10861 1.07772 1.21842 0.98169 0.80643 1.01359 1.21945 0.98684 0.98724 0.97941 1.21320 1.01379 0.95188 0.96068 1.21459 0.95447 0.94053 0.97906 1.22827 0.95066 1.00387 0.98385 1.21159 0.95806 0.90720 0.86945 1.44498 1.47902 1.20432 1.20203 1.18970 1.20580 0.95958 1.00477 0.90594 1.24796 0.99355 0.98825 0.97260 1.69968 1.31371 1.35519 1.19705 0.86229 0.77675 0.82861 0.79150 1.21192 1.21640 1.21266 1.21406 0.93247 0.90744 0.92374 1.21507 0.96243 0.97707 0.83169 1.19816 0.75982 0.78203 0.84413 1.93239 1.88175 1.36738 1.96585 1.93167 1.88590 1.80942 1.53879 1.93236 1.29315 1.96387 1.96656 0.90028 0.90372 0.89771 0.90953 0.90280 0.90857 0.91109 0.92036 0.91399 0.92706 0.92562 0.94306 0.93405 0.93723 0.94415 0.96085 0.87481 0.91796 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.10 8.81 37.16 0.33 -0.77 16 2 C -0.16 -1.71 1.86 -91.78 -0.17 -1.88 16 3 H 0.13 0.98 6.37 -51.93 -0.33 0.65 16 4 C 0.52 7.63 6.60 -10.99 -0.07 7.56 16 5 O -0.51 -10.16 14.50 5.55 0.08 -10.07 16 6 N -0.60 -7.90 2.60 -173.20 -0.45 -8.35 16 7 C 0.10 0.88 5.71 -3.70 -0.02 0.86 16 8 C -0.13 -1.25 5.92 -26.54 -0.16 -1.40 16 9 C -0.10 -1.21 4.64 -27.12 -0.13 -1.33 16 10 C -0.09 -1.42 0.56 -153.97 -0.09 -1.50 16 11 C -0.13 -2.44 4.92 -25.13 -0.12 -2.56 16 12 C 0.18 4.49 4.95 -2.95 -0.01 4.48 16 13 N -0.60 -15.51 3.39 -170.31 -0.58 -16.08 16 14 C -0.23 -6.56 10.28 -15.06 -0.15 -6.71 16 15 H 0.08 2.06 7.83 -52.48 -0.41 1.65 16 16 C -0.01 -0.17 5.49 -17.43 -0.10 -0.26 16 17 N -0.92 -28.05 10.30 55.49 0.57 -27.48 16 18 Si 0.91 22.74 29.55 -169.99 -5.02 17.71 16 19 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 20 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 21 H -0.29 -6.99 7.11 56.52 0.40 -6.58 16 22 C 0.15 2.98 6.15 -2.87 -0.02 2.96 16 23 C 0.13 2.21 5.08 -4.10 -0.02 2.19 16 24 C 0.47 6.07 2.46 37.15 0.09 6.16 16 25 F -0.17 -2.53 15.52 2.25 0.03 -2.49 16 26 F -0.18 -2.04 16.77 2.25 0.04 -2.00 16 27 F -0.17 -2.67 16.87 2.25 0.04 -2.64 16 28 H 0.08 0.46 7.76 -51.93 -0.40 0.06 16 29 H 0.08 0.69 7.85 -51.93 -0.41 0.29 16 30 H 0.08 0.48 7.46 -51.93 -0.39 0.09 16 31 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.08 0.48 5.31 -51.93 -0.28 0.20 16 33 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 34 H 0.07 0.74 7.42 -51.93 -0.39 0.36 16 35 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 36 H 0.07 0.82 8.10 -51.93 -0.42 0.40 16 37 H 0.05 0.98 7.99 -51.93 -0.41 0.56 16 38 H 0.06 1.07 7.70 -51.93 -0.40 0.67 16 39 H 0.04 1.09 7.50 -51.93 -0.39 0.70 16 40 H 0.05 1.39 7.37 -51.93 -0.38 1.00 16 41 H 0.25 7.54 8.31 -40.82 -0.34 7.20 16 42 H 0.04 0.73 8.01 -51.93 -0.42 0.32 16 43 H 0.02 0.42 8.00 -51.93 -0.42 0.01 16 44 H 0.11 2.30 6.61 -51.93 -0.34 1.95 16 45 H 0.06 0.95 8.12 -51.93 -0.42 0.53 16 LS Contribution 356.37 15.07 5.37 5.37 Total: -1.00 -34.20 356.37 -7.17 -41.37 By element: Atomic # 1 Polarization: 3.49 SS G_CDS: -6.61 Total: -3.12 kcal Atomic # 6 Polarization: 8.43 SS G_CDS: -0.64 Total: 7.79 kcal Atomic # 7 Polarization: -51.46 SS G_CDS: -0.45 Total: -51.92 kcal Atomic # 8 Polarization: -10.16 SS G_CDS: 0.08 Total: -10.07 kcal Atomic # 9 Polarization: -7.24 SS G_CDS: 0.11 Total: -7.13 kcal Atomic # 14 Polarization: 22.74 SS G_CDS: -5.02 Total: 17.71 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -34.20 -7.17 -41.37 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054175978.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -121.721 kcal (2) G-P(sol) polarization free energy of solvation -34.203 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -155.924 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.166 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.369 kcal (6) G-S(sol) free energy of system = (1) + (5) -163.090 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds