Wall clock time and date at job start Tue Mar 31 2020 18:04:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09005 * 109.47073 * 2 1 4 4 C 1.50699 * 109.46953 * 240.00431 * 2 1 3 5 5 O 1.21284 * 120.00102 * 331.02816 * 4 2 1 6 6 N 1.34777 * 120.00179 * 151.03396 * 4 2 1 7 7 C 1.46930 * 120.69858 * 355.17762 * 6 4 2 8 8 C 1.53192 * 108.91802 * 125.85310 * 7 6 4 9 9 C 1.53164 * 109.27431 * 55.23688 * 8 7 6 10 10 C 1.52245 * 109.62408 * 299.83735 * 9 8 7 11 11 C 1.54502 * 110.24975 * 297.03903 * 10 9 8 12 12 C 1.55035 * 101.52281 * 276.23502 * 11 10 9 13 13 N 1.47487 * 104.89810 * 323.64417 * 12 11 10 14 14 C 1.36936 * 125.65466 * 204.02779 * 13 12 11 15 15 H 1.07999 * 119.99624 * 179.97438 * 14 13 12 16 16 C 1.38809 * 120.00690 * 359.97429 * 14 13 12 17 17 N 1.31626 * 119.99571 * 0.02562 * 16 14 13 18 18 Si 1.86798 * 120.00245 * 179.97438 * 16 14 13 19 19 H 1.48506 * 109.47159 * 60.00409 * 18 16 14 20 20 H 1.48503 * 109.46945 * 180.02562 * 18 16 14 21 21 H 1.48500 * 109.47314 * 300.00408 * 18 16 14 22 22 C 1.47189 * 108.67903 * 24.00615 * 13 12 11 23 23 C 1.47082 * 120.69900 * 175.19569 * 6 4 2 24 24 C 1.53001 * 109.47267 * 120.00209 * 2 1 3 25 25 F 1.39897 * 109.47199 * 179.97438 * 24 2 1 26 26 F 1.39897 * 109.47123 * 299.99907 * 24 2 1 27 27 F 1.39908 * 109.46750 * 59.99788 * 24 2 1 28 28 H 1.09002 * 109.47439 * 64.97466 * 1 2 3 29 29 H 1.08992 * 109.47367 * 184.97817 * 1 2 3 30 30 H 1.09003 * 109.46954 * 304.98075 * 1 2 3 31 31 H 1.08994 * 109.56338 * 6.02206 * 7 6 4 32 32 H 1.09002 * 109.56285 * 245.67977 * 7 6 4 33 33 H 1.09001 * 109.50315 * 295.29114 * 8 7 6 34 34 H 1.09003 * 109.53634 * 175.19066 * 8 7 6 35 35 H 1.08998 * 109.44436 * 59.87104 * 9 8 7 36 36 H 1.09000 * 109.44489 * 179.80195 * 9 8 7 37 37 H 1.08995 * 111.01767 * 34.29318 * 11 10 9 38 38 H 1.08994 * 111.01847 * 158.17693 * 11 10 9 39 39 H 1.08995 * 110.35256 * 204.79115 * 12 11 10 40 40 H 1.09000 * 110.44380 * 82.54254 * 12 11 10 41 41 H 0.96999 * 119.99854 * 180.02562 * 17 16 14 42 42 H 1.09004 * 109.91058 * 239.12649 * 22 13 12 43 43 H 1.09002 * 109.90944 * 117.86082 * 22 13 12 44 44 H 1.08993 * 109.58148 * 352.23177 * 23 6 4 45 45 H 1.09008 * 109.57191 * 112.61905 * 23 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2305 5 8 1.3680 -1.5899 -1.7366 6 7 3.2197 -0.3683 -1.7686 7 6 3.9879 0.7637 -1.2326 8 6 5.4004 0.2844 -0.8835 9 6 6.0352 -0.3608 -2.1190 10 6 5.1945 -1.5495 -2.5641 11 6 5.1741 -2.6324 -1.4623 12 6 6.4923 -3.3949 -1.7530 13 7 6.6134 -3.3961 -3.2229 14 6 7.3211 -4.3038 -3.9648 15 1 7.3475 -4.2181 -5.0410 16 6 8.0045 -5.3340 -3.3336 17 7 7.9719 -5.4387 -2.0219 18 14 8.9694 -6.5726 -4.3458 19 1 10.0211 -5.8665 -5.1209 20 1 9.6030 -7.5650 -3.4409 21 1 8.0507 -7.2711 -5.2803 22 6 5.8468 -2.2601 -3.7600 23 6 3.7735 -1.1200 -2.9050 24 6 2.0400 -0.7213 1.2492 25 9 3.4390 -0.7218 1.2489 26 9 1.5737 -0.0619 2.3915 27 9 1.5736 -2.0403 1.2491 28 1 -0.3634 0.4347 -0.9312 29 1 -0.3634 -1.0237 0.0892 30 1 -0.3633 0.5892 0.8420 31 1 3.4994 1.1442 -0.3356 32 1 4.0452 1.5533 -1.9818 33 1 5.3475 -0.4473 -0.0773 34 1 6.0052 1.1336 -0.5652 35 1 6.0845 0.3708 -2.9255 36 1 7.0419 -0.6998 -1.8746 37 1 5.1941 -2.1813 -0.4703 38 1 4.3105 -3.2879 -1.5744 39 1 6.4304 -4.4161 -1.3769 40 1 7.3391 -2.8765 -1.3033 41 1 8.4498 -6.1584 -1.5808 42 1 5.0772 -2.6210 -4.4423 43 1 6.5153 -1.5739 -4.2800 44 1 3.1607 -2.0014 -3.0935 45 1 3.7863 -0.4854 -3.7912 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001054175979.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:04:10 Heat of formation + Delta-G solvation = -159.973395 kcal Electronic energy + Delta-G solvation = -31761.423389 eV Core-core repulsion = 27171.601858 eV Total energy + Delta-G solvation = -4589.821530 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.161 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -50.32654 -47.83819 -47.73879 -40.65522 -38.67607 -35.97959 -34.24243 -32.97094 -31.92575 -30.13644 -28.63122 -26.88607 -25.77732 -25.70049 -23.91269 -22.85630 -22.13711 -20.21831 -19.69771 -18.86514 -18.54065 -18.23873 -17.69907 -17.15713 -16.80167 -15.79317 -15.18657 -15.00887 -14.78456 -14.59111 -14.54403 -14.18123 -14.11719 -13.97625 -13.87981 -13.83802 -13.52742 -13.36990 -13.30456 -13.16950 -12.72365 -12.54555 -12.25005 -12.14895 -11.93835 -11.63671 -11.51970 -11.11420 -10.98105 -10.87581 -10.78281 -10.53960 -10.18865 -10.10363 -10.02044 -9.81256 -9.66807 -9.42965 -8.61711 -8.59303 -6.78836 -5.60758 -3.02494 1.94435 2.69521 2.75374 3.42985 3.47088 3.48527 3.51385 3.68002 3.75670 4.25330 4.44901 4.50204 4.52239 4.75385 4.94301 5.00539 5.13123 5.21927 5.27171 5.30427 5.34559 5.51405 5.54797 5.69132 5.74547 5.82918 5.89364 5.91988 6.00369 6.09852 6.30534 6.40104 6.41018 6.46898 6.63073 6.74552 6.84060 6.95288 7.22650 7.57208 7.66613 7.91378 7.91477 8.41168 9.26208 9.87249 10.52793 11.42777 Molecular weight = 334.16amu Principal moments of inertia in cm(-1) A = 0.019828 B = 0.003490 C = 0.003371 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1411.811465 B = 8021.005353 C = 8303.978390 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.165 4.165 3 H 0.134 0.866 4 C 0.518 3.482 5 O -0.515 6.515 6 N -0.596 5.596 7 C 0.104 3.896 8 C -0.138 4.138 9 C -0.099 4.099 10 C -0.085 4.085 11 C -0.132 4.132 12 C 0.156 3.844 13 N -0.602 5.602 14 C -0.223 4.223 15 H 0.076 0.924 16 C -0.011 4.011 17 N -0.922 5.922 18 Si 0.914 3.086 19 H -0.286 1.286 20 H -0.290 1.290 21 H -0.285 1.285 22 C 0.150 3.850 23 C 0.131 3.869 24 C 0.464 3.536 25 F -0.173 7.173 26 F -0.179 7.179 27 F -0.170 7.170 28 H 0.081 0.919 29 H 0.081 0.919 30 H 0.076 0.924 31 H 0.076 0.924 32 H 0.074 0.926 33 H 0.078 0.922 34 H 0.073 0.927 35 H 0.059 0.941 36 H 0.075 0.925 37 H 0.059 0.941 38 H 0.057 0.943 39 H 0.103 0.897 40 H 0.011 0.989 41 H 0.252 0.748 42 H 0.024 0.976 43 H 0.024 0.976 44 H 0.094 0.906 45 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.792 17.560 6.441 22.660 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.187 4.187 3 H 0.151 0.849 4 C 0.303 3.697 5 O -0.390 6.390 6 N -0.328 5.328 7 C -0.019 4.019 8 C -0.176 4.176 9 C -0.137 4.137 10 C -0.086 4.086 11 C -0.170 4.170 12 C 0.031 3.969 13 N -0.328 5.328 14 C -0.351 4.351 15 H 0.094 0.906 16 C -0.206 4.206 17 N -0.570 5.570 18 Si 0.744 3.256 19 H -0.213 1.213 20 H -0.216 1.216 21 H -0.212 1.212 22 C 0.024 3.976 23 C 0.009 3.991 24 C 0.409 3.591 25 F -0.154 7.154 26 F -0.160 7.160 27 F -0.151 7.151 28 H 0.100 0.900 29 H 0.100 0.900 30 H 0.095 0.905 31 H 0.095 0.905 32 H 0.092 0.908 33 H 0.097 0.903 34 H 0.092 0.908 35 H 0.077 0.923 36 H 0.094 0.906 37 H 0.077 0.923 38 H 0.075 0.925 39 H 0.121 0.879 40 H 0.028 0.972 41 H 0.062 0.938 42 H 0.042 0.958 43 H 0.041 0.959 44 H 0.113 0.887 45 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -12.994 16.864 6.212 22.177 hybrid contribution 0.804 -0.561 -0.231 1.007 sum -12.190 16.303 5.981 21.217 Atomic orbital electron populations 1.21709 0.88924 1.05025 1.04056 1.22739 1.01940 1.02632 0.91421 0.84871 1.19675 0.81629 0.83632 0.84754 1.90754 1.55750 1.30720 1.61747 1.48108 1.18866 1.32043 1.33778 1.21874 0.93061 0.88144 0.98778 1.22035 0.94511 1.01303 0.99780 1.21345 0.99795 0.96074 0.96453 1.21341 0.93184 0.95808 0.98250 1.23029 1.01219 0.96494 0.96263 1.21909 0.90031 1.01024 0.83939 1.44515 1.57506 1.28345 1.02466 1.19026 1.22406 1.03537 0.90153 0.90607 1.24775 1.00838 0.99172 0.95816 1.69811 1.46736 1.33793 1.06692 0.86167 0.79694 0.80942 0.78768 1.21278 1.21606 1.21187 1.21140 0.93671 0.89839 0.92988 1.21622 0.94396 0.96596 0.86483 1.20020 0.75942 0.78217 0.84904 1.93242 1.29146 1.96351 1.96660 1.93192 1.88515 1.80754 1.53563 1.93256 1.88276 1.36905 1.96658 0.89960 0.90006 0.90520 0.90540 0.90821 0.90330 0.90820 0.92256 0.90625 0.92291 0.92474 0.87946 0.97151 0.93752 0.95845 0.95865 0.88718 0.91492 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.14 8.45 37.16 0.31 -0.83 16 2 C -0.16 -1.57 2.07 -91.77 -0.19 -1.76 16 3 H 0.13 0.84 6.03 -51.93 -0.31 0.52 16 4 C 0.52 6.86 6.24 -10.99 -0.07 6.79 16 5 O -0.51 -8.70 15.71 5.55 0.09 -8.61 16 6 N -0.60 -7.47 2.82 -173.17 -0.49 -7.96 16 7 C 0.10 0.98 5.48 -3.71 -0.02 0.96 16 8 C -0.14 -1.56 5.82 -26.55 -0.15 -1.72 16 9 C -0.10 -1.41 4.55 -27.03 -0.12 -1.53 16 10 C -0.08 -1.42 0.55 -154.12 -0.09 -1.51 16 11 C -0.13 -2.60 5.73 -24.87 -0.14 -2.74 16 12 C 0.16 3.84 5.57 -2.43 -0.01 3.83 16 13 N -0.60 -15.51 3.40 -170.23 -0.58 -16.09 16 14 C -0.22 -6.28 10.28 -15.06 -0.15 -6.43 16 15 H 0.08 2.06 7.83 -52.49 -0.41 1.64 16 16 C -0.01 -0.30 5.49 -17.43 -0.10 -0.40 16 17 N -0.92 -27.28 10.09 55.49 0.56 -26.72 16 18 Si 0.91 22.36 29.55 -169.99 -5.02 17.33 16 19 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 20 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 21 H -0.29 -6.90 7.11 56.52 0.40 -6.49 16 22 C 0.15 3.09 6.43 -3.33 -0.02 3.07 16 23 C 0.13 1.92 4.96 -4.08 -0.02 1.90 16 24 C 0.46 5.24 2.68 37.16 0.10 5.34 16 25 F -0.17 -2.12 14.24 2.25 0.03 -2.09 16 26 F -0.18 -1.81 16.89 2.25 0.04 -1.77 16 27 F -0.17 -2.36 16.42 2.25 0.04 -2.33 16 28 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 29 H 0.08 0.81 7.54 -51.93 -0.39 0.42 16 30 H 0.08 0.46 7.94 -51.93 -0.41 0.05 16 31 H 0.08 0.56 4.84 -51.93 -0.25 0.31 16 32 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.08 1.03 4.90 -51.93 -0.25 0.78 16 34 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 35 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 36 H 0.08 1.26 7.49 -51.93 -0.39 0.87 16 37 H 0.06 1.09 6.00 -51.93 -0.31 0.77 16 38 H 0.06 1.22 7.90 -51.93 -0.41 0.81 16 39 H 0.10 2.90 5.88 -51.93 -0.31 2.59 16 40 H 0.01 0.27 7.76 -51.93 -0.40 -0.13 16 41 H 0.25 7.26 8.31 -40.82 -0.34 6.92 16 42 H 0.02 0.49 7.80 -51.93 -0.40 0.08 16 43 H 0.02 0.47 7.83 -51.93 -0.41 0.07 16 44 H 0.09 1.62 6.90 -51.93 -0.36 1.26 16 45 H 0.07 0.87 8.14 -51.92 -0.42 0.44 16 LS Contribution 350.39 15.07 5.28 5.28 Total: -1.00 -32.38 350.39 -7.00 -39.38 By element: Atomic # 1 Polarization: 4.87 SS G_CDS: -6.27 Total: -1.40 kcal Atomic # 6 Polarization: 5.65 SS G_CDS: -0.68 Total: 4.97 kcal Atomic # 7 Polarization: -50.26 SS G_CDS: -0.51 Total: -50.77 kcal Atomic # 8 Polarization: -8.70 SS G_CDS: 0.09 Total: -8.61 kcal Atomic # 9 Polarization: -6.30 SS G_CDS: 0.11 Total: -6.19 kcal Atomic # 14 Polarization: 22.36 SS G_CDS: -5.02 Total: 17.33 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -32.38 -7.00 -39.38 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054175979.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -120.589 kcal (2) G-P(sol) polarization free energy of solvation -32.380 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -152.969 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.004 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.384 kcal (6) G-S(sol) free energy of system = (1) + (5) -159.973 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds