Wall clock time and date at job start Tue Mar 31 2020 18:04:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09005 * 109.47073 * 2 1 4 4 C 1.50699 * 109.46953 * 240.00431 * 2 1 3 5 5 O 1.21284 * 120.00102 * 331.02816 * 4 2 1 6 6 N 1.34777 * 120.00179 * 151.03396 * 4 2 1 7 7 C 1.46930 * 120.69858 * 355.17762 * 6 4 2 8 8 C 1.53192 * 108.91802 * 125.85310 * 7 6 4 9 9 C 1.53164 * 109.27431 * 55.23688 * 8 7 6 10 10 C 1.52245 * 109.62408 * 299.83735 * 9 8 7 11 11 C 1.54502 * 110.24975 * 297.03903 * 10 9 8 12 12 C 1.55035 * 101.52281 * 276.23502 * 11 10 9 13 13 N 1.47487 * 104.89810 * 323.64417 * 12 11 10 14 14 C 1.36936 * 125.65466 * 204.02779 * 13 12 11 15 15 H 1.07999 * 119.99624 * 179.97438 * 14 13 12 16 16 C 1.38809 * 120.00690 * 359.97429 * 14 13 12 17 17 N 1.31626 * 119.99571 * 0.02562 * 16 14 13 18 18 Si 1.86798 * 120.00245 * 179.97438 * 16 14 13 19 19 H 1.48506 * 109.47159 * 60.00409 * 18 16 14 20 20 H 1.48503 * 109.46945 * 180.02562 * 18 16 14 21 21 H 1.48500 * 109.47314 * 300.00408 * 18 16 14 22 22 C 1.47189 * 108.67903 * 24.00615 * 13 12 11 23 23 C 1.47082 * 120.69900 * 175.19569 * 6 4 2 24 24 C 1.53001 * 109.47267 * 120.00209 * 2 1 3 25 25 F 1.39897 * 109.47199 * 179.97438 * 24 2 1 26 26 F 1.39897 * 109.47123 * 299.99907 * 24 2 1 27 27 F 1.39908 * 109.46750 * 59.99788 * 24 2 1 28 28 H 1.09002 * 109.47439 * 64.97466 * 1 2 3 29 29 H 1.08992 * 109.47367 * 184.97817 * 1 2 3 30 30 H 1.09003 * 109.46954 * 304.98075 * 1 2 3 31 31 H 1.08994 * 109.56338 * 6.02206 * 7 6 4 32 32 H 1.09002 * 109.56285 * 245.67977 * 7 6 4 33 33 H 1.09001 * 109.50315 * 295.29114 * 8 7 6 34 34 H 1.09003 * 109.53634 * 175.19066 * 8 7 6 35 35 H 1.08998 * 109.44436 * 59.87104 * 9 8 7 36 36 H 1.09000 * 109.44489 * 179.80195 * 9 8 7 37 37 H 1.08995 * 111.01767 * 34.29318 * 11 10 9 38 38 H 1.08994 * 111.01847 * 158.17693 * 11 10 9 39 39 H 1.08995 * 110.35256 * 204.79115 * 12 11 10 40 40 H 1.09000 * 110.44380 * 82.54254 * 12 11 10 41 41 H 0.96999 * 119.99854 * 180.02562 * 17 16 14 42 42 H 1.09004 * 109.91058 * 239.12649 * 22 13 12 43 43 H 1.09002 * 109.90944 * 117.86082 * 22 13 12 44 44 H 1.08993 * 109.58148 * 352.23177 * 23 6 4 45 45 H 1.09008 * 109.57191 * 112.61905 * 23 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2305 5 8 1.3680 -1.5899 -1.7366 6 7 3.2197 -0.3683 -1.7686 7 6 3.9879 0.7637 -1.2326 8 6 5.4004 0.2844 -0.8835 9 6 6.0352 -0.3608 -2.1190 10 6 5.1945 -1.5495 -2.5641 11 6 5.1741 -2.6324 -1.4623 12 6 6.4923 -3.3949 -1.7530 13 7 6.6134 -3.3961 -3.2229 14 6 7.3211 -4.3038 -3.9648 15 1 7.3475 -4.2181 -5.0410 16 6 8.0045 -5.3340 -3.3336 17 7 7.9719 -5.4387 -2.0219 18 14 8.9694 -6.5726 -4.3458 19 1 10.0211 -5.8665 -5.1209 20 1 9.6030 -7.5650 -3.4409 21 1 8.0507 -7.2711 -5.2803 22 6 5.8468 -2.2601 -3.7600 23 6 3.7735 -1.1200 -2.9050 24 6 2.0400 -0.7213 1.2492 25 9 3.4390 -0.7218 1.2489 26 9 1.5737 -0.0619 2.3915 27 9 1.5736 -2.0403 1.2491 28 1 -0.3634 0.4347 -0.9312 29 1 -0.3634 -1.0237 0.0892 30 1 -0.3633 0.5892 0.8420 31 1 3.4994 1.1442 -0.3356 32 1 4.0452 1.5533 -1.9818 33 1 5.3475 -0.4473 -0.0773 34 1 6.0052 1.1336 -0.5652 35 1 6.0845 0.3708 -2.9255 36 1 7.0419 -0.6998 -1.8746 37 1 5.1941 -2.1813 -0.4703 38 1 4.3105 -3.2879 -1.5744 39 1 6.4304 -4.4161 -1.3769 40 1 7.3391 -2.8765 -1.3033 41 1 8.4498 -6.1584 -1.5808 42 1 5.0772 -2.6210 -4.4423 43 1 6.5153 -1.5739 -4.2800 44 1 3.1607 -2.0014 -3.0935 45 1 3.7863 -0.4854 -3.7912 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001054175979.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:04:09 Heat of formation + Delta-G solvation = -179.899040 kcal Electronic energy + Delta-G solvation = -31762.287430 eV Core-core repulsion = 27171.601858 eV Total energy + Delta-G solvation = -4590.685571 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.161 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -51.22612 -48.71400 -48.68945 -41.76987 -40.01489 -37.38613 -35.25024 -34.52370 -33.15221 -31.80451 -30.42659 -27.81165 -27.32961 -26.70273 -25.56102 -23.89380 -23.31259 -22.02494 -20.76233 -19.77563 -19.67223 -19.39880 -18.73737 -18.59041 -18.09118 -17.06880 -16.65295 -16.38328 -16.10543 -15.75685 -15.55586 -15.47351 -15.12225 -15.06095 -14.84291 -14.82053 -14.80695 -14.63095 -14.36658 -14.12744 -14.04727 -13.78437 -13.58150 -13.34921 -13.14959 -12.92040 -12.88475 -12.75069 -12.51950 -12.24922 -12.16978 -12.08145 -11.90523 -11.71244 -11.49760 -11.40332 -11.12901 -10.91941 -10.73998 -9.67278 -8.89198 -7.77800 -5.22288 1.00142 1.44423 1.48310 1.54566 1.74834 1.85673 2.48977 2.67877 2.85539 2.90642 3.31130 3.40454 3.59857 3.66292 3.72523 3.79206 3.84164 3.95294 4.13757 4.24881 4.30493 4.46565 4.55515 4.61532 4.65671 4.70476 4.71422 4.78330 4.85784 4.89231 4.92645 4.97675 5.14318 5.16696 5.21288 5.40446 5.44890 5.50077 5.51867 5.62004 5.80356 6.25693 6.29131 6.92844 7.09302 7.77695 8.42532 9.24033 Molecular weight = 334.16amu Principal moments of inertia in cm(-1) A = 0.019828 B = 0.003490 C = 0.003371 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1411.811465 B = 8021.005353 C = 8303.978390 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.153 4.153 3 H 0.178 0.822 4 C 0.512 3.488 5 O -0.561 6.561 6 N -0.595 5.595 7 C 0.100 3.900 8 C -0.134 4.134 9 C -0.096 4.096 10 C -0.070 4.070 11 C -0.114 4.114 12 C 0.163 3.837 13 N -0.625 5.625 14 C -0.240 4.240 15 H 0.082 0.918 16 C -0.068 4.068 17 N -0.951 5.951 18 Si 0.981 3.019 19 H -0.275 1.275 20 H -0.294 1.294 21 H -0.278 1.278 22 C 0.144 3.856 23 C 0.138 3.862 24 C 0.460 3.540 25 F -0.180 7.180 26 F -0.169 7.169 27 F -0.192 7.192 28 H 0.092 0.908 29 H 0.056 0.944 30 H 0.104 0.896 31 H 0.106 0.894 32 H 0.108 0.892 33 H 0.056 0.944 34 H 0.106 0.894 35 H 0.086 0.914 36 H 0.045 0.955 37 H 0.074 0.926 38 H 0.034 0.966 39 H 0.060 0.940 40 H -0.010 1.010 41 H 0.246 0.754 42 H 0.022 0.978 43 H 0.035 0.965 44 H 0.064 0.936 45 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.457 21.014 6.169 25.705 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.175 4.175 3 H 0.195 0.805 4 C 0.298 3.702 5 O -0.439 6.439 6 N -0.326 5.326 7 C -0.021 4.021 8 C -0.172 4.172 9 C -0.133 4.133 10 C -0.071 4.071 11 C -0.152 4.152 12 C 0.038 3.962 13 N -0.351 5.351 14 C -0.369 4.369 15 H 0.100 0.900 16 C -0.261 4.261 17 N -0.601 5.601 18 Si 0.809 3.191 19 H -0.201 1.201 20 H -0.220 1.220 21 H -0.204 1.204 22 C 0.018 3.982 23 C 0.016 3.984 24 C 0.405 3.595 25 F -0.161 7.161 26 F -0.150 7.150 27 F -0.173 7.173 28 H 0.110 0.890 29 H 0.075 0.925 30 H 0.122 0.878 31 H 0.124 0.876 32 H 0.126 0.874 33 H 0.074 0.926 34 H 0.124 0.876 35 H 0.105 0.895 36 H 0.063 0.937 37 H 0.092 0.908 38 H 0.052 0.948 39 H 0.079 0.921 40 H 0.008 0.992 41 H 0.055 0.945 42 H 0.040 0.960 43 H 0.053 0.947 44 H 0.082 0.918 45 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -13.663 20.370 5.937 25.236 hybrid contribution 1.027 -1.641 -0.139 1.941 sum -12.637 18.728 5.798 23.325 Atomic orbital electron populations 1.21759 0.87909 1.04158 1.05799 1.22815 1.02710 1.03805 0.88207 0.80526 1.20311 0.81397 0.83097 0.85377 1.90739 1.57171 1.32725 1.63243 1.48204 1.18927 1.32422 1.33068 1.22207 0.91372 0.87434 1.01051 1.22013 0.96186 1.01669 0.97308 1.21320 0.97698 0.95397 0.98924 1.21251 0.95144 0.95666 0.95015 1.22771 0.97280 0.96759 0.98413 1.21602 0.91773 0.99041 0.83772 1.44811 1.57807 1.29588 1.02886 1.19455 1.22457 1.04189 0.90824 0.90011 1.25656 1.02276 1.01201 0.96931 1.70093 1.47529 1.34190 1.08255 0.85111 0.78386 0.78350 0.77235 1.20097 1.22029 1.20435 1.21366 0.93369 0.88814 0.94608 1.21345 0.91991 0.96578 0.88523 1.20327 0.75626 0.77560 0.85992 1.93231 1.29783 1.96327 1.96761 1.93209 1.88338 1.80316 1.53172 1.93218 1.88517 1.38795 1.96816 0.88950 0.92460 0.87773 0.87625 0.87430 0.92571 0.87595 0.89520 0.93659 0.90806 0.94757 0.92149 0.99162 0.94478 0.96032 0.94739 0.91776 0.88699 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.92 8.45 71.98 0.61 -1.31 16 2 C -0.15 -2.45 2.07 -11.54 -0.02 -2.48 16 3 H 0.18 1.22 6.03 -2.38 -0.01 1.20 16 4 C 0.51 12.60 6.24 87.66 0.55 13.15 16 5 O -0.56 -18.97 15.71 -3.04 -0.05 -19.02 16 6 N -0.59 -13.29 2.82 -820.19 -2.32 -15.61 16 7 C 0.10 1.40 5.48 86.36 0.47 1.87 16 8 C -0.13 -2.54 5.82 30.71 0.18 -2.36 16 9 C -0.10 -2.51 4.55 30.40 0.14 -2.37 16 10 C -0.07 -2.29 0.55 -51.93 -0.03 -2.32 16 11 C -0.11 -4.65 5.73 31.80 0.18 -4.47 16 12 C 0.16 8.50 5.57 86.89 0.48 8.98 16 13 N -0.62 -33.30 3.40 -692.48 -2.36 -35.65 16 14 C -0.24 -13.90 10.28 84.03 0.86 -13.03 16 15 H 0.08 4.49 7.83 -2.91 -0.02 4.47 16 16 C -0.07 -4.00 5.49 84.86 0.47 -3.54 16 17 N -0.95 -58.87 10.09 21.65 0.22 -58.65 16 18 Si 0.98 46.94 29.55 68.60 2.03 48.97 16 19 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 20 H -0.29 -14.14 7.11 99.48 0.71 -13.43 16 21 H -0.28 -12.89 7.11 99.48 0.71 -12.18 16 22 C 0.14 5.95 6.43 86.47 0.56 6.50 16 23 C 0.14 3.86 4.96 86.04 0.43 4.29 16 24 C 0.46 9.48 2.68 71.98 0.19 9.67 16 25 F -0.18 -4.06 14.24 44.97 0.64 -3.42 16 26 F -0.17 -2.97 16.89 44.97 0.76 -2.21 16 27 F -0.19 -5.35 16.42 44.97 0.74 -4.61 16 28 H 0.09 1.11 8.14 -2.39 -0.02 1.09 16 29 H 0.06 1.09 7.54 -2.39 -0.02 1.07 16 30 H 0.10 0.86 7.94 -2.39 -0.02 0.84 16 31 H 0.11 0.90 4.84 -2.39 -0.01 0.89 16 32 H 0.11 0.92 8.14 -2.39 -0.02 0.90 16 33 H 0.06 1.35 4.90 -2.39 -0.01 1.33 16 34 H 0.11 1.41 8.14 -2.39 -0.02 1.39 16 35 H 0.09 1.83 8.14 -2.39 -0.02 1.81 16 36 H 0.04 1.47 7.49 -2.39 -0.02 1.46 16 37 H 0.07 2.78 6.00 -2.39 -0.01 2.77 16 38 H 0.03 1.53 7.90 -2.39 -0.02 1.52 16 39 H 0.06 3.66 5.88 -2.39 -0.01 3.65 16 40 H -0.01 -0.52 7.76 -2.39 -0.02 -0.54 16 41 H 0.25 14.80 8.31 -92.71 -0.77 14.03 16 42 H 0.02 0.90 7.80 -2.39 -0.02 0.88 16 43 H 0.03 1.36 7.83 -2.39 -0.02 1.34 16 44 H 0.06 2.22 6.90 -2.39 -0.02 2.20 16 45 H 0.09 2.16 8.14 -2.38 -0.02 2.14 16 Total: -1.00 -76.38 350.39 5.75 -70.64 By element: Atomic # 1 Polarization: 5.96 SS G_CDS: 1.02 Total: 6.98 kcal Atomic # 6 Polarization: 7.53 SS G_CDS: 5.06 Total: 12.59 kcal Atomic # 7 Polarization: -105.46 SS G_CDS: -4.45 Total: -109.91 kcal Atomic # 8 Polarization: -18.97 SS G_CDS: -0.05 Total: -19.02 kcal Atomic # 9 Polarization: -12.38 SS G_CDS: 2.14 Total: -10.24 kcal Atomic # 14 Polarization: 46.94 SS G_CDS: 2.03 Total: 48.97 kcal Total: -76.38 5.75 -70.64 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054175979.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -109.264 kcal (2) G-P(sol) polarization free energy of solvation -76.380 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -185.644 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.745 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.635 kcal (6) G-S(sol) free energy of system = (1) + (5) -179.899 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds