Wall clock time and date at job start Tue Mar 31 2020 18:09:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 109.47502 * 2 1 4 4 C 1.50706 * 109.47238 * 119.99835 * 2 1 3 5 5 O 1.21274 * 120.00042 * 119.72042 * 4 2 1 6 6 N 1.34777 * 119.99766 * 299.99577 * 4 2 1 7 7 C 1.46496 * 120.00266 * 179.97438 * 6 4 2 8 8 C 1.53002 * 109.47425 * 180.02562 * 7 6 4 9 9 C 1.53516 * 111.15538 * 299.11334 * 8 7 6 10 10 C 1.54184 * 106.58898 * 240.87917 * 9 8 7 11 11 C 1.54739 * 104.35005 * 335.43384 * 10 9 8 12 12 C 1.54665 * 111.22675 * 180.02562 * 8 7 6 13 13 H 1.09005 * 112.40732 * 19.49139 * 12 8 7 14 14 N 1.47252 * 106.10191 * 256.40386 * 12 8 7 15 15 C 1.36944 * 126.52357 * 150.11390 * 14 12 8 16 16 H 1.08000 * 119.99499 * 359.97438 * 15 14 12 17 17 C 1.38807 * 120.00173 * 180.02562 * 15 14 12 18 18 N 1.31617 * 120.00320 * 359.97438 * 17 15 14 19 19 Si 1.86806 * 119.99822 * 179.97438 * 17 15 14 20 20 H 1.48492 * 109.46948 * 359.97438 * 19 17 15 21 21 H 1.48505 * 109.46947 * 119.99803 * 19 17 15 22 22 H 1.48499 * 109.47048 * 239.99781 * 19 17 15 23 23 C 1.47157 * 106.96166 * 330.07726 * 14 12 8 24 24 C 1.53672 * 111.17489 * 62.60264 * 8 7 6 25 25 C 1.52999 * 109.47317 * 239.99354 * 2 1 3 26 26 F 1.39897 * 109.47114 * 300.00482 * 25 2 1 27 27 F 1.39905 * 109.46699 * 60.00096 * 25 2 1 28 28 F 1.39895 * 109.47493 * 179.97438 * 25 2 1 29 29 H 1.08996 * 109.46952 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.46832 * 300.00478 * 1 2 3 31 31 H 1.09002 * 109.47153 * 60.00287 * 1 2 3 32 32 H 0.96999 * 120.00043 * 0.02562 * 6 4 2 33 33 H 1.09004 * 109.47212 * 300.00463 * 7 6 4 34 34 H 1.09000 * 109.46684 * 60.00307 * 7 6 4 35 35 H 1.09004 * 110.04247 * 0.98703 * 9 8 7 36 36 H 1.08998 * 110.03999 * 122.43512 * 9 8 7 37 37 H 1.09001 * 110.79859 * 216.50310 * 10 9 8 38 38 H 1.08999 * 110.10982 * 94.02461 * 10 9 8 39 39 H 1.09000 * 110.64892 * 278.62549 * 11 10 9 40 40 H 1.08992 * 110.65122 * 155.53347 * 11 10 9 41 41 H 0.96997 * 120.00166 * 180.02562 * 18 17 15 42 42 H 1.09000 * 110.09675 * 150.06655 * 23 14 12 43 43 H 1.09004 * 110.09241 * 271.59931 * 23 14 12 44 44 H 1.09001 * 110.22978 * 241.06738 * 24 8 7 45 45 H 1.09004 * 110.22829 * 3.02137 * 24 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7104 1.2305 5 8 2.7254 -1.6994 1.1193 6 7 1.7068 -0.2498 2.4546 7 6 2.1946 -0.9406 3.6508 8 6 1.6843 -0.2195 4.9000 9 6 2.1926 1.2281 4.9507 10 6 3.0333 1.3548 6.2370 11 6 2.4829 0.2461 7.1655 12 6 2.1773 -0.9166 6.1897 13 1 3.0418 -1.5563 6.0117 14 7 1.0247 -1.6685 6.7136 15 6 1.0704 -2.8289 7.4395 16 1 2.0226 -3.2792 7.6783 17 6 -0.1069 -3.4267 7.8673 18 7 -1.2673 -2.8782 7.5758 19 14 -0.0445 -5.0100 8.8568 20 1 1.3702 -5.4185 9.0483 21 1 -0.6808 -4.7916 10.1808 22 1 -0.7734 -6.0786 8.1275 23 6 -0.1856 -0.9354 6.3097 24 6 0.1496 -0.2526 4.9720 25 6 2.0400 -0.7214 -1.2491 26 9 1.5736 -2.0403 -1.2491 27 9 1.5737 -0.0619 -2.3915 28 9 3.4390 -0.7209 -1.2495 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 1.1489 0.5387 2.5436 33 1 1.8309 -1.9682 3.6507 34 1 3.2846 -0.9410 3.6509 35 1 2.7995 1.4420 4.0708 36 1 1.3504 1.9182 5.0007 37 1 2.8984 2.3358 6.6924 38 1 4.0860 1.1793 6.0155 39 1 1.5726 0.5791 7.6641 40 1 3.2351 -0.0525 7.8955 41 1 -2.0900 -3.2958 7.8751 42 1 -1.0169 -1.6282 6.1787 43 1 -0.4377 -0.1863 7.0604 44 1 -0.2505 0.7611 4.9553 45 1 -0.2543 -0.8318 4.1416 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001107507208.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:09:43 Heat of formation + Delta-G solvation = -176.244382 kcal Electronic energy + Delta-G solvation = -30611.208169 eV Core-core repulsion = 26020.681076 eV Total energy + Delta-G solvation = -4590.527093 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.161 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -50.21380 -47.74087 -47.60637 -40.28166 -39.14663 -34.92932 -34.35431 -33.87845 -31.62612 -30.32834 -28.11044 -26.86156 -26.70713 -24.81081 -23.78797 -23.05342 -20.76137 -20.53263 -19.65489 -19.01113 -18.61221 -18.32536 -17.70680 -17.03479 -16.73448 -15.70274 -15.37989 -15.04876 -14.72027 -14.56009 -14.44042 -14.21172 -14.06755 -13.84680 -13.76617 -13.70144 -13.63681 -13.47746 -13.39654 -13.02265 -12.64946 -12.57951 -12.24730 -11.91950 -11.72948 -11.64554 -11.26420 -11.03198 -10.83828 -10.68640 -10.58360 -10.32897 -10.15886 -10.12092 -10.04037 -9.76385 -9.64918 -9.53925 -9.01868 -8.69763 -6.90800 -5.66721 -3.11869 2.36327 2.41637 2.95839 3.38077 3.44387 3.46209 3.49720 3.82700 3.97739 4.45338 4.48795 4.53921 4.66436 4.89305 4.92850 5.02547 5.11441 5.24151 5.45628 5.49886 5.55943 5.63928 5.69531 5.85009 5.88796 6.00626 6.04666 6.06012 6.11144 6.26348 6.30032 6.38895 6.41857 6.57786 6.63364 6.73763 6.83937 7.03364 7.35224 7.46370 7.60845 7.82475 8.02577 8.38343 9.18729 9.79618 10.45697 11.33664 Molecular weight = 334.16amu Principal moments of inertia in cm(-1) A = 0.015055 B = 0.003206 C = 0.002910 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1859.453344 B = 8732.600416 C = 9620.108795 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.163 4.163 3 H 0.137 0.863 4 C 0.517 3.483 5 O -0.522 6.522 6 N -0.711 5.711 7 C 0.141 3.859 8 C -0.087 4.087 9 C -0.111 4.111 10 C -0.123 4.123 11 C -0.135 4.135 12 C 0.169 3.831 13 H 0.065 0.935 14 N -0.588 5.588 15 C -0.219 4.219 16 H 0.079 0.921 17 C -0.011 4.011 18 N -0.921 5.921 19 Si 0.913 3.087 20 H -0.280 1.280 21 H -0.291 1.291 22 H -0.290 1.290 23 C 0.136 3.864 24 C -0.130 4.130 25 C 0.473 3.527 26 F -0.170 7.170 27 F -0.184 7.184 28 F -0.174 7.174 29 H 0.078 0.922 30 H 0.086 0.914 31 H 0.081 0.919 32 H 0.401 0.599 33 H 0.076 0.924 34 H 0.066 0.934 35 H 0.058 0.942 36 H 0.062 0.938 37 H 0.056 0.944 38 H 0.057 0.943 39 H 0.069 0.931 40 H 0.055 0.945 41 H 0.251 0.749 42 H 0.121 0.879 43 H 0.006 0.994 44 H 0.054 0.946 45 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.808 12.044 -14.459 19.199 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.186 4.186 3 H 0.155 0.845 4 C 0.300 3.700 5 O -0.397 6.397 6 N -0.362 5.362 7 C 0.019 3.981 8 C -0.089 4.089 9 C -0.149 4.149 10 C -0.161 4.161 11 C -0.176 4.176 12 C 0.059 3.941 13 H 0.083 0.917 14 N -0.309 5.309 15 C -0.347 4.347 16 H 0.097 0.903 17 C -0.206 4.206 18 N -0.570 5.570 19 Si 0.744 3.256 20 H -0.205 1.205 21 H -0.218 1.218 22 H -0.218 1.218 23 C 0.011 3.989 24 C -0.169 4.169 25 C 0.418 3.582 26 F -0.152 7.152 27 F -0.165 7.165 28 F -0.155 7.155 29 H 0.097 0.903 30 H 0.104 0.896 31 H 0.100 0.900 32 H 0.236 0.764 33 H 0.095 0.905 34 H 0.084 0.916 35 H 0.076 0.924 36 H 0.081 0.919 37 H 0.075 0.925 38 H 0.076 0.924 39 H 0.088 0.912 40 H 0.074 0.926 41 H 0.062 0.938 42 H 0.138 0.862 43 H 0.024 0.976 44 H 0.072 0.928 45 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 4.166 11.080 -14.414 18.652 hybrid contribution -0.179 -0.315 0.407 0.544 sum 3.987 10.765 -14.008 18.111 Atomic orbital electron populations 1.21860 0.89162 1.05050 1.04829 1.22652 1.01467 1.02921 0.91574 0.84473 1.19687 0.81103 0.84902 0.84293 1.90827 1.37381 1.25151 1.86373 1.45917 1.53067 1.31969 1.05288 1.21471 0.98458 0.96575 0.81613 1.22036 0.97192 0.94709 0.94995 1.22216 0.99405 0.95486 0.97800 1.22265 0.98839 0.98977 0.96002 1.23029 1.00472 0.95962 0.98104 1.21665 0.91683 0.91240 0.89491 0.91701 1.44576 1.00105 1.24644 1.61534 1.19156 0.93042 0.97578 1.24920 0.90346 1.24755 0.95207 0.99332 1.01282 1.69629 0.96720 1.39953 1.50651 0.86007 0.77357 0.82857 0.79354 1.20500 1.21794 1.21754 1.21867 0.93068 0.94874 0.89086 1.22721 0.92698 0.99762 1.01733 1.19769 0.75930 0.77999 0.84476 1.93219 1.88240 1.37061 1.96635 1.93177 1.88598 1.80892 1.53837 1.93214 1.29302 1.96363 1.96659 0.90320 0.89552 0.89985 0.76429 0.90528 0.91598 0.92375 0.91940 0.92530 0.92437 0.91214 0.92616 0.93765 0.86167 0.97622 0.92775 0.92585 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.08 8.85 37.16 0.33 -0.75 16 2 C -0.16 -1.48 2.71 -91.77 -0.25 -1.73 16 3 H 0.14 0.80 8.14 -51.93 -0.42 0.38 16 4 C 0.52 6.65 6.92 -10.98 -0.08 6.57 16 5 O -0.52 -9.07 14.83 5.56 0.08 -8.99 16 6 N -0.71 -8.36 4.73 -60.29 -0.29 -8.65 16 7 C 0.14 2.12 4.27 -4.04 -0.02 2.10 16 8 C -0.09 -1.34 0.65 -153.02 -0.10 -1.44 16 9 C -0.11 -1.39 5.62 -25.85 -0.15 -1.53 16 10 C -0.12 -1.63 6.83 -25.20 -0.17 -1.80 16 11 C -0.14 -2.32 6.37 -24.85 -0.16 -2.48 16 12 C 0.17 3.21 3.59 -65.68 -0.24 2.98 16 13 H 0.06 1.26 7.95 -51.93 -0.41 0.84 16 14 N -0.59 -14.01 2.98 -161.96 -0.48 -14.49 16 15 C -0.22 -5.85 10.33 -15.06 -0.16 -6.00 16 16 H 0.08 2.05 7.83 -52.49 -0.41 1.64 16 17 C -0.01 -0.29 5.49 -17.43 -0.10 -0.39 16 18 N -0.92 -25.98 10.06 55.49 0.56 -25.42 16 19 Si 0.91 21.76 29.55 -169.99 -5.02 16.73 16 20 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 21 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 22 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 23 C 0.14 3.09 5.68 -3.22 -0.02 3.07 16 24 C -0.13 -2.20 5.81 -25.92 -0.15 -2.35 16 25 C 0.47 5.40 2.42 37.16 0.09 5.49 16 26 F -0.17 -2.33 15.87 2.25 0.04 -2.30 16 27 F -0.18 -1.85 16.80 2.25 0.04 -1.82 16 28 F -0.17 -2.30 16.41 2.25 0.04 -2.26 16 29 H 0.08 0.68 7.80 -51.93 -0.41 0.28 16 30 H 0.09 0.48 7.56 -51.93 -0.39 0.09 16 31 H 0.08 0.45 7.80 -51.93 -0.41 0.05 16 32 H 0.40 3.62 7.28 -40.82 -0.30 3.32 16 33 H 0.08 1.39 8.14 -51.93 -0.42 0.97 16 34 H 0.07 1.00 8.14 -51.93 -0.42 0.57 16 35 H 0.06 0.63 7.47 -51.93 -0.39 0.25 16 36 H 0.06 0.73 7.10 -51.93 -0.37 0.36 16 37 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 38 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 39 H 0.07 1.34 7.28 -51.93 -0.38 0.96 16 40 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 41 H 0.25 6.92 8.31 -40.82 -0.34 6.58 16 42 H 0.12 3.15 5.45 -51.93 -0.28 2.87 16 43 H 0.01 0.14 7.71 -51.93 -0.40 -0.26 16 44 H 0.05 0.79 7.11 -51.93 -0.37 0.42 16 45 H 0.06 0.94 7.62 -51.93 -0.40 0.55 16 LS Contribution 361.24 15.07 5.44 5.44 Total: -1.00 -31.03 361.24 -7.33 -38.36 By element: Atomic # 1 Polarization: 8.23 SS G_CDS: -6.58 Total: 1.65 kcal Atomic # 6 Polarization: 2.89 SS G_CDS: -1.15 Total: 1.73 kcal Atomic # 7 Polarization: -48.35 SS G_CDS: -0.21 Total: -48.56 kcal Atomic # 8 Polarization: -9.07 SS G_CDS: 0.08 Total: -8.99 kcal Atomic # 9 Polarization: -6.49 SS G_CDS: 0.11 Total: -6.38 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -5.02 Total: 16.73 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -31.03 -7.33 -38.36 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001107507208.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -137.882 kcal (2) G-P(sol) polarization free energy of solvation -31.032 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -168.915 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.330 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.362 kcal (6) G-S(sol) free energy of system = (1) + (5) -176.244 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds